merge from dev [7688] [7689] [7690] [7691]
* clear error exported by gbt_scan_db_rek
* same as [7628] for NT_save_quick_as_cb
* fix progress indicator of db optimization (assertion failures)
25 lines of code changed in 6 files:
merge from dev [7679] [7683] [7684] [7685] [7686]
* ARBDB -> CORE
- functions handling string arrays
- adsort
* unit test for GBT_scan_db
* reorder item keys
- fixed crash/stupid warning message when moving beyond end of list
- added sorting (name, type, freq)
* removed obsolete default field (relict from old version showing groups in species information window)
901 lines of code changed in 57 files:
merge from dev [7680] [7681] [7682] [7696] [7698]
* misc build issues
- more fixes to "make clean"
- fix make-jobserver warnings (unwanted fallbacks to -j1)
- print max. test duration of single lib-tests
- create whitespace patch
64 lines of code changed in 8 files:
merge from dev [7671] [7672]
* AW_device
- device invisible
* made invisible_impl pure virtual (like other impls)
* added generic_invisible and use in AW_device_Xm::invisible_impl
* removed unused parameter 'gc'
- removed flavor of invisible() not using position - prototype clashed and outdated anyway
- privat_reset
* made pure virtual in AW_device
* renamed to specific_reset
* swapped order for diff in display test
41 lines of code changed in 8 files:
- merge from stable_5.0 [7758]
14 lines of code changed in 5 files:
- remove prefix added by [7743] (svnversion bug?)
4 lines of code changed in 1 file:
- use revision of last commit to branch instead of global head revision
1 lines of code changed in 1 file:
- fix: print exitcode of failed system calls
5 lines of code changed in 3 files:
* again added possibility to mark by acc etc. (was accidently dropped in [5767])
* added switch '-ambiguous' (allow multiple matches)
* added switch '-partial' (allow partial matches)
73 lines of code changed in 1 file:
- depends
3 lines of code changed in 1 file:
- removed function duplicate
1 lines of code changed in 2 files:
- added unit test for GEN_position and GBT_read_gene_sequence_and_length
138 lines of code changed in 1 file: