July 2022 Commit Log

Number of Commits:

12

Number of Active Developers:

1

westram 2022-07-21 14:01 #12 Rev.: 19167

* reintegrates 'split' into 'trunk'
* adds: log:branches/split@19102:19166

1524 lines of code changed in 44 files:

• arb_CHANGES.txt (+1)
• ARBDB: adChangeKey.cxx (+9), ad_config.cxx (+1 -4), ad_t_prot.h (+5 -2), adali.cxx (+119 -34), adfile.cxx (+1 -3), adtcp.cxx (+8 -14), adtools.cxx (+5 -7), adtree.cxx (+1 -6), arbdb.h (+8 -1), arbdbpp.cxx (+21 -4)
• AWTI: AWTI_import.cxx (+3 -1)
• CORE: arb_strarray.cxx (+6 -13), arb_string.cxx (+16 -7), arb_string.h (+7), pos_range.cxx (+4), pos_range.h (+5 -2)
• EDIT4: ED4_ProteinViewer.cxx (+8 -3)
• GENOM: GEN_map.cxx (+4 -1)
• HELP_SOURCE/source: split.hlp (+24 -5)
• MERGE: MG_alignment.cxx (+1 -1), MG_species.cxx (+2 -2)
• MULTI_PROBE: MP_Window.cxx (+1 -1)
• NTREE: AP_consensus.cxx (+1 -1), Makefile (+4), NT_concatenate.cxx (+8 -4), NT_extern.cxx (+1 -2), NT_local_proto.h (-1), NT_split_ali.cxx (+263 -66)
• SL/ALILINK: AdminGui.cxx (+8 -14), TranslateRealign.cxx (+7 -6)
• SL/INSDEL: insdel.cxx (+28 -2), insdel.h (+1)
• SL/MACROS: recmac.cxx (+1 -1)
• SL/TREEDISP: TreeCallbacks.cxx (-4)
• SL/XFERSET: xferset.cxx (+2 -8)
• TEMPLATES: arb_unit_test.h (+1 -1)
• UNIT_TESTER: test_unit.h (+18 -1)
• UNIT_TESTER/run: TEST_split_expected.arb (+914 -47)
• UNIT_TESTER/run/general: pp_exp.amc (+2 -2)
• UNIT_TESTER/run/impexp: xml.eft.exported (+1 -1)
• WINDOW: AW_select.cxx (+4 -6), AW_status.cxx (-2)

westram 2022-07-09 10:17 #11 Rev.: 19143

* handle results from add-new-changekey functions.
- while refreshing keys: only warn.
* generally fix error handling in {{{MG_copy_and_check_alignments}}}.

41 lines of code changed in 4 files:

• AWT: AWT_input_mask.cxx (+3 -1)
• MERGE: MG_alignment.cxx (+23 -13), MG_species.cxx (+1 -1)
• SL/ITEMS: changekey.cxx (+14 -14)

westram 2022-07-09 10:15 #10 Rev.: 19142

* correct recursive call used to create hierarchical key-prefixes:
- did use wrong keypath for ALL BUT species.

1 lines of code changed in 1 file:

• ARBDB: adChangeKey.cxx (+1 -1)

westram 2022-07-09 10:14 #9 Rev.: 19141

* javadoc {{{GBT_add_new_changekey_to_keypath}}}.

7 lines of code changed in 1 file:

• ARBDB: adChangeKey.cxx (+7)

westram 2022-07-09 10:12 #8 Rev.: 19140

* in "add new changekey"-functions:
- change type of param 'type' (int -> GB_TYPES)
- fix callers where needed.

15 lines of code changed in 5 files:

• ARBDB: adChangeKey.cxx (+6 -6), ad_t_prot.h (+4 -4)
• MERGE: MG_species.cxx (+1 -1)
• SL/DB_UI: ui_species.cxx (+1 -1)
• SL/ITEMS: changekey.cxx (+3 -3)

westram 2022-07-09 10:10 #7 Rev.: 19139

* rename (typo).

6 lines of code changed in 1 file:

• AWT: AWT_input_mask.cxx (+6 -6)

westram 2022-07-09 10:08 #6 Rev.: 19138

* add {{{GB_warning_if}}}.

8 lines of code changed in 2 files:

• CORE: arb_msg.cxx (+7), arb_msg.h (+1)

westram 2022-07-07 16:43 #5 Rev.: 19128

* ARB_executable:
- accept executables specified with full path.
- document.
- change variable type.

13 lines of code changed in 1 file:

• CORE: arb_misc.cxx (+13 -1)

westram 2022-07-02 10:25 #4 Rev.: 19108

* dont use tabs.

4 lines of code changed in 1 file:

• util: arb_compile.sh (+4 -4)

westram 2022-07-01 14:36 #3 Rev.: 19106

* tweak debugability of userland buildlogs:
- show separators between single stages of build script.
- dump buildscript-config + config.makefile

44 lines of code changed in 1 file:

• util: arb_compile.sh (+44 -5)

westram 2022-07-01 14:26 #2 Rev.: 19105

* allow 1 or 3 vectorizations
* fixes linux RELEASE build

2 lines of code changed in 1 file:

• ARBDB: adoptimize.cxx (+2 -2)

westram 2022-07-01 14:16 #1 Rev.: 19104

* allow multiple alternative counts of vectorization
- notes:
* count depends on whether functions gets inlined or not.
* specifying explicit counts will check whether ALL instanciations (inlines) of the vectorized code get properly vectorized!

64 lines of code changed in 2 files:

• SOURCE_TOOLS: postcompile.pl (+56 -21), vectorize.README (+8 -3)

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