April 2007 Commit Log

Number of Commits:

45

Number of Active Developers:

2

westram 2007-04-27 10:54 #45 Rev.: 4502

- make hotfix work

4 lines of code changed in 1 file:

• ARBDB: adtcp.c (+4 -2)

westram 2007-04-27 10:50 #44 Rev.: 4501

- show build date of pt servers
- fixed const-modifying code (fixes ticket #12 comment 04/23/07 14:42:34)

40 lines of code changed in 1 file:

• ARBDB: adtcp.c (+40 -16)

westram 2007-04-27 10:38 #43 Rev.: 4500

- better message when pt-server wasn't built yet
- changed param of arb_look_and_kill_server

9 lines of code changed in 1 file:

• SERVERCNTRL: servercntrl.c (+9 -7)

westram 2007-04-27 10:38 #42 Rev.: 4499

- changed param of arb_look_and_kill_server

5 lines of code changed in 1 file:

• SERVERCNTRL: servercntrl.h (+5 -4)

baderk 2007-04-25 18:51 #41 Rev.: 4498

Fixed an error (seqfault) which appeared when trying to calc the helix quality of sequences and using long fiters.

29 lines of code changed in 2 files:

• SEQ_QUALITY: SQ_functions.cxx (+2 -2), SQ_helix.h (+27 -18)

westram 2007-04-20 14:28 #40 Rev.: 4497

- arb_start_server modified const result of GBS_read_arb_tcp()
- arb_look_and_kill_server: fixed missing const warning (which has been casted away)

87 lines of code changed in 1 file:

• SERVERCNTRL: servercntrl.c (+87 -65)

westram 2007-04-20 14:27 #39 Rev.: 4496

- main: fixed missing const warning (which has been casted away)

8 lines of code changed in 2 files:

• NAMES: names.cxx (+6 -4)
• PROBE: PT_main.cxx (+2 -2)

westram 2007-04-20 14:27 #38 Rev.: 4495

- made some params const

6 lines of code changed in 2 files:

• AISC_COM/C: server.c (+3 -3), server.h (+3 -3)

westram 2007-04-19 14:34 #37 Rev.: 4494

- fixed undefined behavior in aw_str_2_label()

35 lines of code changed in 1 file:

• WINDOW: AW_window.cxx (+35 -29)

westram 2007-04-19 14:34 #36 Rev.: 4493

- fixed handling of changed return value (was freeing const value due to past
cast from char* to char*)
If I get hold of anybody inserting such casts, I'll cast him out of
the window personally!

7 lines of code changed in 1 file:

• ARBDB: adsocket.c (+7 -9)

baderk 2007-04-19 14:04 #35 Rev.: 4492

Added "(K)Ubuntu" to the DEBIAN flag comment

1 lines of code changed in 1 file:

• config.makefile.template (+1 -1)

baderk 2007-04-19 13:22 #34 Rev.: 4491

Menu "Sequence Quality Tool" activated (DEBUG comments removed)

0 lines of code changed in 1 file:

• NTREE: NT_extern.cxx (-5)

westram 2007-04-19 09:44 #33 Rev.: 4490

- added comments before putting into ARB

3 lines of code changed in 1 file:

• SOURCE_TOOLS: grepx.pl (+3 -3)

westram 2007-04-19 09:44 #32 Rev.: 4489

- merged with version from ARB

57 lines of code changed in 1 file:

• SOURCE_TOOLS: find_newest_source.pl (+57 -8)

westram 2007-04-18 23:22 #31 Rev.: 4488

- developer switch (added kai)

2 lines of code changed in 1 file:

• NTREE: NT_extern.cxx (+2 -2)

westram 2007-04-18 23:19 #30 Rev.: 4487

- added a checksum test on GDE reimport (used by external aligners).
If checksum is changed by aligner -> print warning message

30 lines of code changed in 1 file:

• ARB_GDE: GDE_event.cxx (+30 -12)

westram 2007-04-18 23:10 #29 Rev.: 4486

- changed calls to open_AWTC_import_window()
- CLI parameter '-import'

26 lines of code changed in 1 file:

• NTREE: NT_main.cxx (+26 -10)

westram 2007-04-18 23:10 #28 Rev.: 4485

- reverted back to old genome importer due to partial CVS merge

3 lines of code changed in 1 file:

• AWTI: AWTI_import.cxx (+3 -2)

westram 2007-04-18 23:08 #27 Rev.: 4484

- depends updated

22 lines of code changed in 2 files:

• ARBDB2: Makefile (+11)
• ARBDBS: Makefile (+11)

westram 2007-04-18 23:05 #26 Rev.: 4483

- changed 'char*' to 'const char*' due to changed result
of GBS_read_arb_tcp

1 lines of code changed in 1 file:

• PROBE_SERVER/PROBE_GROUP: pg_search.cxx (+1 -1)

westram 2007-04-18 23:01 #25 Rev.: 4482

- added ARB_TCP_DAT_VERSION
- improved description

13 lines of code changed in 1 file:

• lib: arb_tcp_org.dat (+13 -3)

westram 2007-04-18 23:00 #24 Rev.: 4481

- fixed undefined behavior in AW_xfig::print

25 lines of code changed in 1 file:

• WINDOW: AW_xfig.cxx (+25 -17)

westram 2007-04-18 22:58 #23 Rev.: 4480

- aw_message can handle messages containing LFs

32 lines of code changed in 1 file:

• WINDOW: AW_status.cxx (+32 -7)

westram 2007-04-18 22:56 #22 Rev.: 4479

- changed 'char*' to 'const char*' due to changed result
of GBS_read_arb_tcp

4 lines of code changed in 3 files:

• NALIGNER: ali_pt.cxx (+2 -5)
• PROBE_SERVER/PROBE_GROUP_DESIGN: pgd_main.cxx (+1 -1)
• TOOLS: arb_probe.cxx (+1 -1)

westram 2007-04-18 22:54 #21 Rev.: 4478

- fixed a bug in nameserver (crash on load of old DB version)

1 lines of code changed in 1 file:

• NAMES: names.cxx (+1 -1)

westram 2007-04-18 22:52 #20 Rev.: 4477

- changed several 'char*' to 'const char*' due to changed result
of GBS_read_arb_tcp and GBS_scan_arb_tcp_param

15 lines of code changed in 2 files:

• PROBE_DESIGN: probe_design.cxx (+11 -13)
• SERVERCNTRL: servercntrl.c (+4 -8)

westram 2007-04-18 22:43 #19 Rev.: 4476

- fixed call to open_AWTC_import_window()

1 lines of code changed in 1 file:

• NTREE: NT_import.cxx (+1 -1)

westram 2007-04-18 22:36 #18 Rev.: 4475

- fixed result-type of MP_probe_pt_look_for_server()

36 lines of code changed in 3 files:

• MULTI_PROBE: MP_externs.hxx (+25 -29), MP_mo_liste.cxx (+10 -9), MP_noclass.cxx (+1 -1)

westram 2007-04-18 22:31 #17 Rev.: 4474

- added wrapper to use header w/o gui-parts
- added AW_select_nameserver()

6 lines of code changed in 1 file:

• SL/AW_NAME: AW_rename.hxx (+6)

westram 2007-04-18 22:31 #16 Rev.: 4473

- added AW_select_nameserver()
- fixed changed result-type of GBS_read_arb_tcp()

100 lines of code changed in 1 file:

• SL/AW_NAME: AW_rename.cxx (+100 -5)

westram 2007-04-18 19:13 #15 Rev.: 4472

- pass main DB to open_AWTC_import_window

1 lines of code changed in 1 file:

• AWTI: awti_import.hxx (+1 -1)

westram 2007-04-18 19:13 #14 Rev.: 4471

- added 'doExit' and 'gb_other_main' to struct awtcig

9 lines of code changed in 1 file:

• AWTI: awti_imp_local.hxx (+9 -7)

westram 2007-04-18 19:13 #13 Rev.: 4470

- generate a UniqueNameDetector before looping over files to import
Needed for new genome importer.
- when generating new names on import, maybe ask which nameserver to use
- fix: close button of import window closed ARB unconditionally if
import was used before from ARB intro or CLI

24 lines of code changed in 1 file:

• AWTI: AWTI_import.cxx (+24 -18)

westram 2007-04-18 19:04 #12 Rev.: 4469

- fixed changed result-type of GBS_read_arb_tcp()

17 lines of code changed in 1 file:

• AWTC: AWTC_next_neighbours.cxx (+17 -26)

westram 2007-04-18 19:02 #11 Rev.: 4468

- link adtcp.c

1 lines of code changed in 1 file:

• SOURCE_TOOLS: generate_all_links.sh (+1)

westram 2007-04-18 19:02 #10 Rev.: 4467

- warning fix

1 lines of code changed in 1 file:

• SL/AW_NAME: AW_names_admin.cxx (+1 -1)

westram 2007-04-18 18:57 #9 Rev.: 4466

- prototypes updated

9 lines of code changed in 2 files:

• ARBDB: ad_lpro.h (+2), ad_prot.h (+7 -3)

westram 2007-04-18 18:53 #8 Rev.: 4465

- depends updated

11 lines of code changed in 1 file:

• ARBDB: Makefile (+11)

westram 2007-04-18 18:53 #7 Rev.: 4464

- forward error-reason in gbcmc_open()

1 lines of code changed in 1 file:

• ARBDB: adsocket.c (+1 -1)

westram 2007-04-18 18:53 #6 Rev.: 4463

- added GBS_reuse_buffer() to "free" one of the static buffers for new usage
- moved arb_tcp.dat-related code to adtcp.c
- Changed error message on GB_internal_error()

84 lines of code changed in 1 file:

• ARBDB: adstring.c (+84 -176)

westram 2007-04-18 18:53 #5 Rev.: 4462

- moved arb_tcp.dat related functions from adstring.c
- read arb_tcp.dat only once (or when changed on disk)
- improved handling of errors in arb_tcp.dat
- added GBS_get_arb_tcp_entries() to query server ids

421 lines of code changed in 1 file:

• ARBDB: adtcp.c (new 421)

westram 2007-04-18 18:53 #4 Rev.: 4461

- added adtcp.o

1 lines of code changed in 1 file:

• ARBDB: AD_MOBJECTS.h (+1 -1)

westram 2007-04-15 06:46 #3 Rev.: 4460

- removed newline at end of output

2 lines of code changed in 1 file:

• SOURCE_TOOLS: grepx.pl (+2 -3)

westram 2007-04-12 12:12 #2 Rev.: 4459

- untabified+indented

256 lines of code changed in 1 file:

• NALIGNER: ali_pt.cxx (+256 -256)

westram 2007-04-12 11:52 #1 Rev.: 4458

- untabified

22 lines of code changed in 1 file:

• AWTC: AWTC_next_neighbours.cxx (+22 -22)

March 2007 »