November 2011 Commit Log

Number of Commits:
37
Number of Active Developers:
2
westram 2011-11-30 14:20 Rev.: 8270


- fix conversion-null warnings

8 lines of code changed in 4 files:

westram 2011-11-30 12:32


* removed unused(-but-set) variables/params

9 lines of code changed in 5 files:

westram 2011-11-30 12:27 Rev.: 8267


* removed unused(-but-set) variables/params

3 lines of code changed in 3 files:

westram 2011-11-30 12:22 Rev.: 8266


* DRYed code in ED4_with_whole_block

6 lines of code changed in 1 file:

westram 2011-11-30 12:15 Rev.: 8265


* removed unused, experimental code (limiting the height of the top-area in EDIT4)

0 lines of code changed in 3 files:

westram 2011-11-30 12:13 Rev.: 8264


* removed unused(-but-set) variables/params

18 lines of code changed in 5 files:

westram 2011-11-30 12:02 Rev.: 8263


* moved parsing of GC properties (prefix chars) into own class

66 lines of code changed in 1 file:

westram 2011-11-30 11:14 Rev.: 8262


- removed unused(-but-set) variables/params

7 lines of code changed in 1 file:

westram 2011-11-30 10:02 Rev.: 8261


- removed unused(-but-set) variables/params

3 lines of code changed in 2 files:

westram 2011-11-30 09:55


- removed unused(-but-set) variables/params

12 lines of code changed in 2 files:

westram 2011-11-30 09:46 Rev.: 8258


- remove unused old test code

0 lines of code changed in 2 files:

westram 2011-11-29 17:42 Rev.: 8257


* removed unused(-but-set) variables/params

17 lines of code changed in 11 files:

westram 2011-11-29 14:23 Rev.: 8256


* removed unused(-but-set) variables/params

1 lines of code changed in 4 files:

westram 2011-11-29 14:13 Rev.: 8255


* removed unused(-but-set) variables/params
* fixed locals in touched functions

93 lines of code changed in 2 files:

westram 2011-11-29 13:16 Rev.: 8254


- removed unused(-but-set) variables/params

20 lines of code changed in 5 files:

westram 2011-11-29 12:34 Rev.: 8253


- fixed some global shadow warnings

28 lines of code changed in 6 files:

westram 2011-11-29 12:10 Rev.: 8252


- removed outdated example code

0 lines of code changed in 5 files:

westram 2011-11-29 11:35 Rev.: 8251


- removed using decls from headers

51 lines of code changed in 11 files:

westram 2011-11-29 10:50 Rev.: 8250


* extracted library for Location from GENOM_IMPORT
- removes cyclic dependency from GENOM <> GENOM_IMPORT
- makes GENOM_IMPORT, GENOM and AWTI testable
* remove duplicated dependency EDIT4->ITEMS

676 lines of code changed in 25 files:

westram 2011-11-29 09:33 Rev.: 8249


* wrap main for untested (but testable) units
- still untestable
* ptpan (wont change in this branch)
* GENOM (cyclic dependency with GENOM_IMPORT due to Location)
* fix missing lib dependencies
- DIST -> SL/NDS
- STAT -> SL/ITEMS
- AW_NAME -> libAWT (instead of libWINDOW)

46 lines of code changed in 17 files:

westram 2011-11-29 08:00 Rev.: 8248


- forgot file

1 lines of code changed in 1 file:

westram 2011-11-29 07:59 Rev.: 8247


* completes [8246]
- main-wrapper-objects
* compile with normal c-flags (fixes nightly cross-compilation error)
* compile for C and C++ (allows to link vs leftover C-compilations (e.g. arb_a2ps))
- changed main->ARB_main in TOOLS (fixes other broken nightly builds)
- remove experimental entry-point from unit-test-executables (leftover from failed approach, execution via custom entry-point does not init static data at all)
- corrected link printouts

65 lines of code changed in 16 files:

westram 2011-11-28 21:26 Rev.: 8246


* eliminated several main()'s from lib/obj-code
- replaced by ARB_main
- link executable with wrapper-object (main->ARB_main)
* unit-tests now use their own main()
- this ensures that all static data is initialized when the unit-test starts (previous behavior was working, but undefined)
- all tests pass (versus [8243])

86 lines of code changed in 29 files:

westram 2011-11-28 18:55 Rev.: 8245


- fix tests (static initialization in tests is undefined, since test itself starts via static initialization)
* TEST_BI_ecoli_ref
* TEST_plugin_found

6 lines of code changed in 2 files:

westram 2011-11-28 18:00 Rev.: 8244


- fix TEST_attribute_parser
* caused by undefined static-initialization order (that will most likely spread a bunch of new bugs into ARB)

3 lines of code changed in 1 file:

westram 2011-11-28 17:40 Rev.: 8243


- shadow warning

6 lines of code changed in 1 file:

westram 2011-11-28 17:38 Rev.: 8242


- sort libraries by inter-dependencies
* fixes linkage of unit tests

51 lines of code changed in 1 file:

westram 2011-11-28 13:42 Rev.: 8241


- use libmotif4
- changed way to add the ARB repository to sources.lst

3 lines of code changed in 1 file:

westram 2011-11-28 13:41 Rev.: 8240


- patch for ubuntu 11.10 oneiric / gcc 4.6.1 (thx to Kai)
* dont link PHYML statically
* dont strip symbols
* prefix linker flags passed via compiler with -Wl,

15 lines of code changed in 2 files:

westram 2011-11-23 16:26 Rev.: 8234


- defaults same as till [7668]

3 lines of code changed in 1 file:

westram 2011-11-23 16:21 Rev.: 8233


* AWT_canvas
- option to toggle whether text is considered in size-calculation (on zoom-reset)
* NTREE: added tree display options to toggle between traditional and new zoom-behavior
- defaults are
* similar to traditional behavior for dendro/irs-tree
* new behavior for radial tree

109 lines of code changed in 9 files:

epruesse 2011-11-18 10:15 Rev.: 8225

merge updates for SINA gui

132 lines of code changed in 1 file:

westram 2011-11-17 12:29 Rev.: 8220


- merged [8219] from dev

1167 lines of code changed in 6 files:

westram 2011-11-15 10:40 Rev.: 8217


- removed dead code

0 lines of code changed in 3 files:

westram 2011-11-11 17:51 Rev.: 8216


* fix #249 by reverting [7097/branches/refactor/PHYLO/PH_display.cxx]

0 lines of code changed in 1 file:

westram 2011-11-10 17:18 Rev.: 8212


merge from stable_5.0 [8207] [8210] [8211]
* refer to ubuntu 10.04 (lucid/LTS)
* drop suse version (no longer supported, got no up-to-date suse-machine)
* drop gcc <4.x

7 lines of code changed in 3 files:

westram 2011-11-10 10:30 Rev.: 8205


merge from stable_5.0 [8203]
* removed molphy (protml)

0 lines of code changed in 105 files:

October 2011 »

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