January 2008 Commit Log

Number of Commits:
32
Number of Active Developers:
3
westram 2008-01-29 17:33 Rev.: 5043

- warn about missing tree (not if tree is '????')

9 lines of code changed in 1 file:

westram 2008-01-29 17:33 Rev.: 5042

- automatically convert MAC/DOS linefeeds

2 lines of code changed in 1 file:

westram 2008-01-29 17:06 Rev.: 5041

- fixed indentation..

27 lines of code changed in 1 file:

westram 2008-01-24 18:11 Rev.: 5040

- template to accept GDE/*/Makefile.xxx
- ignore .swp

2 lines of code changed in 1 file:

westram 2008-01-24 18:03 Rev.: 5039

- can also mark by acc etc.
- option to ignore leading/trailing spaces

57 lines of code changed in 1 file:

westram 2008-01-24 10:39 Rev.: 5038

- skip sequence selection for 'start arb'

1 lines of code changed in 1 file:

westram 2008-01-24 10:39 Rev.: 5037

- skip sequence selection for import

1 lines of code changed in 1 file:

westram 2008-01-24 10:39 Rev.: 5036

- added tree-export + mention tree in comment of new tree
- export RAxML-style weights into extra file
- removed trailing spaces
- restrict to Protein alignments

18 lines of code changed in 1 file:

westram 2008-01-24 10:39 Rev.: 5035

- added tree-export + mention tree in comment of new tree
- export RAxML-style weights into extra file
- removed trailing spaces
- restrict to Nucleotide alignments

19 lines of code changed in 1 file:

westram 2008-01-24 10:39 Rev.: 5034

- added flag '-r' to export RAxML-style weights

163 lines of code changed in 1 file:

westram 2008-01-24 10:38 Rev.: 5033

- added AWAR_GDE_FILTER

4 lines of code changed in 1 file:

westram 2008-01-24 10:38 Rev.: 5032

- use defined AWAR

1 lines of code changed in 1 file:

westram 2008-01-24 10:38 Rev.: 5031

- updated

2 lines of code changed in 1 file:

westram 2008-01-24 10:38 Rev.: 5030

- use defined AWARs

5 lines of code changed in 1 file:

westram 2008-01-24 10:38 Rev.: 5029

- moved AWAR_GDE_FILTER to aw_awars.hxx

0 lines of code changed in 1 file:

westram 2008-01-24 10:38 Rev.: 5028

- mention seqtype '-'

7 lines of code changed in 2 files:

westram 2008-01-24 10:37 Rev.: 5027

- defined AWARs for GDE interface

29 lines of code changed in 1 file:

westram 2008-01-24 10:37 Rev.: 5026

- when seqtype is "-"
. skips sequence-related parts
. loads different menu
. skip compression and filter elements
- use defined AWARs

50 lines of code changed in 1 file:

meierh 2008-01-22 18:23 Rev.: 5025

add and remove raxml menue files

48 lines of code changed in 3 files:

meierh 2008-01-22 18:20 Rev.: 5024

raxmldna raxmlprotein menues introduced

2 lines of code changed in 1 file:

westram 2008-01-22 12:42 Rev.: 5023

- fixed identifiers starting with '_' (these are reserved)

2 lines of code changed in 1 file:

westram 2008-01-22 12:42 Rev.: 5022

- include stdint.h (need uint32_t)

4 lines of code changed in 2 files:

meierh 2008-01-22 12:14 Rev.: 5021

raxml7.0.0 introduce, RAxML5 removed

37908 lines of code changed in 39 files:

meierh 2008-01-18 18:50 Rev.: 5020

outputs now RAxML_result.treefile instead of RAxML_parsimonyTree.treefile

16 lines of code changed in 1 file:

baderk 2008-01-09 15:09 Rev.: 5019

Fixed indention and changed the xml-structure of sequence quality entries
into a tree structure. (Still some work to do here...)
See ticket #13 for more information.

304 lines of code changed in 1 file:

baderk 2008-01-08 15:56 Rev.: 5018

Fixed possible error in sequence quality tool (missing filter entries may
be misinterpreted as sequence positions).

8 lines of code changed in 1 file:

baderk 2008-01-08 11:32 Rev.: 5017

Fixed intention only - no change in the content.

204 lines of code changed in 9 files:

baderk 2008-01-03 11:45 Rev.: 5016

64bit conversion fix (int -> long).

1 lines of code changed in 1 file:

baderk 2008-01-03 10:58 Rev.: 5015

Code cleanup (readability).
Removed a growing memory leak which appears at each pt_server access.

11 lines of code changed in 1 file:

baderk 2008-01-03 10:56 Rev.: 5014

Code cleanup and speedup (char -> uint32_t).

42 lines of code changed in 2 files:

baderk 2008-01-03 10:54 Rev.: 5013

Cleanup (removed 'register' from typedefs).

9 lines of code changed in 1 file:

baderk 2008-01-03 10:53 Rev.: 5012

Code cleanup and speedup (memcpy/memset instead of native code).

13 lines of code changed in 1 file:

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