September 2018 Commit Log

Number of Commits:
33
Number of Active Developers:
2
westram 2018-09-20 18:17 Rev.: 17398


* adds a help page describing intended way to work with AA alignments in ARB

53 lines of code changed in 4 files:

westram 2018-09-20 17:43 Rev.: 17396


* reintegrates 'fix' into 'trunk'
- elim dead code
- use const hash loop
* adds: log:branches/fix@17380,17388:17395

270 lines of code changed in 58 files:

westram 2018-09-19 18:54 Rev.: 17388


* full update from child 'fix' into 'trunk'
- fixes bug in wildcard matcher
* adds: log:branches/fix@17381:17387

64 lines of code changed in 3 files:

westram 2018-09-19 08:18 Rev.: 17379


* document bug in wildcard string matcher (GBS_string_matches)

55 lines of code changed in 3 files:

westram 2018-09-18 16:30 Rev.: 17378


* allow to pass zero as separator to GBT_join_strings => join w/o separator

5 lines of code changed in 1 file:

westram 2018-09-18 10:08 Rev.: 17377


* do not use {{{&>>}}} (unknown by older bash versions)

1 lines of code changed in 1 file:

westram 2018-09-18 09:58 Rev.: 17376


* skip {{{-l}}} on DARWIN

7 lines of code changed in 1 file:

westram 2018-09-18 09:53 Rev.: 17375


* make sure that either {{{DARWIN=1}}} or {{{LINUX=1}}} in config.makefile

6 lines of code changed in 1 file:

westram 2018-09-14 17:09 Rev.: 17374


* improve errors reported if found no file(s) to import

17 lines of code changed in 1 file:

westram 2018-09-14 17:07 Rev.: 17373


* {{{GBS_read_dir}}}
- do not report errors caused by trying to be too smart
- optionally try finding files by appending mask to (wildcarded) name

19 lines of code changed in 1 file:

westram 2018-09-14 16:26 Rev.: 17372


* simplifies detectBrowserCommand

12 lines of code changed in 1 file:

westram 2018-09-14 16:18 Rev.: 17371


* file browser
- handle '?' like '*'
- improve parsing of browser-commands (fixes some weird error messages)
* avoid name clash with DB browser

42 lines of code changed in 2 files:

westram 2018-09-14 11:37 Rev.: 17370


* checked quality calculation (probe design):
- document more details
- added comments
- debug code to dump quality calculation

31 lines of code changed in 2 files:

westram 2018-09-13 12:56 Rev.: 17369


* fix unittest broken by [17364]

5 lines of code changed in 1 file:

westram 2018-09-13 10:48 Rev.: 17368


* avoid misleading errors when file-to-import is already selected while pressing 'Test'

1 lines of code changed in 1 file:

westram 2018-09-13 09:24 Rev.: 17367


* allow parallel calls to 'make tags'
- uses build-unique temporary files to avoid conflicts

11 lines of code changed in 1 file:

westram 2018-09-13 09:19 Rev.: 17366


* provide a build specific ID (ARBBID)
- different in each call to make
- constant in recursive calls (and submakefiles)

17 lines of code changed in 3 files:

westram 2018-09-13 08:43 Rev.: 17365


* svn-ignore temporary files used by target 'tags' (solves problems with some of my scripts)

2 lines of code changed in 1 file:

westram 2018-09-12 14:17 Rev.: 17364


* updated example macros in ARBHOME/lib/macros
- fixed broken identifiers
- deleted useless ones (replamb+test)
- renamed rest (prefix {{{demo__}}})
- added comments

78 lines of code changed in 8 files:

westram 2018-09-12 11:32 Rev.: 17363


* use marker from #741 (rel r17358)

2 lines of code changed in 1 file:

westram 2018-09-12 10:23 Rev.: 17362


* exception in RNACMA
- handle
- fix message

49 lines of code changed in 2 files:

westram 2018-09-12 09:54 Rev.: 17361


* fix {{{GB_xcmd}}} for OSX with SIP

22 lines of code changed in 3 files:

westram 2018-09-12 09:35 Rev.: 17360


* do not report error when patch directory not present
- caused failure of tarball-build with UNIT_TESTS=1

45 lines of code changed in 1 file:

westram 2018-09-11 14:22 Rev.: 17359


* fix two interdependent bugs in GBT_scan_db:
- non-container childs below caller-container (e.g. {{{/description}}} and {{{/genom_db}}} in unittested database) caused empty entries to be inserted into hash
- inserting empty entries caused re-addition of (previously added) entry - probably with wrong type
* should fix problems with unittest failing under OSX

30 lines of code changed in 1 file:

westram 2018-09-11 11:23 Rev.: 17358


* OSX unittest "fixes":
- TEST_open_socket (disabled; this test is a PITA anyway)
- results provided by regex lib versions differs (should test sth different)

16 lines of code changed in 2 files:

westram 2018-09-07 08:22 Rev.: 17356


* add ticket number

4 lines of code changed in 1 file:

westram 2018-09-06 08:19 Rev.: 17355


* fix {{{Conversion warnings occurred in Action}}} for fasttree
- "MODEL" used as variable name and as part of resulting tree-comment
- (side-effect: resets saved properties of model to default value)

3 lines of code changed in 1 file:

epruesse 2018-09-06 00:45 Rev.: 17354

Only use Inotify on Linux

OSX has FSEvents instead

3 lines of code changed in 1 file:

westram 2018-09-04 13:15 Rev.: 17353


* more details for example

10 lines of code changed in 1 file:

westram 2018-09-03 13:02 Rev.: 17350


* GUI cosmetic

7 lines of code changed in 1 file:

westram 2018-09-03 12:57 Rev.: 17349


* add + document configs for
- reporting transfer quality
- restoring original name (after quality has been reviewed)

15 lines of code changed in 3 files:

westram 2018-09-03 12:19 Rev.: 17348


* applying ACI to groupname only had an effect together with overwrite mode {{{KEEP_OLD_NAMES}}}. fixed.

26 lines of code changed in 3 files:

westram 2018-09-02 17:44 Rev.: 17345


* updated

3 lines of code changed in 1 file:

August 2018 »

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