November 2009 Commit Log

Number of Commits:
24
Number of Active Developers:
2
baderk 2009-11-30 12:15 Rev.: 6285

Karmic Koala (gcc 4.4.1) patch.

12 lines of code changed in 11 files:

westram 2009-11-25 18:16 Rev.: 6284


- 'ED4_ERROR*' -> 'GB_ERROR'

36 lines of code changed in 6 files:

westram 2009-11-25 16:58


- silenced several warnings

22 lines of code changed in 10 files:

westram 2009-11-25 16:29 Rev.: 6281


- oops (removed wrong file)

739 lines of code changed in 3 files:

westram 2009-11-25 16:02 Rev.: 6280


* merge clusters branch back to trunk
- merged log:branches/clusters@6218:6261 at [6268]
- merged [6276] + [6278] at [6279]

6823 lines of code changed in 179 files:

westram 2009-11-25 10:33 Rev.: 6279


* completely replaced GB_ERROR by ARB_ERROR in SL/FAST_ALIGNER
- replaced global error variable in ClustalV code by result (parameters)
* EDIT4
- route_down_hierarchy completely uses ARB_ERROR

272 lines of code changed in 14 files:

westram 2009-11-25 09:49 Rev.: 6277


* ARB_ERROR (drop-in replacement for GB_ERROR)
- checks for unused and overwritten errors in DEBUG mode
- nearly no overhead in NDEBUG mode
* added some error-delivery wrappers
- aw_message_if()
- GB_end_transaction_show_error()
- GB_end_transaction()
- GB_transaction.close()
* updated dependencies - majority of code depends on ARB_ERROR

585 lines of code changed in 37 files:

westram 2009-11-24 10:44 Rev.: 6274


- added macsetup script (thx to Matt Cottrell)

161 lines of code changed in 1 file:

westram 2009-11-24 10:07 Rev.: 6273


- removed error from ED4_work_info, instead return error from ED4_Edit_String::edit (the only place where work_info->error has been set)

ARB error handling is really FUBAR

17 lines of code changed in 4 files:

westram 2009-11-24 09:12 Rev.: 6272


- oops, dropped 2 errors

6 lines of code changed in 1 file:

westram 2009-11-24 08:33 Rev.: 6271


* route_down_hierarchy
- uses more usual callback type
- callback type returns GB_ERROR instead of ED4_returncode
- same for route_down_hierarchy itself
- as soon as one callback returns an error, the hierarchy traversion stops

160 lines of code changed in 9 files:

westram 2009-11-24 08:30 Rev.: 6270


- added GB_append_exportedError

19 lines of code changed in 2 files:

westram 2009-11-22 19:07 Rev.: 6268


- unused

0 lines of code changed in 1 file:

westram 2009-11-22 18:45 Rev.: 6267


* move some fast-aligner-related code to SL/FAST_ALIGNER
- AWTC_seq_search (quick search for equal parts in two sequences)
- AWTC_constructSequence (partly implementation as well using AWTC_seq_search code)

1614 lines of code changed in 13 files:

westram 2009-11-22 15:00 Rev.: 6266


- removed useless error results from n_decode and p_decode

2 lines of code changed in 1 file:

westram 2009-11-22 13:18 Rev.: 6265


- removed useless error results from n_encode and p_encode

12 lines of code changed in 1 file:

westram 2009-11-22 13:06 Rev.: 6264


- do not use GB_export_errorf(); completes [6262]

17 lines of code changed in 1 file:

westram 2009-11-21 14:24 Rev.: 6263


- removed deprecated function GB_get_error() aka get_error() from perl interface

20 lines of code changed in 11 files:

westram 2009-11-21 14:14 Rev.: 6262


* gb_security_error no longer exports error
* do not export errors from aligner

60 lines of code changed in 5 files:

westram 2009-11-19 19:27 Rev.: 6257


- backport [6256]

5 lines of code changed in 2 files:

westram 2009-11-12 10:20 Rev.: 6248


- assert global awars are generated in properties

2 lines of code changed in 1 file:

westram 2009-11-12 09:54 Rev.: 6247


* ARB_DIST
- added DEBUG menu
- install timer callback already in main window (otherwise global awars do not work)

35 lines of code changed in 2 files:

westram 2009-11-12 09:52 Rev.: 6246


* added free_arb_params()

16 lines of code changed in 2 files:

westram 2009-11-05 18:44 Rev.: 6239


- generally install xterm (thx elmar)

1 lines of code changed in 1 file:

October 2009 »

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