October 2018 Commit Log

Number of Commits:
16
Number of Active Developers:
1
westram 2018-10-31 09:52 Rev.: 17593


* reintegrates 'fix' into 'trunk'
- performs #798
* adds genetic code tables (24-31)
* adds combined amino acid J (I or L)
* improved translate and/or realign
- handle optional start-/stop-codons
- improve recognition of nuc-triples containing IUPAC-codes
* error messages now always list EMBL table numbers
* adds:
- log:branches/fix@17480:17485,17491:17492,17494:17507,17509:17528,17534:17592
- log:branches/optional@17481:17568

923 lines of code changed in 22 files:

westram 2018-10-26 18:19 Rev.: 17542


* allow compilation with gcc 6.5.0

1 lines of code changed in 1 file:

westram 2018-10-24 14:58 Rev.: 17534


* partial merge from 'fix' into 'trunk'
- globally define what are "gaps"
- kept behavioral changes to a minimum:
* defaults for (user-defined) gap-definition in EDIT4 changed
* EDIT sequence search also uses user-defined gaps
* adds: log:branches/fix@17529:17533

130 lines of code changed in 36 files:

westram 2018-10-23 09:36 Rev.: 17510


* partial merge from 'fix' into 'trunk'
* adds: [17508/branches/fix]

36 lines of code changed in 5 files:

westram 2018-10-23 09:33 Rev.: 17509


* partial merge from 'fix' into 'trunk'
* adds: [17493/branches/fix]

42 lines of code changed in 1 file:

westram 2018-10-19 15:18 Rev.: 17491


* partial merge from 'fix' into 'trunk'
- fix OSX build (was broken by [17387]):
* uses wrapper {{{ARB_strchrnul}}} instead of directly using {{{strchrnul}}}
* OSX version uses replacement code
* adds: log:branches/fix@17486:17490

45 lines of code changed in 4 files:

westram 2018-10-17 13:21 Rev.: 17481


- updated

2 lines of code changed in 1 file:

westram 2018-10-17 10:00 Rev.: 17478


* reintegrates 'svalues' into 'trunk'
- implements #614
* adds: log:branches/svalues@17357:17419,17428:17464,17469,17471:17477

2295 lines of code changed in 49 files:

westram 2018-10-12 16:44 Rev.: 17472


* partial merge from 'svalues' into 'trunk'
- increase group scaling for radial trees (+force {{{compute_tree}}} in tests)
- test different greylevels for groups (0%, 25%, 75%, 100%)
- fix greylevel shading of polygon/circles/arcs on printer/screen
* adds: log:branches/svalues@17465:17468,17470

1684 lines of code changed in 27 files:

westram 2018-10-09 09:48 Rev.: 17454


* eliminate useless code (omg!)

10 lines of code changed in 1 file:

westram 2018-10-09 09:17 Rev.: 17453


* calculate 'wertigkeit' only when used

17 lines of code changed in 1 file:

westram 2018-10-08 17:43 Rev.: 17452


* allow flag modification in update after colorizing multi-probe

10 lines of code changed in 1 file:

westram 2018-10-08 14:29 Rev.: 17451


* fix NDEBUG compilation with {{{PROVIDE_TREE_STRUCTURE_TESTS}}} defined

2 lines of code changed in 2 files:

westram 2018-10-04 14:17 Rev.: 17445


* use {{{SmartPtr::content()}}}

3 lines of code changed in 3 files:

westram 2018-10-02 15:08 Rev.: 17428


* partial merge from 'svalues' into 'trunk'
- root branches always need to have identical remarks (associated with the root-edge)
* condition previously implicit, now hardened by tests/assertions/...
* fixed several bugs that violated this condition
* adds: log:branches/svalues@17420:17427

236 lines of code changed in 18 files:

westram 2018-10-02 09:08 Rev.: 17424


* fix compilation w/o config.makefile (=auto-generation from template)
- was broken by [17375]

8 lines of code changed in 1 file:

September 2018 »

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