-
westram
2013-02-28 16:01
#34
Rev.: 9633
-
623 lines of code changed in 34 files:
-
Makefile (+3)
-
ARBDB:
Makefile (-23),
ad_prot.h (+1),
ad_t_prot.h (-4),
adali.cxx (+1 -4),
adcolumns.cxx (del),
arbdb.cxx (+1 -2)
-
CORE:
Makefile (+1),
pos_range.cxx (+58 -4),
pos_range.h (+41 -4)
-
HELP_SOURCE/oldhelp:
ad_align.hlp (+1 -1),
insdel.hlp (new 36),
insdel_sai.hlp (new 23)
-
NTREE:
Makefile (+6),
NT_extern.cxx (+11 -5),
NT_ins_col.cxx (+269 -50),
NT_main.cxx (+2 -1),
ad_ali.cxx (+2 -1),
needs_libs (+1)
-
SL:
Makefile (+4 -1)
-
SL/FAST_ALIGNER:
fast_aligner.cxx (+1 -1)
-
SL/FILTER:
RangeList.cxx (+34 -13),
RangeList.h (+10 -4)
-
SOURCE_TOOLS:
dep.4dummy (+2 -1),
dep.alltargets (+1),
dep.libtargets (+1),
generate_all_links.sh (+1),
valgrind2grep (+17 -2)
-
TEMPLATES:
arb_unit_test.h (+21 -2)
-
UNIT_TESTER:
Makefile.test (+1 -1),
test_unit.h (+6 -1)
-
lib/pictures:
inschar.fig (del),
insdel.fig (new 24),
insdel_sai.fig (new 43)
-
westram
2013-02-27 19:30
#33
Rev.: 9620
-
46 lines of code changed in 6 files:
-
AISC:
aisc_proto.h (+1 -1)
-
AISC_COM/C:
client.h (+7 -7)
-
ARBDB:
ad_prot.h (+1 -1),
ad_t_prot.h (+3 -3)
-
CONVERTALN:
prototypes.h (+30 -30)
-
PROBE:
pt_prototypes.h (+4 -4)
-
westram
2013-02-27 19:28
#32
Rev.: 9619
-
31 lines of code changed in 1 file:
-
AISC_MKPTPS:
mkptypes.cxx (+31 -13)
-
westram
2013-02-27 14:26
#31
Rev.: 9614
-
0 lines of code changed in 3 files:
-
SOURCE_TOOLS:
dep.4dummy (changed),
dep.alltargets (changed),
dep.libtargets (changed)
-
westram
2013-02-27 14:19
#30
Rev.: 9613
-
0 lines of code changed in 3 files:
-
SOURCE_TOOLS:
dep.4dummy (-62),
dep.alltargets (-74),
dep.libtargets (-62)
-
westram
2013-02-27 14:05
#29
Rev.: 9612
-
209 lines of code changed in 6 files:
-
SOURCE_TOOLS:
build_info.pl (+1 -1),
dep.4dummy (+62),
dep.alltargets (+74),
dep.libtargets (+62)
-
util:
arb_save (+7 -1),
arb_srclst.pl (+3 -1)
-
westram
2013-02-26 11:35
#28
Rev.: 9601
-
0 lines of code changed in 1 file:
-
PROBE:
PT_new_design.cxx (-6)
-
westram
2013-02-26 11:32
#27
Rev.: 9600
-
83 lines of code changed in 12 files:
-
AISC:
Makefile (+1 -1)
-
AISC_COM/AISC:
Makefile (+2 -2)
-
AISC_COM/C:
Makefile (+1 -2)
-
AISC_MKPTPS:
mkptypes.cxx (+44 -31)
-
ARBDB:
Makefile (+5 -5)
-
ARB_GDE:
Makefile (+1 -1)
-
CONVERTALN:
Makefile (+1 -1)
-
CORE:
Makefile (+1 -1)
-
NTREE:
Makefile (+2 -2)
-
PROBE:
Makefile (+1 -1)
-
SERVERCNTRL:
Makefile (+1 -1)
-
SL/TREEDISP:
TreeCallbacks.hxx (+23 -35)
-
westram
2013-02-13 15:00
#26
Rev.: 9581
-
36 lines of code changed in 3 files:
-
SL/FILTER:
Makefile (+5 -1)
-
SL/REFENTRIES:
Makefile (new)
-
westram
2013-02-13 14:59
#25
Rev.: 9580
-
19 lines of code changed in 2 files:
-
Makefile (+3 -3)
-
SL:
Makefile (+16 -42)
-
westram
2013-02-13 13:34
#24
Rev.: 9578
-
5 lines of code changed in 1 file:
-
westram
2013-02-13 12:49
#23
Rev.: 9577
-
16 lines of code changed in 1 file:
-
westram
2013-02-13 12:47
#22
Rev.: 9576
-
18 lines of code changed in 1 file:
-
AISC_COM/AISC:
Makefile (+18 -15)
-
westram
2013-02-13 12:24
#21
Rev.: 9575
-
86 lines of code changed in 86 files:
-
AISC:
Makefile (+1 -1)
-
AISC_MKPTPS:
Makefile (+1 -1)
-
ARBDB:
Makefile (+1 -1)
-
ARB_GDE:
Makefile (+1 -1)
-
AWT:
Makefile (+1 -1)
-
AWTC:
Makefile (+1 -1)
-
AWTI:
Makefile (+1 -1)
-
CONSENSUS_TREE:
Makefile (+1 -1)
-
CONVERTALN:
Makefile (+1 -1)
-
CORE:
Makefile (+1 -1)
-
DBSERVER:
Makefile (+1 -1)
-
DIST:
Makefile (+1 -1)
-
EDIT4:
Makefile (+1 -1)
-
EISPACK:
Makefile (+1 -1)
-
GDE:
Makefile (+1 -1)
-
GDE/AxML:
Makefile (+1 -1)
-
GDE/CLUSTAL:
Makefile (+1 -1)
-
GDE/CLUSTALW:
Makefile (+1 -1)
-
GDE/FASTDNAML:
Makefile (+1 -1)
-
GDE/PHYLIP:
Makefile (+1 -1)
-
GDE/PHYML:
Makefile (+1 -1)
-
GDE/RAxML:
Makefile (+1 -1)
-
GDE/SUPPORT:
Makefile (+1 -1)
-
GDE/TREEPUZZLE:
Makefile (+1 -1)
-
GENOM:
Makefile (+1 -1)
-
GENOM_IMPORT:
Makefile (+1 -1)
-
GL:
Makefile (+1 -1)
-
GL/glAW:
Makefile (+1 -1)
-
GL/glpng:
Makefile (+1 -1)
-
HELP_SOURCE:
Makefile (+1 -1)
-
ISLAND_HOPPING:
Makefile (+1 -1)
-
MERGE:
Makefile (+1 -1)
-
MULTI_PROBE:
Makefile (+1 -1)
-
NALIGNER:
Makefile (+1 -1)
-
NAMES:
Makefile (+1 -1)
-
NAMES_COM:
Makefile (+1 -1)
-
NTREE:
Makefile (+1 -1)
-
PARSIMONY:
Makefile (+1 -1)
-
PERLTOOLS:
Makefile (+1 -1)
-
PGT:
Makefile (+1 -1)
-
PHYLO:
Makefile (+1 -1)
-
PRIMER_DESIGN:
Makefile (+1 -1)
-
PROBE:
Makefile (+1 -1)
-
PROBE_COM:
Makefile (+1 -1)
-
PROBE_DESIGN:
Makefile (+1 -1)
-
PROBE_SET:
Makefile (+1 -1)
-
READSEQ:
Makefile (+1 -1)
-
RNA3D:
Makefile (+1 -1)
-
RNACMA:
Makefile (+1 -1)
-
SECEDIT:
Makefile (+1 -1)
-
SEQ_QUALITY:
Makefile (+1 -1)
-
SERVERCNTRL:
Makefile (+1 -1)
-
SL:
Makefile (+1 -1)
-
SL/ALIVIEW:
Makefile (+1 -1)
-
SL/AP_TREE:
Makefile (+1 -1)
-
SL/ARB_TREE:
Makefile (+1 -1)
-
SL/AW_HELIX:
Makefile (+1 -1)
-
SL/AW_NAME:
Makefile (+1 -1)
-
SL/DB_QUERY:
Makefile (+1 -1)
-
SL/DB_SCANNER:
Makefile (+1 -1)
-
SL/DB_UI:
Makefile (+1 -1)
-
SL/FAST_ALIGNER:
Makefile (+1 -1)
-
SL/GUI_ALIVIEW:
Makefile (+1 -1)
-
SL/HELIX:
Makefile (+1 -1)
-
SL/ITEMS:
Makefile (+1 -1)
-
SL/LOCATION:
Makefile (+1 -1)
-
SL/MATRIX:
Makefile (+1 -1)
-
SL/NDS:
Makefile (+1 -1)
-
SL/NEIGHBOURJOIN:
Makefile (+1 -1)
-
SL/PRONUC:
Makefile (+1 -1)
-
SL/PTCLEAN:
Makefile (+1 -1)
-
SL/REGEXPR:
Makefile (+1 -1)
-
SL/SEQIO:
Makefile (+1 -1)
-
SL/SEQUENCE:
Makefile (+1 -1)
-
SL/TRANSLATE:
Makefile (+1 -1)
-
SL/TREEDISP:
Makefile (+1 -1)
-
SL/TREE_ADMIN:
Makefile (+1 -1)
-
SL/TREE_READ:
Makefile (+1 -1)
-
SL/TREE_WRITE:
Makefile (+1 -1)
-
STAT:
Makefile (+1 -1)
-
TOOLS:
Makefile (+1 -1)
-
TREEGEN:
Makefile (+1 -1)
-
UNIT_TESTER:
Makefile (+1 -1)
-
WETC:
Makefile (+1 -1)
-
WINDOW:
Makefile (+1 -1)
-
XML:
Makefile (+1 -1)
-
westram
2013-02-13 12:23
#20
Rev.: 9574
-
12 lines of code changed in 7 files:
-
Makefile (+1 -1)
-
GDE:
Makefile (+1 -1)
-
GL:
Makefile (+1 -1)
-
PERL2ARB:
Makefile.main (+1 -1)
-
SL:
Makefile (+1 -1)
-
SOURCE_TOOLS:
fix_depends.pl (+6 -2)
-
XML_IMPORT:
Makefile (+1 -1)
-
westram
2013-02-13 08:32
#19
Rev.: 9573
-
9 lines of code changed in 2 files:
-
Makefile (+3 -10)
-
TEMPLATES:
cxxforward.h (+6 -2)
-
westram
2013-02-11 12:58
#18
Rev.: 9539
-
31 lines of code changed in 8 files:
-
EDIT4:
ED4_cursor.cxx (+2 -2),
ED4_manager.cxx (+4 -4),
ED4_protein_2nd_structure.cxx (+16 -15),
ED4_search.cxx (+2 -2),
ED4_window.cxx (+1 -1),
EDB_root_bact.cxx (+2 -2),
ed4_class.hxx (+4 -4),
ed4_defs.hxx (-4)
-
westram
2013-02-11 12:11
#17
Rev.: 9535
-
0 lines of code changed in 2 files:
-
PROBE_DESIGN:
SaiProbeVisualization.hxx (-2)
-
SL/FAST_ALIGNER:
ClustalV.cxx (-3)
-
westram
2013-02-11 11:53
#16
Rev.: 9534
-
14 lines of code changed in 5 files:
-
ARB_GDE:
GDE_FileIO.cxx (+5 -15),
GDE_Genbank.cxx (+3 -2),
GDE_HGLfile.cxx (+2 -2),
GDE_arbdb_io.cxx (+4 -2),
GDE_proto.h (-1)
-
westram
2013-02-11 11:35
#15
Rev.: 9533
-
333 lines of code changed in 35 files:
-
AISC:
aisc_commands.c (+6 -6)
-
AWTC:
awtc_next_neighbours.hxx (+1 -1)
-
CORE:
arb_progress.cxx (+36 -36),
arb_strarray.h (+2 -2)
-
DIST:
DI_clusters.cxx (+5 -5),
di_clustertree.hxx (+4 -4)
-
EDIT4:
ED4_block.cxx (+5 -5),
ED4_cursor.cxx (+11 -11),
ED4_plugins.cxx (+8 -8),
ed4_class.hxx (+80 -80)
-
GENOM:
EXP_main.cxx (+6 -6),
GEN_graphic.hxx (+5 -5),
GEN_map.cxx (+6 -6)
-
GENOM_IMPORT:
Importer.h (+4 -4)
-
NTREE:
NT_extern.cxx (+6 -6)
-
PARSIMONY:
ap_tree_nlen.hxx (+7 -7),
pars_dtree.hxx (+3 -3)
-
PERLTOOLS:
arb_proto_2_xsub.cxx (+3 -3)
-
PROBE_DESIGN:
SaiProbeVisualization.hxx (+4 -4)
-
SECEDIT:
SEC_graphic.hxx (+8 -8),
SEC_root.hxx (+19 -19)
-
SEQ_QUALITY:
SQ_GroupData.h (+13 -14)
-
SL/AP_TREE:
AP_Tree.cxx (+4 -2),
AP_Tree.hxx (+9 -10)
-
SL/ARB_TREE:
ARB_Tree.cxx (+1 -1),
ARB_Tree.hxx (+2 -2)
-
SL/FAST_ALIGNER:
fast_aligner.cxx (+4 -4)
-
SL/LOCATION:
Location.cxx (+15 -15)
-
SL/SEQUENCE:
AP_seq_dna.hxx (+6 -6),
AP_seq_protein.hxx (+6 -6),
AP_seq_simple_pro.hxx (+6 -6)
-
STAT:
MostLikelySeq.hxx (+6 -6)
-
TEMPLATES:
downcast.h (+1 -1)
-
UNIT_TESTER:
test_unit.h (+19 -19)
-
XML:
xml.hxx (+12 -12)
-
westram
2013-02-11 11:34
#14
Rev.: 9532
-
22 lines of code changed in 4 files:
-
AWT:
awt_canvas.hxx (+5 -5)
-
RNA3D:
RNA3D_Graphics.hxx (+3 -3)
-
SL/TREEDISP:
TreeDisplay.cxx (+6 -6),
TreeDisplay.hxx (+8 -8)
-
westram
2013-02-11 11:25
#13
Rev.: 9531
-
35 lines of code changed in 2 files:
-
AWT:
AWT_input_mask.cxx (+7 -7),
awt_input_mask_internal.hxx (+28 -30)
-
westram
2013-02-10 19:18
#12
Rev.: 9530
-
78 lines of code changed in 4 files:
-
PARSIMONY:
PARS_dtree.cxx (+40 -40),
PARS_main.cxx (+21 -24),
pars_dtree.hxx (+5 -3),
pars_main.hxx (+12 -5)
-
westram
2013-02-10 17:14
#11
Rev.: 9529
-
44 lines of code changed in 8 files:
-
DIST:
DI_clusters.cxx (+7 -8),
di_clustertree.hxx (+1 -1)
-
PARSIMONY:
AP_main.cxx (-6),
Makefile (+12),
PARS_dtree.cxx (+6 -13),
ap_main.hxx (+6 -1),
pars_main.hxx (+1 -1)
-
SL/ARB_TREE:
ARB_Tree.hxx (+11 -9)
-
westram
2013-02-10 16:06
#10
Rev.: 9528
-
91 lines of code changed in 1 file:
-
TEMPLATES:
downcast.h (+91 -4)
-
westram
2013-02-10 16:02
#9
Rev.: 9527
-
67 lines of code changed in 15 files:
-
DIST:
Makefile (+9)
-
EDIT4:
ED4_objspec.cxx (-1),
Makefile (+23)
-
MULTI_PROBE:
Makefile (+2)
-
NTREE:
Makefile (+4)
-
PARSIMONY:
Makefile (+6)
-
PROBE_DESIGN:
Makefile (+1)
-
SL/AP_TREE:
Makefile (+1)
-
SL/ARB_TREE:
Makefile (+1)
-
SL/SEQUENCE:
Makefile (+3)
-
SL/TREEDISP:
Makefile (+3)
-
STAT:
Makefile (+1)
-
TEMPLATES:
downcast.h (+3)
-
WINDOW:
AW_xfont.cxx (-1),
Makefile (+10)
-
westram
2013-02-10 14:17
#8
Rev.: 9526
-
1 lines of code changed in 1 file:
-
westram
2013-02-10 14:17
#7
Rev.: 9525
-
2 lines of code changed in 1 file:
-
TEMPLATES:
gccver.h (+2 -2)
-
westram
2013-02-09 16:29
#6
Rev.: 9524
-
7 lines of code changed in 2 files:
-
SEQ_QUALITY:
Makefile (-3),
SQ_GroupData.h (+7 -10)
-
westram
2013-02-09 15:39
#5
Rev.: 9523
-
50 lines of code changed in 3 files:
-
PROBE_SET:
ps_bitmap.hxx (+29 -25),
ps_bitset.hxx (+20 -18),
ps_database.hxx (+1 -1)
-
westram
2013-02-09 13:36
#4
Rev.: 9522
-
77 lines of code changed in 37 files:
-
AWT:
AWT_input_mask.cxx (+2 -2),
awt_canvas.hxx (+1 -1),
awt_input_mask_internal.hxx (+12 -12)
-
AWTC:
awtc_next_neighbours.hxx (+1 -1)
-
CORE:
arb_progress.cxx (+3 -3),
arb_strarray.h (+2 -2)
-
DIST:
di_clustertree.hxx (+2 -2)
-
EDIT4:
ED4_plugins.cxx (+1 -1),
ed4_class.hxx (+8 -8)
-
GENOM:
EXP_main.cxx (+1 -1),
GEN_graphic.hxx (+1 -1),
GEN_map.cxx (+1 -1)
-
GENOM_IMPORT:
Importer.h (+2 -2)
-
NTREE:
NT_extern.cxx (+1 -1)
-
PARSIMONY:
AP_buffer.hxx (+1 -1),
ap_tree_nlen.hxx (+1 -1)
-
PERLTOOLS:
arb_proto_2_xsub.cxx (+2 -2)
-
PROBE_DESIGN:
SaiProbeVisualization.hxx (+1 -1)
-
PROBE_SET:
ps_bitmap.hxx (+1 -1),
ps_database.hxx (+1 -1)
-
RNA3D:
RNA3D_Graphics.hxx (+1 -1)
-
SECEDIT:
SEC_graphic.hxx (+1 -1),
SEC_root.hxx (+5 -5)
-
SEQ_QUALITY:
Makefile (+2),
SQ_GroupData.h (+5 -1)
-
SL/AP_TREE:
AP_Tree.hxx (+2 -2)
-
SL/ARB_TREE:
ARB_Tree.hxx (+1 -1)
-
SL/SEQUENCE:
AP_seq_dna.hxx (+1 -1),
AP_seq_protein.hxx (+1 -1),
AP_seq_simple_pro.hxx (+1 -1)
-
SL/TREEDISP:
TreeDisplay.cxx (+1 -1),
TreeDisplay.hxx (+1 -1)
-
STAT:
MostLikelySeq.hxx (+1 -1)
-
UNIT_TESTER:
test_unit.h (+3 -3)
-
XML:
xml.hxx (+4 -4)
-
XML_IMPORT/IMP_TREE:
MySAXHandler.hxx (+1 -1),
sax2Handler.hxx (+1 -1)
-
westram
2013-02-09 12:52
#3
Rev.: 9521
-
414 lines of code changed in 69 files:
-
AISC:
Makefile (+6)
-
ARBDB:
Makefile (+33)
-
ARB_GDE:
Makefile (+8)
-
AWT:
Makefile (+15)
-
AWTC:
Makefile (+2)
-
AWTI:
Makefile (+2)
-
CONSENSUS_TREE:
Makefile (+6)
-
CONVERTALN:
Makefile (+2)
-
CORE:
Makefile (+13)
-
DBSERVER:
Makefile (+1)
-
DIST:
Makefile (+10)
-
EDIT4:
Makefile (+25)
-
GENOM:
Makefile (+8)
-
GENOM_IMPORT:
Makefile (+9)
-
GL/glAW:
Makefile (+1)
-
HELP_SOURCE:
Makefile (+1)
-
ISLAND_HOPPING:
Makefile (+1)
-
MERGE:
Makefile (+11)
-
MULTI_PROBE:
Makefile (+12)
-
NALIGNER:
Makefile (+10)
-
NAMES:
Makefile (+1)
-
NAMES_COM:
Makefile (+5)
-
NTREE:
Makefile (+25)
-
PARSIMONY:
Makefile (+9)
-
PERLTOOLS:
Makefile (+1)
-
PGT:
Makefile (+20)
-
PHYLO:
Makefile (+6)
-
PRIMER_DESIGN:
Makefile (+14)
-
PROBE:
Makefile (+3)
-
PROBE_COM:
Makefile (+5)
-
PROBE_DESIGN:
Makefile (+3)
-
PROBE_SET:
Makefile (+25)
-
RNA3D:
Makefile (+8)
-
RNACMA:
Makefile (+1)
-
SECEDIT:
Makefile (+14)
-
SEQ_QUALITY:
Makefile (+3)
-
SERVERCNTRL:
Makefile (+1)
-
SL/ALIVIEW:
Makefile (+2)
-
SL/AP_TREE:
Makefile (+1)
-
SL/ARB_TREE:
Makefile (+1)
-
SL/AW_HELIX:
Makefile (+1)
-
SL/AW_NAME:
Makefile (+2)
-
SL/DB_QUERY:
Makefile (+1)
-
SL/DB_SCANNER:
Makefile (+1)
-
SL/DB_UI:
Makefile (+1)
-
SL/FAST_ALIGNER:
Makefile (+3)
-
SL/GUI_ALIVIEW:
Makefile (+4)
-
SL/HELIX:
Makefile (+2)
-
SL/ITEMS:
Makefile (+3)
-
SL/LOCATION:
Makefile (+1)
-
SL/MATRIX:
Makefile (+1)
-
SL/NDS:
Makefile (+1)
-
SL/NEIGHBOURJOIN:
Makefile (+1)
-
SL/PRONUC:
Makefile (+4)
-
SL/PTCLEAN:
Makefile (+1)
-
SL/REGEXPR:
Makefile (+1)
-
SL/SEQIO:
Makefile (+2)
-
SL/SEQUENCE:
Makefile (+4)
-
SL/TRANSLATE:
Makefile (+1)
-
SL/TREEDISP:
Makefile (+3)
-
SL/TREE_ADMIN:
Makefile (+1)
-
SL/TREE_READ:
Makefile (+2)
-
SL/TREE_WRITE:
Makefile (+1)
-
STAT:
Makefile (+3)
-
TOOLS:
Makefile (+15)
-
UNIT_TESTER:
Makefile (+2)
-
WETC:
Makefile (+1)
-
WINDOW:
Makefile (+26)
-
XML:
Makefile (+1)
-
westram
2013-02-09 12:50
#2
Rev.: 9520
-
22 lines of code changed in 6 files:
-
CONVERTALN:
embl.h (-3),
genbank.h (-3),
input_format.h (-3)
-
RNACMA:
Cma.h (+18 -2)
-
TEMPLATES:
arbtools.h (+3),
static_assert.h (+1 -1)
-
westram
2013-02-09 11:16
#1
Rev.: 9516
-
905 lines of code changed in 113 files:
-
Makefile (+18 -3)
-
AISC:
Makefile (+6)
-
AISC_COM/C:
server.c (+1 -1)
-
AISC_MKPTPS:
Makefile (+4),
mkptypes.cxx (+19 -67)
-
ARBDB:
Makefile (+45),
ad_io_inline.h (+2 -2),
adcompr.cxx (+2 -2),
adlang1.cxx (+1 -1),
admap.cxx (+2 -2),
adseqcompr.cxx (+1 -1)
-
ARB_GDE:
Makefile (+8)
-
AWT:
AWT_www.cxx (+1 -1),
Makefile (+15)
-
AWTC:
Makefile (+2)
-
AWTI:
Makefile (+2)
-
CONSENSUS_TREE:
Makefile (+6)
-
CONVERTALN:
Makefile (+32),
convert.cxx (+3),
embl.h (+11 -8),
fconv.cxx (+1 -1),
gcg.cxx (+37 -33),
genbank.h (+11 -9),
input_format.h (+6 -3),
macke.cxx (+1 -1),
macke.h (+10 -10),
paup.cxx (+1),
phylip.cxx (+1),
printable.cxx (+1),
reader.cxx (+18 -6),
reader.h (+21 -9)
-
CORE:
Makefile (+13),
arb_signal.cxx (+51)
-
DBSERVER:
Makefile (+1)
-
DIST:
DI_clustertree.cxx (+1 -1),
Makefile (+10)
-
EDIT4:
ED4_objspec.cxx (+1 -1),
Makefile (+27)
-
GENOM:
Makefile (+8)
-
GENOM_IMPORT:
Makefile (+3)
-
GL/glAW:
Makefile (+1)
-
HELP_SOURCE:
Makefile (+1)
-
ISLAND_HOPPING:
Makefile (+2)
-
MERGE:
Makefile (+11)
-
MULTI_PROBE:
Makefile (+12)
-
NALIGNER:
Makefile (+10)
-
NAMES:
Makefile (+1)
-
NAMES_COM:
Makefile (+7)
-
NTREE:
Makefile (+25)
-
PARSIMONY:
Makefile (+7)
-
PERLTOOLS:
Makefile (+1),
arb_proto_2_xsub.cxx (+2 -2)
-
PGT:
Makefile (+10)
-
PHYLO:
Makefile (+6)
-
PRIMER_DESIGN:
Makefile (+2)
-
PROBE:
Makefile (+19),
PT_prefixtree.cxx (+2 -2),
probe_tree.h (+3 -3)
-
PROBE_COM:
Makefile (+7)
-
PROBE_DESIGN:
Makefile (+3)
-
PROBE_SET:
Makefile (+3)
-
RNA3D:
Makefile (+8)
-
RNACMA:
Cma.h (+4 -5),
Makefile (+28 -3),
dbconn.cxx (+1 -1)
-
SECEDIT:
Makefile (+12),
SEC_main.cxx (+2 -2)
-
SEQ_QUALITY:
Makefile (+3)
-
SERVERCNTRL:
Makefile (+1)
-
SL/AP_TREE:
Makefile (+1)
-
SL/ARB_TREE:
Makefile (+1)
-
SL/AW_HELIX:
Makefile (+1)
-
SL/AW_NAME:
Makefile (+2)
-
SL/DB_QUERY:
Makefile (+1)
-
SL/DB_SCANNER:
Makefile (+1)
-
SL/DB_UI:
Makefile (+1)
-
SL/FAST_ALIGNER:
Makefile (+3)
-
SL/GUI_ALIVIEW:
Makefile (+2)
-
SL/HELIX:
Makefile (+2)
-
SL/ITEMS:
Makefile (+3)
-
SL/LOCATION:
Makefile (+1)
-
SL/MATRIX:
Makefile (+1)
-
SL/NDS:
Makefile (+1)
-
SL/NEIGHBOURJOIN:
Makefile (+1)
-
SL/PRONUC:
Makefile (+2)
-
SL/PTCLEAN:
Makefile (+1)
-
SL/REGEXPR:
Makefile (+1)
-
SL/SEQIO:
Makefile (+2)
-
SL/SEQUENCE:
Makefile (+4)
-
SL/TRANSLATE:
Makefile (+1)
-
SL/TREEDISP:
Makefile (+3)
-
SL/TREE_ADMIN:
Makefile (+1)
-
SL/TREE_READ:
Makefile (+2)
-
SL/TREE_WRITE:
Makefile (+1)
-
SOURCE_TOOLS:
generate_all_links.sh (+3)
-
STAT:
Makefile (+3)
-
TEMPLATES:
arb_early_check.h (new 35),
attributes.h (+5 -32),
cxxforward.h (new 46),
gccver.h (new 39),
static_assert.h (+18 -2)
-
TOOLS:
Makefile (+15)
-
TREEGEN:
Makefile (+8)
-
UNIT_TESTER:
Makefile (+2),
Makefile.test (+3 -2),
TestEnvironment.cxx (+6),
UnitTester.cxx (+38 -5),
UnitTester.hxx (+2),
make_symlist.sh (new 12)
-
WETC:
Makefile (+1)
-
WINDOW:
AW_xfont.cxx (+2 -2),
Makefile (+28)
-
XML:
Makefile (+1)