December 2015 Commit Log

Number of Commits:
23
Number of Active Developers:
1
westram 2015-12-28 16:24 Rev.: 14656


* update demo.arb, such that there are
- nested unfolded groups
- all combinations of partially/completely marked/unmarked, folded/unfolded groups

4368 lines of code changed in 17 files:

westram 2015-12-23 17:13 Rev.: 14655


* spelling

6 lines of code changed in 3 files:

westram 2015-12-20 17:54 Rev.: 14644


- german todo-comments existed since file has been added to VC
* no idea about original authors intention -> removed (#314)

5 lines of code changed in 1 file:

westram 2015-12-19 20:08 Rev.: 14643


* check datapaths with GB_check_hkey (fixes #122)

9 lines of code changed in 1 file:

westram 2015-12-19 16:14 Rev.: 14641


* reintegrates 'remote' into 'trunk'
- implements #52 and #362
* adds: log:branches/remote@14624:14640

295 lines of code changed in 18 files:

westram 2015-12-18 12:44 Rev.: 14630


* compile-script:
- allow to configure
* cleanup (before update and build)
* revert (before update)
- use {{{$SHELL}}} instead of hardcoded tcsh

44 lines of code changed in 1 file:

westram 2015-12-17 18:20 Rev.: 14627


* sync gtk and motif versions

13 lines of code changed in 2 files:

westram 2015-12-17 18:11 Rev.: 14626


* sync gtk and motif versions

9 lines of code changed in 5 files:

westram 2015-12-16 16:13 Rev.: 14622


* reintegrates 'ui' into 'trunk'
- implements #656
- adds instant update for
* next neighbour search
* branch analysis (mark functions)
* arb-phylo (filter setup)
* adds: log:branches/ui@14588:14621

715 lines of code changed in 31 files:

westram 2015-12-15 19:27 Rev.: 14613


* 'Mark by reference'
- default filter expression did only work with field content created by 'Nearest relatives of LISTED' (not with entries generated by fast-aligner)
- added config-manager + added two predefined configs for the two use-cases
- updated help
- attach input- and display-fields to right window border (allows to see complete error-messages)
- fixed problems with empty and wrapped error messages

82 lines of code changed in 5 files:

westram 2015-12-11 16:05 Rev.: 14604


* reintegrates 'cleanup' into 'trunk'
- eliminates ~10k dead code
* adds: log:branches/cleanup@14598:14603

93 lines of code changed in 11 files:

westram 2015-12-06 15:00 Rev.: 14590


* add gcc 5.3.0

2 lines of code changed in 1 file:

westram 2015-12-06 14:22 Rev.: 14589


* 'Tree admin'
- updated documentation
- link correct help files to buttons
* add help button to 'Tree import'

94 lines of code changed in 6 files:

westram 2015-12-03 18:50 Rev.: 14587


* fix error-forwarding (from external tools -> ARB GUI)
- {{{GBK_singlequote}}} error message (replaces various wrong ways to do that)
- always call {{{arb_message}}} asynchronously

23 lines of code changed in 5 files:

westram 2015-12-03 18:48 Rev.: 14586


* fix truncated error-messages

6 lines of code changed in 1 file:

westram 2015-12-03 18:42 Rev.: 14585


* enclose failed command in backticks

1 lines of code changed in 1 file:

westram 2015-12-03 18:41 Rev.: 14584


* use GBK_system (instead of system)

4 lines of code changed in 3 files:

westram 2015-12-03 18:21 Rev.: 14583


- NDEBUG warning

3 lines of code changed in 1 file:

westram 2015-12-03 17:04 Rev.: 14582


* remove now-unneeded parameter 'filename' from ARB_zfclose

14 lines of code changed in 4 files:

westram 2015-12-03 16:57 Rev.: 14581


* do not reopen file/pipe to read ascii database format (avoids one broken-pipe error)
- use same detection method as already by {{{GBT_check_arb_file}}}
- arb now refuses to load ascii-databases without correct header
* added missing ascii-header to status.arb (default property file)
* {{{GBT_check_arb_file}}} now opens decompression pipe with stderr redirected
- hides the 'broken pipe' error always occurring from there (because only a few bytes get read)

72 lines of code changed in 5 files:

westram 2015-12-03 16:36 Rev.: 14580


* unused

0 lines of code changed in 1 file:

westram 2015-12-03 14:59 Rev.: 14579


* for each sucessfully opened file/pipe, store some information to provide better error messages

45 lines of code changed in 1 file:

westram 2015-12-01 18:02 Rev.: 14577


* reintegrates 'dbsave' into 'trunk'
- implements #666
* adds: log:branches/dbsave@14558:14576

536 lines of code changed in 4 files:

November 2015 »

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