2871 lines of code changed in 41 files:
-
Makefile (+3 -1)
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AWT:
AWT_sel_boxes.cxx (+5 -2)
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CONSENSUS_TREE:
CT_common.hxx (new 279),
CT_ctree.cxx (+104 -36),
CT_ctree.hxx (+21 -145),
CT_def.hxx (+8 -3),
CT_dtree.cxx (+89 -47),
CT_hash.cxx (+13 -4),
CT_hash.hxx (+3 -2),
CT_part.cxx (+201 -24),
CT_part.hxx (+33 -17),
Makefile (+38),
SyncRoot.cxx (new 529),
SyncRoot.hxx (new 178)
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CORE:
Makefile (+3),
arb_misc.cxx (+160)
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DIST:
DI_matr.cxx (+3 -1),
Makefile (+7)
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HEADERLIBS:
Makefile (+3 -2)
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HELP_SOURCE/oldhelp:
keeled_groups.hlp (+1),
mode_setroot.hlp (+1 -1),
syncroots.hlp (new 54)
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NTREE:
Makefile (+45),
NT_extern.cxx (+3 -2),
NT_local_proto.h (+3),
NT_syncroot.cxx (new 924)
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SL/MATRIX:
AP_matrix.cxx (+30 -32),
AP_matrix.hxx (+5 -19),
Makefile (+2)
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SL/NEIGHBOURJOIN:
Makefile (+1)
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SL/TREEDISP:
TreeDisplay.cxx (+1),
TreeDisplay.hxx (+1 -1)
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SOURCE_TOOLS:
generate_all_links.sh (+3)
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TEMPLATES:
ErrorOrType.h (+2 -2),
arb_error.h (+2),
arbtools.h (+3),
matrix.h (new 69)
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TOOLS:
Makefile (+1),
arb_consensus_tree.cxx (+1 -1)
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lib/pictures:
syncroot.fig (new 25)
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util:
arb_srclst.pl (+14 -2)