added rounding of double
27 lines of code changed in 2 files:
corrected think errors
added comments
73 lines of code changed in 2 files:
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65 lines of code changed in 6 files:
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19 lines of code changed in 3 files:
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80 lines of code changed in 2 files:
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4 lines of code changed in 1 file:
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29 lines of code changed in 1 file:
Linker flag changed from -fpic to -fPIC because google says -fpic may cause trouble on some architectures; ARB compiles now on solaris until it reaches ARB/PROBE_DESIGN/probe_design.cxx;
5 lines of code changed in 1 file:
calculation of weighted mismatch corrected in "double calc_position_wmis(int pos, int seq_len, double y1, double y2)"
1 lines of code changed in 1 file:
added functions to evaluate the consensus conformity and deviation
modified functions for average base calculationc to work with
rekursive structure
code cleanup
small bug fixes
343 lines of code changed in 4 files:
- fixed ErrorOut calls
16 lines of code changed in 1 file:
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1 lines of code changed in 1 file:
additional files that came with READSEQ
1671 lines of code changed in 4 files:
- perform gene unmarking only if answer comes from gene-pt-server
- gene/species unmarking and 'tmp'-field deletion done after parsing headline
(before we don't know whether it's a normal or a gene-pt-server!)
53 lines of code changed in 1 file:
- reactivated error message for stack pops
1 lines of code changed in 1 file:
- cleaning
- valgrinded
4 lines of code changed in 1 file:
- fixed error message
1 lines of code changed in 1 file:
- added AWT_arb_code_nr_2_embl_transl_table
5 lines of code changed in 2 files:
script to format dependency lines in Makefiles
113 lines of code changed in 1 file:
fixed and reformatted dependencies (using fix_depends.pl)
4311 lines of code changed in 70 files:
- dependency formatting now done by fix_depends.pl
13 lines of code changed in 4 files:
- removed 'ig' (Solaris does not like that)
1 lines of code changed in 1 file:
- changed include for SIG_PF
3 lines of code changed in 1 file:
- changed include for SIG_PF
- define aisc_assert
8 lines of code changed in 1 file:
include limits.h
1 lines of code changed in 1 file:
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45 lines of code changed in 3 files:
- cannot use strtok_r (not portable)
- cleanup, mem leaks
24 lines of code changed in 1 file:
deps updated
6 lines of code changed in 3 files:
undo
4 lines of code changed in 1 file:
was added by mistake
0 lines of code changed in 1 file:
again
1 lines of code changed in 1 file:
- removed 'ig' from sed call (Solaris doesn't like that)
2 lines of code changed in 2 files:
deps update
1 lines of code changed in 1 file:
- changed 'String' -> 'char*'
6 lines of code changed in 1 file:
- added many checks to detect why status window locks when running from debugger
- when pipe seems to be locked, then communication with status process
is stopped and a warning is displayed. Avoids the deadlocks which
occurred when debugging programs writing to status window.
- Fixed timeout calculation in aw_status_wait_for_open()
- create status window _before_ waiting for open command
(otherwise the timeout was reached under some circumstances)
209 lines of code changed in 1 file:
- added SIG_PF.h
1 lines of code changed in 1 file:
- moved here
- removed assert definition
29 lines of code changed in 1 file:
- changed PATH_MAX to FILENAME_MAX
5 lines of code changed in 1 file:
- moved to /TEMPLATES
0 lines of code changed in 1 file:
some (unnecessary) LFs removed from request
14 lines of code changed in 1 file:
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1 lines of code changed in 1 file:
renamed error function
18 lines of code changed in 8 files:
fixed error handling in arb_gde (aborted when evrything ok)
24 lines of code changed in 6 files:
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1 lines of code changed in 1 file:
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4 lines of code changed in 2 files:
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23 lines of code changed in 4 files:
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69 lines of code changed in 5 files:
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86 lines of code changed in 3 files:
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43 lines of code changed in 2 files: