July 2013 Commit Log

Number of Commits:
75
Number of Active Developers:
3
westram 2013-07-31 11:57 Rev.: 10375


- xmkmf is unused

3 lines of code changed in 2 files:

aboeckma 2013-07-31 11:30 Rev.: 10374

svn ignore mafft script folder

1 lines of code changed in 1 file:

aboeckma 2013-07-31 11:29 Rev.: 10373

ignore contents of mafft binaries folder

1 lines of code changed in 1 file:

aboeckma 2013-07-31 11:15 Rev.: 10372

updated mafft version

5 lines of code changed in 95 files:

aboeckma 2013-07-31 11:14 Rev.: 10371

updated mafft version. Added extensions (no svn ignore, yet)

102322 lines of code changed in 143 files:

westram 2013-07-26 12:35 Rev.: 10364


- only keep RELEASE arb-tarball

4 lines of code changed in 1 file:

westram 2013-07-26 11:40 Rev.: 10363


* renamed mode RELEASE into NDEBUG (DEBUG=0,UNIT_TESTS=1)
* added mode RELEASE (DEBUG=0,UNIT_TESTS=0) - wanted userland edition

68 lines of code changed in 1 file:

westram 2013-07-26 08:54 Rev.: 10362


* '''force''' gcc for MAFFT

1 lines of code changed in 1 file:

westram 2013-07-26 08:48 Rev.: 10361


* force gcc for MAFFT

3 lines of code changed in 1 file:

westram 2013-07-26 08:45 Rev.: 10360


grml

1 lines of code changed in 1 file:

westram 2013-07-26 08:35 Rev.: 10359


* abort script, if unknown OSNAME or MODE used

33 lines of code changed in 1 file:

westram 2013-07-26 08:00 Rev.: 10358


- exit jenkins build on first error

1 lines of code changed in 1 file:

aboeckma 2013-07-24 09:53 Rev.: 10354

Removed absolut path from the call to test. On OSX test is not in /usr/bin. I think it is save to assume that test is part of the PATH an can be found without specifying the full path

2 lines of code changed in 1 file:

westram 2013-07-23 18:57 Rev.: 10351


* eliminate WINDOW code made obsolete by [10349]

1 lines of code changed in 3 files:

westram 2013-07-23 17:28 Rev.: 10349


* reintegrated branch 'dbui'
- change detachment of item-infowindows (removed several hacks)
- AW_detach_information and Awar_Callback_Info are now obsolete
- generalized a bit more of item-dependant code

640 lines of code changed in 26 files:

westram 2013-07-23 16:54 Rev.: 10348


* ignore a bunch of generated files
* also applied standard ignores (see SOURCE_TOOLS/svn_apply_ignores.pl)

33 lines of code changed in 1 file:

westram 2013-07-23 16:53 Rev.: 10347


* moved MAFFT to dependency-free GDE targets (fixes target 'depends')

1 lines of code changed in 1 file:

westram 2013-07-23 16:52 Rev.: 10346


* generation of source-tarball
- added possibility to strictly save SVN-files and strictly skip rest for specific subdirectories
* use that for MAFFT

57 lines of code changed in 1 file:

westram 2013-07-23 16:52 Rev.: 10345


- allow to temporarily disable check for modified files (helpful to fix failing 'post_commit_check')

6 lines of code changed in 1 file:

westram 2013-07-23 15:22 Rev.: 10344


- added target 'post_commit_check'

51 lines of code changed in 1 file:

aboeckma 2013-07-23 13:04 Rev.: 10343

Added mafft

55194 lines of code changed in 96 files:

aboeckma 2013-07-23 12:21 Rev.: 10340

added phyml-20130708 help

164 lines of code changed in 2 files:

aboeckma 2013-07-23 11:41 Rev.: 10339

Added menu for phyml-20130708 (Amino acids)

109 lines of code changed in 1 file:

aboeckma 2013-07-23 10:34 Rev.: 10338

Added Phyml-20130708 (dna) menu

98 lines of code changed in 1 file:

epruesse 2013-07-22 14:52 Rev.: 10337

show labels for selection lists created via GDE

3 lines of code changed in 1 file:

westram 2013-07-21 09:41 Rev.: 10324


- fix source list for phyml

6 lines of code changed in 1 file:

westram 2013-07-21 09:32 Rev.: 10323


- removed windows binaries

0 lines of code changed in 2 files:

westram 2013-07-19 16:53 Rev.: 10312


- allow subdirs w/o dependencies in GDE

11 lines of code changed in 1 file:

westram 2013-07-19 16:25 Rev.: 10311


- use SL instead of GDE to test dir-content

15 lines of code changed in 3 files:

aboeckma 2013-07-19 14:23 Rev.: 10308

Do not configure phyml on every build

17 lines of code changed in 1 file:

aboeckma 2013-07-19 14:02 Rev.: 10307

added most recent version of phyml

127508 lines of code changed in 117 files:

westram 2013-07-16 12:50 Rev.: 10284


* valgrinded tree reader
- use GBT_delete_tree (leaked in error case)

4 lines of code changed in 1 file:

westram 2013-07-16 12:23 Rev.: 10282


* added unit test reading corrupted tree file
- checks for proper failure
- failed till [10278]; succeeds now

92 lines of code changed in 4 files:

aboeckma 2013-07-16 12:22 Rev.: 10281

Use awar to change label of detach button

51 lines of code changed in 4 files:

westram 2013-07-16 11:45 Rev.: 10280


* GBT_delete_tree
- expects *& as param (value is set to NULL after delete)
- accept NULL as input

22 lines of code changed in 8 files:

westram 2013-07-16 11:36 Rev.: 10279


* avoid error gets overwritten in !TreeReader (failed assertion in DEBUG mode)
* avoid to free NULL-tree (GBT_delete_tree cant yet)

15 lines of code changed in 1 file:

westram 2013-07-16 08:06 Rev.: 10278


* fixed bug in correction of config name user input
- accepted overlong DB-keys (by prefixing "cfg_" after check)
- fixes #337

9 lines of code changed in 1 file:

westram 2013-07-15 10:40 Rev.: 10277


* no longer export errors from GB_check_hkey
- fix postcond-check failing in [10276]
- GBT_add_data
* now exports all(!) errors (previously only exported those returned+exported from GB_check_hkey, not those which were only returned)
* directly return failures to create ali-container (instead of reporting subsequent errors)
- gbt_scan_db_rek
* no longer need to clear error (after traversing internal key). instead skip recursion at internal container
* restore first key char (used to store type in hash) -> allows to check full key

37 lines of code changed in 3 files:

westram 2013-07-15 09:07 Rev.: 10276


* re-enable test with side-effects (and let it fail via post-condition-test)

1 lines of code changed in 1 file:

westram 2013-07-15 08:59 Rev.: 10275


* added a post-condition test for ARBDB
- check whether
* errors remain exported
* GB_shell remains open
- cleanup these problems

31 lines of code changed in 2 files:

westram 2013-07-15 08:56 Rev.: 10274


* added support for unit-test postconditions
- all functions named TEST_POSTCOND_... will be called after each(!) single unit test
- allows to check for violation of global data (e.g. undestroyed GB_shell, exported error)
- allows to cleanup behind failed tests (avoiding useless failures of other tests)
* added "Entering/leaving directory" wrapper (compile errors in UNIT_TESTER had wrong locations)

165 lines of code changed in 7 files:

westram 2013-07-12 15:23 Rev.: 10273


- disabled evil test

1 lines of code changed in 1 file:

westram 2013-07-12 11:41 Rev.: 10272


- added tests showing (hierarchical) key-checks and -generation does work properly

83 lines of code changed in 2 files:

westram 2013-07-11 17:07 Rev.: 10271


* fix #335
- activate test (written+working in [7813]; now succeeding again)

21 lines of code changed in 8 files:

westram 2013-07-11 16:39 Rev.: 10270


- fix compile error (u1304)

3 lines of code changed in 2 files:

westram 2013-07-11 16:13 Rev.: 10269


* added a unit test for genome file importer (currently disabled because it segfaults)
- test uses flatfile attached to #335
- expected test result has been generated with [7813] where importer still worked

998 lines of code changed in 5 files:

westram 2013-07-11 14:44 Rev.: 10267


* allow to reconfigure dbserver with new application ID

24 lines of code changed in 4 files:

westram 2013-07-11 14:43 Rev.: 10266


* made remote_awars copyable

8 lines of code changed in 1 file:

westram 2013-07-11 14:26 Rev.: 10265


* allocate !ArbImporter dynamically (when import window is opened)
* destroy !ArbImporter in all possible callbacks
- in all existing user callbacks
- in CLOSE callback of import window
* no longer return import-DB from AWTI_open_import_window
- instead use access functions to peek at or take ownership of import-DB
* after importing into a running DB, reset global database-pointers of merge-tool
* remove DB from DB-browser if it still is owned by AWTI
- AWT_browser_forget_db now accepts NULL ("forget nothing")
* fixes:
- assertion failures in GB_shell (caused by import-DB remaining unclosed in some execution paths)

110 lines of code changed in 6 files:

westram 2013-07-11 08:35 Rev.: 10257


- renames only

62 lines of code changed in 2 files:

westram 2013-07-11 08:16 Rev.: 10256


- renames only

18 lines of code changed in 6 files:

westram 2013-07-10 11:02 Rev.: 10253


* moved several functions into !ArbImporter (reducing usage of global 'awtcig')
* avoid classname clash (Importer -> !ArbImporter)

135 lines of code changed in 2 files:

westram 2013-07-10 09:20 Rev.: 10252


* use !RootCallback in Importer

25 lines of code changed in 5 files:

westram 2013-07-10 08:42 Rev.: 10251


- remove obfuscating define (GB_MAIN)

41 lines of code changed in 2 files:

westram 2013-07-09 12:54 Rev.: 10248


* store !WindowCallback in AW_MGC_cb_struct

9 lines of code changed in 1 file:

westram 2013-07-09 12:36 Rev.: 10247


* remove unused parameter name

1 lines of code changed in 1 file:

westram 2013-07-09 12:05 Rev.: 10245


* defined new typed callback type (!TimedCallback)
* AW_root::add_timed_callback... expects !TimedCallback

99 lines of code changed in 15 files:

westram 2013-07-09 08:47 Rev.: 10244


* adapt trunk AW_modal.cxx

2 lines of code changed in 1 file:

westram 2013-07-09 08:00 Rev.: 10242


* adapt trunk AW_root.cxx to gtk-code-moves

39 lines of code changed in 2 files:

westram 2013-07-06 21:28 Rev.: 10240


* move more code around like done in gtk-branch (to ease merging; only performed minimal changes)

2732 lines of code changed in 17 files:

westram 2013-07-05 20:09 Rev.: 10237


* store !WindowCallback inside AW_cb
* [at several locations] instead of comparing cb-function (of first cb in chain), check if cb is anywhere in chain using AW_cb::contains()
- should not change behavior (old code assumed there is only 1 cb in chain - AFAIK)

43 lines of code changed in 4 files:

westram 2013-07-05 18:56 Rev.: 10235


* use !WindowCallback in set_double_click_callback, set_popup_callback and set_focus_callback

24 lines of code changed in 5 files:

westram 2013-07-05 17:59 Rev.: 10233


* use !WindowCallback in set_motion_callback, set_vertical_change_callback and set_horizontal_change_callback

44 lines of code changed in 10 files:

westram 2013-07-05 17:27 Rev.: 10231


* set_input_callback uses !WindowCallback

15 lines of code changed in 8 files:

westram 2013-07-05 16:26 Rev.: 10228


* example adding+removing callback using !RootCallback

3 lines of code changed in 1 file:

westram 2013-07-05 16:25 Rev.: 10227


* add {{{AW_awar::remove_callback(RootCallback)}}}

8 lines of code changed in 3 files:

westram 2013-07-05 16:11 Rev.: 10225


* change sigs of several callbacks not using AW_CL or not even AW_root/AW_window

57 lines of code changed in 13 files:

westram 2013-07-05 14:38 Rev.: 10223


* replace AW_root_callback by !RootCallback

19 lines of code changed in 3 files:

westram 2013-07-05 13:56 Rev.: 10221


- removed duplicated callback typedefs

14 lines of code changed in 5 files:

westram 2013-07-04 15:49 Rev.: 10212


* depends for recent patches

530 lines of code changed in 37 files:

westram 2013-07-04 15:22 Rev.: 10209


* reintegrate branch 'bpcb' (examples; non-WINDOW)

59 lines of code changed in 18 files:

westram 2013-07-04 15:07 Rev.: 10207


* merge from bpcb [10188] [10189] [10196] (WINDOW: wrappers for common callback parameters)

110 lines of code changed in 20 files:

westram 2013-07-04 14:59 Rev.: 10206


* merge from bpcb [10181] [10186] (renames in WINDOW)

115 lines of code changed in 16 files:

westram 2013-07-04 14:46 Rev.: 10205


* merge from bpcb [10178] [10187] [10204] (typed callback templates)

960 lines of code changed in 14 files:

westram 2013-07-04 13:32 Rev.: 10201


merge from bpcb [10195] [10197] [10199]

197 lines of code changed in 1 file:

June 2013 »

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