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westram
2022-08-12 17:40
#9
Rev.: 19234
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409 lines of code changed in 12 files:
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GDE/RAxML8:
Makefile (+3 -1),
arb_raxml8.sh (+10 -29),
raxml8.menu (del)
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GDE/SATIVA:
Makefile (+3 -1),
sativa.menu (del)
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GDEHELP:
ARB_GDEmenus.source (+6 -2)
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GDEHELP/MENUS:
raxml.menu (del),
raxml7.menu (new 172),
raxml8.menu (new 107),
sativa.menu (new 99)
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lib/gde:
.gitignore (-2),
README (+9 -4)
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westram
2022-08-11 18:12
#8
Rev.: 19227
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1 lines of code changed in 1 file:
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GDEHELP:
ARB_GDEmenus.source (+1 -1)
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westram
2022-08-06 18:25
#7
Rev.: 19222
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92 lines of code changed in 8 files:
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ARBDB:
adali.cxx (+24 -19)
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EDIT4:
ED4_block.cxx (+7),
ED4_main.cxx (+1),
Makefile (+1)
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HELP_SOURCE/source:
split.hlp (+4)
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NTREE:
Makefile (+1),
NT_split_ali.cxx (+51 -10)
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WINDOW:
aw_awar_defs.hxx (+3 -2)
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westram
2022-08-06 14:23
#6
Rev.: 19218
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24 lines of code changed in 6 files:
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EDIT4:
ED4_block.cxx (+3 -3),
ED4_no_class.cxx (+2 -2),
ED4_root.cxx (+12 -12),
ED4_terminal.cxx (+1 -1),
ed4_class.hxx (+5 -5),
ed4_defs.hxx (+1 -1)
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westram
2022-08-06 14:22
#5
Rev.: 19217
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27 lines of code changed in 4 files:
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EDIT4:
ED4_manager.cxx (+1 -18),
ED4_root.cxx (+3 -16),
ED4_terminal.cxx (+22 -16),
ed4_defs.hxx (+1 -6)
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westram
2022-08-06 14:12
#4
Rev.: 19216
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98 lines of code changed in 9 files:
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EDIT4:
ED4_ProteinViewer.cxx (+1 -1),
ED4_block.cxx (+26 -26),
ED4_manager.cxx (+19 -19),
ED4_no_class.cxx (+3 -3),
ED4_root.cxx (+24 -24),
ED4_terminal.cxx (+10 -10),
ED4_text_terminals.cxx (+3 -3),
ed4_block.hxx (+2 -2),
ed4_class.hxx (+10 -10)
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westram
2022-08-06 14:09
#3
Rev.: 19215
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1 lines of code changed in 1 file:
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EDIT4:
ED4_block.cxx (+1 -1)
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westram
2022-08-06 14:08
#2
Rev.: 19214
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34 lines of code changed in 1 file:
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AWT:
AWT_input_mask.cxx (+34 -32)
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westram
2022-08-03 14:52
#1
Rev.: 19206
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1704 lines of code changed in 74 files:
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ARBDB:
Makefile (+1),
ad_t_prot.h (+2),
adali.cxx (+128 -25),
adlang1.cxx (+6 -4),
adseqcompr.cxx (+1 -2)
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ARB_GDE:
GDE.cxx (+17 -12),
GDE_arbdb_io.cxx (+4 -1)
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DIST:
DI_main.cxx (+4 -3),
DI_matr.cxx (+9 -3)
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EDIT4:
ED4_ProteinViewer.cxx (+141 -147),
ED4_base.cxx (+1 -1),
ED4_block.cxx (+1 -1),
ED4_cursor.cxx (+6 -6),
ED4_dots.cxx (+2 -2),
ED4_main.cxx (+1 -1),
ED4_manager.cxx (+1 -1),
ED4_no_class.cxx (+4 -4),
ED4_protein_2nd_structure.cxx (+1 -1),
ED4_root.cxx (+10 -8),
ED4_text_terminals.cxx (+2 -2),
ED4_visualizeSAI.cxx (+3 -5),
EDB_root_bact.cxx (+2 -2),
ed4_class.hxx (+3 -1)
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GENOM:
GEN_map.cxx (+16 -11)
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MERGE:
MG_alignment.cxx (+1 -1)
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MULTI_PROBE:
MP_Window.cxx (+11 -7)
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NALIGNER:
ali_arbdb.cxx (+10 -5)
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NTREE:
AP_consensus.cxx (+23 -10),
AP_pos_var_pars.cxx (+12 -9),
NT_concatenate.cxx (+26 -15),
NT_import.cxx (+1 -1),
NT_ins_col.cxx (+1 -1),
NT_split_ali.cxx (+1 -1),
ad_ext.cxx (+12 -12),
ad_spec.cxx (+107 -90)
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PARSIMONY:
PARS_dtree.cxx (+4 -2),
PARS_main.cxx (+13 -2)
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PHYLO:
Makefile (+1),
PH_data.cxx (+3 -1),
PH_filt.cxx (+11 -3),
PH_main.cxx (+22 -11)
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PRIMER_DESIGN:
primer_design.cxx (+22 -11)
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PROBE:
PT_io.cxx (+38 -32)
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PROBE_DESIGN:
SaiProbeVisualization.cxx (+120 -103),
probe_design.cxx (+156 -127)
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RNA3D:
RNA3D_StructureData.cxx (+108 -92)
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RNACMA:
AlignedSequenceLoader.cxx (+69 -65),
Analyser.cxx (+20 -16)
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SECEDIT:
SEC_db.cxx (+9 -3),
SEC_graphic.cxx (+6 -5)
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SEQ_QUALITY:
SQ_functions.cxx (+7 -15)
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SL/ALILINK:
TranslateRealign.cxx (+6 -4)
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SL/AW_NAME:
AW_rename.cxx (+112 -101)
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SL/DB_QUERY:
db_query.cxx (+10 -5)
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SL/FAST_ALIGNER:
fast_aligner.cxx (+28 -31)
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SL/FILTSEQEXP:
FilteredExport.cxx (+2)
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SL/GUI_ALIVIEW:
AWT_filter.cxx (+3 -1),
ColumnStat.cxx (+1 -1)
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SL/HELIX:
BI_basepos.cxx (+6 -3),
BI_helix.cxx (+30 -20),
BI_helix.hxx (+10 -9)
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SL/PTCLEAN:
ptclean.cxx (+6 -1)
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SL/PVP:
pvp.cxx (+3 -2)
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SL/SAICALC:
calculator.cxx (+14 -2)
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SL/SEQIO:
seq_export.cxx (+13 -5)
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SL/TREEDISP:
TreeCallbacks.cxx (+44 -13)
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TOOLS:
arb_2_bin.cxx (+10 -6),
arb_dnarates.cxx (+67 -62),
arb_export_rates.cxx (+118 -110),
arb_export_seq_filtered.cxx (+1),
arb_export_sequences.cxx (+37 -26)
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WINDOW:
aw_awar_defs.hxx (-1)
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lib/sellists:
README (+3 -1)