* partial merge from 'stable' into 'trunk'
* adds: [18606/branches/stable] (#830)
2 lines of code changed in 1 file:
* advice howto mark first occurrences (of found duplicates)
3 lines of code changed in 1 file:
* clear error exported from {{{gbt_nonexisting_alignment}}}
- made case-only rename fail in DEBUG mode.
6 lines of code changed in 1 file:
* copy source alignment name (fixes #829).
4 lines of code changed in 1 file:
* fix parameters of {{{GBT_rename_alignment}}} + {{{gbt_rename_alignment_of_item}}}
- rename.
- change to bool.
- callers use bool.
19 lines of code changed in 4 files:
* detect attempt to ''copy'' to alignment which differs from source only in case.
13 lines of code changed in 1 file: