September 2004 Commit Log

Number of Commits:
84
Number of Active Developers:
5
yadhu 2004-09-23 16:50 Rev.: 3203

Changes Made :
1.Display is refreshed when ACI command is selected or defined.
2.Problem with different Cobination of Fonts and sizes is fixed.

16 lines of code changed in 2 files:

westram 2004-09-23 15:33 Rev.: 3202

- removed seq-color mapping (now hardcoded in EDIT4)

0 lines of code changed in 1 file:

westram 2004-09-23 15:33 Rev.: 3201

- re-formatted, spelling

36 lines of code changed in 1 file:

westram 2004-09-23 15:32 Rev.: 3200

- changed default colors

6 lines of code changed in 1 file:

westram 2004-09-23 15:32 Rev.: 3199

*** empty log message ***

4 lines of code changed in 1 file:

westram 2004-09-23 15:32 Rev.: 3198

- hardcoded seq-color mapping (was partly hardcoded/partly on defaults - KISS)
- added create_seq_color_awars()

63 lines of code changed in 1 file:

westram 2004-09-22 18:26 Rev.: 3197

- beautified

35 lines of code changed in 1 file:

westram 2004-09-22 18:26 Rev.: 3196

- AW_window is no longer a friend of AW_device
- defined pure abstract cctor and operator=
- beautified
- added explicit virtual destructor to AW_device.
(I thought splicing occurred, but it was only a wrong prototype)
- same for AW_clip, AW_gc and AW_matrix

34 lines of code changed in 1 file:

westram 2004-09-22 18:24 Rev.: 3195

- made 'out' private + added get_FILE()
- fixed wrong prototype of AW_device_print

17 lines of code changed in 1 file:

westram 2004-09-22 18:23 Rev.: 3194

- uses get_FILE() to access FILE* of AW_device_print
- fixed AW_device_print::circle prototype

5 lines of code changed in 1 file:

westram 2004-09-22 18:22 Rev.: 3193

* NTREE/NT_extern.cxx: - added bootstrap-circle max.size and ellipse settings to 'Tree Settings'
- added refresh callback to AWAR_DTREE_CIRCLE_MAX_SIZE and AWAR_DTREE_USE_ELLIPSE
- made tree-settings saveable to config

43 lines of code changed in 1 file:

westram 2004-09-22 18:21 Rev.: 3192

- removed subtopics

1 lines of code changed in 1 file:

westram 2004-09-22 18:21 Rev.: 3191

- spelling

3 lines of code changed in 1 file:

westram 2004-09-22 18:21 Rev.: 3190

- updated

22 lines of code changed in 1 file:

westram 2004-09-22 18:20 Rev.: 3189

- added new GCs for bootstraps

2 lines of code changed in 1 file:

westram 2004-09-22 18:20 Rev.: 3188

- added AWAR_DTREE_CIRCLE_MAX_SIZE and AWAR_DTREE_USE_ELLIPSE
- added circle_max_size + use_ellipse to AWT_graphic_tree

18 lines of code changed in 1 file:

westram 2004-09-22 18:20 Rev.: 3187

- defines and reads AWAR_DTREE_CIRCLE_MAX_SIZE and AWAR_DTREE_USE_ELLIPSE
- AWT_show_bootstrap_circle has new parameter (max. allowed radius)
- changed minimum for AWAR_DTREE_BASELINEWIDTH to 1
- renamed AWT_show_circle -> AWT_show_bootstrap_circle
- commented bootstrap circle-size calculation
- draw limited bootstraps in different color
- added separate color defs for bootstrap circles
- changed limits for some tree awars

63 lines of code changed in 1 file:

westram 2004-09-22 18:17 Rev.: 3186

- added 'config' label

20 lines of code changed in 1 file:

westram 2004-09-22 18:16 Rev.: 3185

- added warning

4 lines of code changed in 1 file:

westram 2004-09-22 18:16 Rev.: 3184

- warning fix

5 lines of code changed in 3 files:

westram 2004-09-22 18:16 Rev.: 3183

formatting

6 lines of code changed in 1 file:

westram 2004-09-22 18:12 Rev.: 3182

- warning removed

1 lines of code changed in 1 file:

westram 2004-09-22 18:11 Rev.: 3181

- cleanup

0 lines of code changed in 1 file:

yadhu 2004-09-20 15:43 Rev.: 3180

Converts and Displays the Probe Target in UPPER CASE in SAI PROBE window.

10 lines of code changed in 2 files:

yadhu 2004-09-20 12:53 Rev.: 3179

Function to fetch database fields to display is added to Header file for accessibility.

2 lines of code changed in 2 files:

yadhu 2004-09-20 12:31 Rev.: 3178

Changes to SAI PROBE visualization Feature :
1.Now, User can change the Species Information displayed along with the probes.
2.Selected Probe species is highlighted in different background and the bg color can be customisable.
3. Minor changes to Layout and display colors.

115 lines of code changed in 3 files:

yadhu 2004-09-20 12:26 Rev.: 3177

*** empty log message ***

1 lines of code changed in 1 file:

yadhu 2004-09-20 12:23 Rev.: 3176

Xfig file to change Species Information displayed in SAI Probe Visualization Window.

204 lines of code changed in 1 file:

westram 2004-09-17 13:44 Rev.: 3175

removed outdated versions

0 lines of code changed in 3 files:

westram 2004-09-17 13:43 Rev.: 3174

old versions

225 lines of code changed in 2 files:

westram 2004-09-17 13:41 Rev.: 3173

- like fasta.ift, but keeps alignment

23 lines of code changed in 1 file:

westram 2004-09-17 13:41 Rev.: 3172

- new ift's from WL

1278 lines of code changed in 4 files:

richter 2004-09-16 13:44 Rev.: 3171

recognize force option in the form -force=1; for experts only

1 lines of code changed in 1 file:

westram 2004-09-15 11:44 Rev.: 3170

depends updated

15 lines of code changed in 1 file:

westram 2004-09-15 11:44 Rev.: 3169

updated

9 lines of code changed in 1 file:

westram 2004-09-15 11:39 Rev.: 3168

- generation warning in generated aisc files
- if parameter names are missing in prototypes, it inserts
'unnamed1', 'unnamed2', .. into generated aisc files

15 lines of code changed in 1 file:

westram 2004-09-15 11:38 Rev.: 3167

- header of generated files more verbose (tells from which file(s) it was generated)

30 lines of code changed in 5 files:

westram 2004-09-15 11:36 Rev.: 3166

- add printf_error()
- aisc error-messages are in gcc-format now
- injects code to restore file/linenumber info
- do_com_write removes injected @SETSOURCE...@

65 lines of code changed in 1 file:

westram 2004-09-15 11:36 Rev.: 3165

- aisc error-messages are in gcc-format now
- read_aisc_string() interprets @SETSOURCE..@

56 lines of code changed in 1 file:

westram 2004-09-15 11:31 Rev.: 3164

- clean removes *_COM/GENH/*.aisc

2 lines of code changed in 1 file:

westram 2004-09-13 17:12 Rev.: 3163

- automatically changes tree sort to AP_LIST_NDS if there is no tree
(now uses set_tree_type() to do this permanently)

5 lines of code changed in 1 file:

westram 2004-09-13 17:12 Rev.: 3162

- normal (non-genome) import didn't work
- removed several begin/end transactions

13 lines of code changed in 1 file:

westram 2004-09-13 15:48 Rev.: 3161

- calls names_server_save when client disconnects
- cleanup

8 lines of code changed in 1 file:

westram 2004-09-13 15:47 Rev.: 3160

- formatted

28 lines of code changed in 1 file:

westram 2004-09-13 15:47 Rev.: 3159

- changed name server timeout to 4 minutes

7 lines of code changed in 1 file:

westram 2004-09-13 15:47 Rev.: 3158

- added messages
- added names_server_save (called from NAMES_COM/names_extern.c to save names.dat)

7 lines of code changed in 1 file:

westram 2004-09-13 15:47 Rev.: 3157

- inconsistency warning

8 lines of code changed in 1 file:

westram 2004-09-13 15:46 Rev.: 3156

- added NameServerConnection::disconnect()
- AWTC_pars_names()
. localized variables
. calls name_server.disconnect

80 lines of code changed in 1 file:

westram 2004-09-13 15:46 Rev.: 3155

- added a debug switch to terminate server instantly when connection is closed

13 lines of code changed in 1 file:

westram 2004-09-13 15:46 Rev.: 3154

- grep for 'arb_' (instead of 'arb' only)

1 lines of code changed in 1 file:

westram 2004-09-13 11:20 Rev.: 3153

- removed DEBUG printf

1 lines of code changed in 1 file:

westram 2004-09-13 11:20 Rev.: 3152

- renamed tree-style names (they were too confusing)
- AD_map_viewer does select species (select mode was broken in arb_pars)

18 lines of code changed in 1 file:

westram 2004-09-13 11:19 Rev.: 3151

- minor change

3 lines of code changed in 1 file:

westram 2004-09-13 11:18 Rev.: 3150

- cosmetics

3 lines of code changed in 1 file:

westram 2004-09-13 11:17 Rev.: 3149

- DB optimization runs with pushed security
- renamed tree-style names (they were too confusing)

10 lines of code changed in 1 file:

westram 2004-09-13 11:16 Rev.: 3148

- renamed tree-style names (they were too confusing)
- added 'irs_tree_ruler_scale_factor' to AWT_graphic_tree, because IRS tree uses different scaling
- added sort_is_list_style / sort_is_tree_style inliners

10 lines of code changed in 1 file:

westram 2004-09-13 11:15 Rev.: 3147

- renamed tree-style names (they were too confusing)
- adjusted text displayed in modes AWT_MODE_LENGTH and AWT_MODE_MOVE

7 lines of code changed in 1 file:

westram 2004-09-13 11:14 Rev.: 3146

- fix some errors occurred with group info movement (move from/to species)
- exchanges group infos if one is dragged onto another
- move_group_info touches group_name db-entry to force taxonomy reload

42 lines of code changed in 1 file:

westram 2004-09-13 11:13 Rev.: 3145

- provides some information to be able to paint the ruler

17 lines of code changed in 1 file:

westram 2004-09-13 11:11 Rev.: 3144

- renamed tree-style names (they were too confusing)
- show_ruler checks tree display style
- ruler shown in 'folding tree display' (IRS)
- several fixed scaling fixes (comp_rot_spread, ruler, rot_show_triangle)
- ruler text offset is stored seperately for each tree display mode
- allow use of right mouse button for scaling -> scale to 1 digit after comma

210 lines of code changed in 1 file:

westram 2004-09-13 11:06 Rev.: 3143

shows information about callbacks
fix crash with special types (GB_BYTES etc.)

12 lines of code changed in 1 file:

westram 2004-09-13 11:05 Rev.: 3142

prototypes updated

2 lines of code changed in 2 files:

westram 2004-09-13 11:04 Rev.: 3141

- added GB_get_callback_info() (DB browser shows callbacks now)
- added warning into GB_read_as_string

30 lines of code changed in 1 file:

westram 2004-09-13 11:03 Rev.: 3140

- cosmetic changes in debug code

27 lines of code changed in 1 file:

westram 2004-09-13 11:01 Rev.: 3139

* ARBDB/adlang1.c: - when taxonomy cache is deleted, a tree refresh is forced
- flush_taxonomy_cb now no longer bound to tree_data/tree_xxx, but to several child
in that container

39 lines of code changed in 1 file:

westram 2004-09-13 11:00 Rev.: 3138

* ARBDB/adTest.c: - DB optimization runs with pushed security
- GB_dump prints key (try it in debugger with 'p GB_dump(gbd)')

12 lines of code changed in 1 file:

westram 2004-09-13 10:59 Rev.: 3137

- RALFX defines DEVEL_ARTEM
- added HARALDX (including DEVEL_ARTEM)

8 lines of code changed in 1 file:

westram 2004-09-11 13:09 Rev.: 3136

minor changes

30 lines of code changed in 3 files:

westram 2004-09-11 13:03 Rev.: 3135

- conditional wrapper: Artems ARB version uses Genom_read_embl_universal(), other
ARB versions use previous routines
- removed duplicated code (duplicating code is always a nono)
- continues importing even if errors occur; prints summary; raises error if _none_ of the given files could be imported
- added error given by read-functions into error message
- removed TABS and fixed indentation

57 lines of code changed in 1 file:

artemov 2004-09-11 11:54 Rev.: 3134

depends updated

1 lines of code changed in 1 file:

artemov 2004-09-11 11:53 Rev.: 3133

create link to GenomImport.h (ralf)

1 lines of code changed in 1 file:

artemov 2004-09-11 11:50 Rev.: 3132

checked in Artems changes (ralf)

526 lines of code changed in 16 files:

artemov 2004-09-10 13:58 Rev.: 3131

diff update (ralf)

5 lines of code changed in 1 file:

artemov 2004-09-10 13:56 Rev.: 3130

fixes for GenomImport (needs to be linked to old import for non-Artems)

4 lines of code changed in 2 files:

artemov 2004-09-10 13:56 Rev.: 3129

Link GenomImport lib to ARB (needs to be disabled for non-ARTEMS)

1 lines of code changed in 1 file:

artemov 2004-09-10 13:51 Rev.: 3128

fix (ralf)

44 lines of code changed in 2 files:

artemov 2004-09-10 13:13 Rev.: 3127

removed (ralf)

0 lines of code changed in 1 file:

artemov 2004-09-10 13:12 Rev.: 3126

Interface to ARB

35 lines of code changed in 2 files:

westram 2004-09-09 17:07 Rev.: 3125

*** empty log message ***

1 lines of code changed in 1 file:

westram 2004-09-09 17:06 Rev.: 3124

- genome import code put into library

459 lines of code changed in 19 files:

westram 2004-09-09 17:05 Rev.: 3123

- added test environment for Artem

5 lines of code changed in 1 file:

meierh 2004-09-09 13:49 Rev.: 3122

bugfix (crashed when previously selected pt-sever did not exist in current arb_tcp.dat)

5 lines of code changed in 1 file:

meierh 2004-09-02 17:56 Rev.: 3121

Separate Database Transaction for Each "Genome Species" imported; Documentation

194 lines of code changed in 2 files:

meierh 2004-09-01 17:37 Rev.: 3120

aw-messages modified

4 lines of code changed in 1 file:

August 2004 »

Generated by StatSVN 0.7.0