March 2004 Commit Log

Number of Commits:
197
Number of Active Developers:
5
huberj 2004-03-30 16:45 Rev.: 2647

*** empty log message ***

2 lines of code changed in 1 file:

westram 2004-03-30 16:35 Rev.: 2646

- added some asserts

4 lines of code changed in 1 file:

westram 2004-03-30 16:35 Rev.: 2645

- added getSize

2 lines of code changed in 1 file:

westram 2004-03-30 16:34 Rev.: 2644

- added error (stdout)

2 lines of code changed in 1 file:

huberj 2004-03-30 16:16 Rev.: 2643

shrinked consensus by one

73 lines of code changed in 1 file:

westram 2004-03-30 15:49 Rev.: 2642

- import crashed if more than one potential target alignment existed
- potential leak stuffed

2 lines of code changed in 1 file:

westram 2004-03-30 15:48 Rev.: 2641

- leaks stuffed

2 lines of code changed in 1 file:

huberj 2004-03-30 15:17 Rev.: 2640

added X character to deviation

1 lines of code changed in 1 file:

westram 2004-03-30 14:52 Rev.: 2639

- GBT_read_sequence provides better error messages if pos_begin/pos_end are missing

40 lines of code changed in 1 file:

westram 2004-03-30 13:42 Rev.: 2638

- mention X as synonym for N

1 lines of code changed in 1 file:

westram 2004-03-30 13:42 Rev.: 2637

- added X as replacement for N

3 lines of code changed in 1 file:

westram 2004-03-30 10:19 Rev.: 2636

- added strcpy_overlapping

8 lines of code changed in 1 file:

westram 2004-03-30 10:18 Rev.: 2635

*** empty log message ***

1 lines of code changed in 1 file:

westram 2004-03-30 10:18 Rev.: 2634

- removed '[debug only]' from quality menu entry

1 lines of code changed in 1 file:

westram 2004-03-19 15:40 Rev.: 2633

- uses Toolkit for messages

24 lines of code changed in 9 files:

westram 2004-03-19 15:39 Rev.: 2632

- added some missing refreshes
- uses Toolkit for messages

13 lines of code changed in 1 file:

westram 2004-03-19 15:37 Rev.: 2630

- cleanup

0 lines of code changed in 1 file:

westram 2004-03-19 15:36 Rev.: 2629

- remove printArgs

0 lines of code changed in 1 file:

westram 2004-03-19 13:46 Rev.: 2628

- new parameter "debug=1"
- parameter "proxy" working

12 lines of code changed in 1 file:

westram 2004-03-19 13:46 Rev.: 2627

- handles proxy argument
- uses showDebugMessage

55 lines of code changed in 1 file:

westram 2004-03-19 13:46 Rev.: 2626

- added debug switches
- added add. test cases

35 lines of code changed in 1 file:

westram 2004-03-19 13:46 Rev.: 2625

- added setDebugMode and showDebugMessage

15 lines of code changed in 1 file:

westram 2004-03-19 13:45 Rev.: 2624

- indented
- getRootNode throws exception

222 lines of code changed in 1 file:

westram 2004-03-19 00:01 Rev.: 2623

- cleanup

3 lines of code changed in 1 file:

westram 2004-03-18 23:46 Rev.: 2622

- don't save tree rel. config parts if quitting before tree was initialized

13 lines of code changed in 1 file:

westram 2004-03-18 23:46 Rev.: 2621

- dont use Reader/Write - use InputStream/OutputStream

53 lines of code changed in 1 file:

westram 2004-03-18 20:58 Rev.: 2620

- use getTreeBinary.cgi and use content-type application/octet-stream

2 lines of code changed in 1 file:

westram 2004-03-18 20:58 Rev.: 2619

- show cause if tree loading fails

1 lines of code changed in 1 file:

westram 2004-03-18 20:58 Rev.: 2618

- binary version of getTree.cgi
(avoids character translation problem)

16 lines of code changed in 1 file:

westram 2004-03-18 20:58 Rev.: 2617

- increased client/interface version

3 lines of code changed in 1 file:

westram 2004-03-18 20:58 Rev.: 2616

- increase client+interface version

2 lines of code changed in 1 file:

westram 2004-03-18 20:20 Rev.: 2615

*** empty log message ***

10 lines of code changed in 1 file:

westram 2004-03-18 18:06 Rev.: 2614

- fix for member caching (didn't work with exact nodes)

2 lines of code changed in 1 file:

westram 2004-03-18 18:06 Rev.: 2613

- removed debug prints

53 lines of code changed in 1 file:

meierh 2004-03-18 16:33 Rev.: 2612

probe match enhanced

1 lines of code changed in 1 file:

meierh 2004-03-18 16:24 Rev.: 2611

probematch-search depth enhanced --> max 20

15 lines of code changed in 1 file:

yadhu 2004-03-18 15:43 Rev.: 2610

Changes to Sai Probe Visualization Module
1. Selection of species name when clicked on species name and respective probe.
2. Option to save and restore color definitions to property file, is added.
3. Valgrinded.
4. Updated help file.

160 lines of code changed in 5 files:

westram 2004-03-18 14:31 Rev.: 2609

- changed streaming method

83 lines of code changed in 1 file:

westram 2004-03-18 10:46 Rev.: 2608

- cleanup, added many debug prints
- internal func used by conductRequest + downloadZippedTree

101 lines of code changed in 1 file:

westram 2004-03-18 10:45 Rev.: 2607

- proxy-parameter [alpha]

25 lines of code changed in 1 file:

westram 2004-03-18 10:45 Rev.: 2606

- added proxy test target

16 lines of code changed in 1 file:

westram 2004-03-18 10:45 Rev.: 2605

- cosmetics

3 lines of code changed in 1 file:

westram 2004-03-17 16:15 Rev.: 2604

- shortened error message

1 lines of code changed in 1 file:

westram 2004-03-17 16:15 Rev.: 2603

- added findFixedFont to detect a real fixed font
(or the best non-fixed) [code is disabled]

45 lines of code changed in 1 file:

westram 2004-03-17 16:15 Rev.: 2602

- remove debug print
- changed faked tree version

2 lines of code changed in 1 file:

westram 2004-03-17 16:14 Rev.: 2601

- only uses URL + HttpURLConnection to access the server

183 lines of code changed in 1 file:

westram 2004-03-17 01:23 Rev.: 2600

*** empty log message ***

12 lines of code changed in 2 files:

westram 2004-03-16 23:47 Rev.: 2599

warning fix

1 lines of code changed in 1 file:

westram 2004-03-16 23:47 Rev.: 2598

- updated

7 lines of code changed in 1 file:

westram 2004-03-16 23:46 Rev.: 2597

- changed some function names (autoprototypefriendly)
- try to popdown ali-selection on MODIFY [not working yet]

13 lines of code changed in 1 file:

westram 2004-03-16 23:46 Rev.: 2596

- pass alignment selection to create_alignment_window
- removed prototype + include nt_internal.h

3 lines of code changed in 1 file:

westram 2004-03-16 23:46 Rev.: 2595

- changed some function names (autoprototypefriendly)

17 lines of code changed in 3 files:

westram 2004-03-16 23:40 Rev.: 2594

ad_ext.hxx and ad_ali.hxx deleted

1 lines of code changed in 2 files:

westram 2004-03-16 23:37 Rev.: 2593

- obsolete

0 lines of code changed in 2 files:

westram 2004-03-16 23:36 Rev.: 2592

- added ED4_BO_UNALIGN_RIGHT

1 lines of code changed in 1 file:

westram 2004-03-16 23:36 Rev.: 2591

- removed obsolete include

0 lines of code changed in 1 file:

westram 2004-03-16 23:36 Rev.: 2590

- fixed call to GBT_reverseComplementNucSequence
- added 'Unalign block right'

4 lines of code changed in 1 file:

westram 2004-03-16 23:26 Rev.: 2589

- added second function to unalign to the right
- added ED4_BO_UNALIGN_RIGHT

32 lines of code changed in 1 file:

westram 2004-03-16 23:24 Rev.: 2588

- fixed call to GBT_reverseComplementNucSequence

19 lines of code changed in 2 files:

westram 2004-03-16 19:15 Rev.: 2587

- disabled repeat counting (Xfree 4.3 has problems)

3 lines of code changed in 1 file:

westram 2004-03-16 16:25 Rev.: 2586

- creation of TAGS via temp. file

11 lines of code changed in 1 file:

westram 2004-03-16 16:20 Rev.: 2585

- diagnostic exceptions for countMarked()
- fixed getNoOfLeaves()

18 lines of code changed in 1 file:

westram 2004-03-16 16:19 Rev.: 2584

- exception forwarded

1 lines of code changed in 1 file:

westram 2004-03-16 16:18 Rev.: 2583

- new members tree_toolbar and probe_toolbar + access functions

21 lines of code changed in 1 file:

westram 2004-03-16 16:18 Rev.: 2582

- added set_OL_enabled

12 lines of code changed in 1 file:

westram 2004-03-16 16:17 Rev.: 2581

- disable sort criteria when overlap is switched off
- en/disables button according to overlap

10 lines of code changed in 1 file:

westram 2004-03-16 16:16 Rev.: 2580

- added removeCompareOrder
- additional check whether probe is inner part of sel.probe

55 lines of code changed in 1 file:

westram 2004-03-16 16:16 Rev.: 2579

- cosmetics

2 lines of code changed in 1 file:

westram 2004-03-15 18:52 Rev.: 2578

- catches Exceptions in showError + showMessage

22 lines of code changed in 1 file:

westram 2004-03-15 18:52 Rev.: 2577

- crashed on first startup :(

24 lines of code changed in 1 file:

westram 2004-03-15 14:36 Rev.: 2576

*** empty log message ***

1 lines of code changed in 1 file:

westram 2004-03-15 14:35 Rev.: 2575

- client version raised to 1.1

1 lines of code changed in 1 file:

westram 2004-03-15 14:33 Rev.: 2574

- changed button order

8 lines of code changed in 1 file:

westram 2004-03-15 14:33 Rev.: 2573

- new parameter for setMatchedNode: preferredProbe
- slight changes for countMarkedSpecies

8 lines of code changed in 1 file:

westram 2004-03-15 14:33 Rev.: 2572

- client version 1.1

2 lines of code changed in 1 file:

westram 2004-03-15 14:32 Rev.: 2571

- added getSelectedProbe
- new parameter for setContents: preferredProbe
if != null -> overrides lastSelectedProbe

9 lines of code changed in 1 file:

westram 2004-03-15 14:30 Rev.: 2570

- saves+restores selected probe
- new parameter for updateNodeInformation: preferredProbe

13 lines of code changed in 1 file:

westram 2004-03-15 12:31 Rev.: 2569

*** empty log message ***

12 lines of code changed in 1 file:

westram 2004-03-15 12:30 Rev.: 2568

- folding and visible/lastmatched subtree saved&restored in/from config
- added initialize() instead of doing everything in main()
- silently append trailing slash to URL

120 lines of code changed in 1 file:

westram 2004-03-15 12:30 Rev.: 2567

- clientName only defined here!

2 lines of code changed in 1 file:

westram 2004-03-15 12:27 Rev.: 2566

- removed parameter for getNodeProbes() - known by TreeNode itself
- added cacheAllHits()
- added findNodeByBinaryPath
- added storeFolding(), restoreFolding()
- moved encodePath to Toolkit.java

50 lines of code changed in 1 file:

westram 2004-03-15 12:25 Rev.: 2565

- added getLastMatchedNode() + getVisibleSubtree()
- added getFolding() + setFolding()
- added setMatchedNode()
- added findNodeByBinaryPath + findNodeByCodedPath
- added refresh and myRepaint (using delayed repaint())

70 lines of code changed in 1 file:

westram 2004-03-15 12:22 Rev.: 2564

- moved encodePath here (as well used for config strings)
- added decodePath, compressString, uncompressString

87 lines of code changed in 1 file:

westram 2004-03-15 12:22 Rev.: 2563

- defines fixed Font for probe list
- showHelp() prints into details window

13 lines of code changed in 1 file:

westram 2004-03-15 12:19 Rev.: 2562

- added 'Cache' button

3 lines of code changed in 1 file:

westram 2004-03-15 12:18 Rev.: 2561

- quick help

8 lines of code changed in 1 file:

westram 2004-03-15 12:17 Rev.: 2560

- new ctor parameter: Font
- cleanup

5 lines of code changed in 1 file:

westram 2004-03-15 12:17 Rev.: 2559

- added cacheAllHits()

12 lines of code changed in 1 file:

westram 2004-03-15 12:16 Rev.: 2558

- indentation & spacing
- '--help' also shows help

30 lines of code changed in 1 file:

westram 2004-03-14 15:31 Rev.: 2557

updated

2 lines of code changed in 1 file:

westram 2004-03-14 15:28 Rev.: 2556

- indented
- added getIntValue()

17 lines of code changed in 1 file:

westram 2004-03-14 15:28 Rev.: 2555

- actively sets size of ScrollPane
- commented debug output

7 lines of code changed in 1 file:

westram 2004-03-14 15:28 Rev.: 2554

- added selectLastSelectedProbe(), deselectCurrent()
- deselection/selection on all changes of list contents
- resort in setContents (because cached results may have different sort-order)
- error if sorting by overlap without active overlap

66 lines of code changed in 1 file:

westram 2004-03-14 15:28 Rev.: 2553

- displays length for overlap probe (not value which is 99)

3 lines of code changed in 1 file:

westram 2004-03-14 15:28 Rev.: 2552

- cosmetics

3 lines of code changed in 1 file:

westram 2004-03-14 15:27 Rev.: 2551

- commented debug output

6 lines of code changed in 2 files:

westram 2004-03-14 15:27 Rev.: 2550

- catch exception on saveConfig

6 lines of code changed in 1 file:

westram 2004-03-14 11:13 Rev.: 2549

- getSortedIndexOf() to detect current index of a probe

13 lines of code changed in 1 file:

westram 2004-03-14 11:12 Rev.: 2548

- save and load config (stores location and size of appl)
- code related to sizing & placement in sep. function

95 lines of code changed in 1 file:

westram 2004-03-13 15:17 Rev.: 2547

size fiddling :(

172 lines of code changed in 3 files:

westram 2004-03-12 12:38 Rev.: 2546

added -deprecation

2 lines of code changed in 1 file:

westram 2004-03-12 11:45 Rev.: 2545

- never wants to be wider than ScrollPane

23 lines of code changed in 1 file:

westram 2004-03-12 11:45 Rev.: 2544

- set smaller initial size (it's only a first hint)
- max_display_ysize reduces (does not work with Win98)

4 lines of code changed in 1 file:

westram 2004-03-12 11:44 Rev.: 2543

- gets wanted size as parameter
- ScrollPane does not prefer to have size of contained canvas
- many weird calculations to approx. create a frame of wanted size

69 lines of code changed in 1 file:

westram 2004-03-12 11:44 Rev.: 2542

- detect current screen width
- call ProbesGUI with wanted size

23 lines of code changed in 1 file:

huberj 2004-03-12 11:18 Rev.: 2541

added comments

7 lines of code changed in 3 files:

westram 2004-03-12 00:31 Rev.: 2540

include fix

1 lines of code changed in 1 file:

westram 2004-03-12 00:31 Rev.: 2539

- include fix

3 lines of code changed in 1 file:

westram 2004-03-12 00:31 Rev.: 2538

- new option '-noprobe' to skip creation of probe-database;
only calculate groups
- reopens existing databases
- fixed a bug in propagateExactSubtrees: subbranches of branches
with exact matches were not considered

69 lines of code changed in 1 file:

westram 2004-03-12 00:28 Rev.: 2537

nomen est omen

3 lines of code changed in 1 file:

westram 2004-03-12 00:27 Rev.: 2536

- same as server_databases_rebuild.sh - but skips probe_match

160 lines of code changed in 1 file:

westram 2004-03-12 00:27 Rev.: 2535

- renamed from update_probe_server_databases.sh
- added warning

216 lines of code changed in 1 file:

westram 2004-03-12 00:25 Rev.: 2533

- can be used from local dir to build all needed libs and binaries

19 lines of code changed in 1 file:

westram 2004-03-12 00:24 Rev.: 2532

- removed general dependency from nt_date.h (caused a daily recompile of arb_ntree)

0 lines of code changed in 1 file:

westram 2004-03-12 00:24 Rev.: 2531

- spelling

1 lines of code changed in 1 file:

westram 2004-03-12 00:23 Rev.: 2530

- cosmetics
- test code for ReadingBuffer
- fixed a bug in ReadingBuffer: unused_reading_buffers pointed to freed memory,
it crashed if 2 bigger ascii-databases were read

34 lines of code changed in 1 file:

westram 2004-03-12 00:22 Rev.: 2529

- added *.java files

34 lines of code changed in 1 file:

westram 2004-03-12 00:18

*** empty log message ***

8 lines of code changed in 2 files:

westram 2004-03-12 00:18 Rev.: 2526

- uses DialogDriver for error+abort

28 lines of code changed in 1 file:

westram 2004-03-12 00:17 Rev.: 2525

- removed display of non-group-hits because thay are not calculated yet

2 lines of code changed in 1 file:

westram 2004-03-12 00:17 Rev.: 2524

- added dialog functions

48 lines of code changed in 1 file:

westram 2004-03-12 00:17 Rev.: 2523

- compilation fix
- indentation fixed
- dialog window had zero size (with fvwm)
- splits text at \n

72 lines of code changed in 1 file:

richter 2004-03-11 19:21 Rev.: 2521

Introduction of wrapper class for simple modal dialogs
Accepts a vector of strings for the buttons and returns the clicked button's name
see DialogDriver.java for usage

31 lines of code changed in 2 files:

westram 2004-03-11 14:02 Rev.: 2520

- renamed target 'doc' -> 'source_doc' (doc exists as directory)

2 lines of code changed in 1 file:

westram 2004-03-11 14:02 Rev.: 2519

depends updated

3 lines of code changed in 2 files:

westram 2004-03-11 14:00 Rev.: 2518

- cleanup

18 lines of code changed in 1 file:

westram 2004-03-11 13:59 Rev.: 2517

- fixed encoding in generated html
- generated code now indented

7 lines of code changed in 1 file:

westram 2004-03-11 13:58 Rev.: 2516

- different way to create date.xsl
- set time locate to 'c' before printing date

7 lines of code changed in 1 file:

westram 2004-03-11 13:57 Rev.: 2515

- do not include stdio.h (do error instead)
- refuse to include twice

6 lines of code changed in 1 file:

westram 2004-03-11 13:57 Rev.: 2514

- cosmetics

1 lines of code changed in 1 file:

westram 2004-03-11 13:57 Rev.: 2513

- added comment about flag 'N'

2 lines of code changed in 1 file:

westram 2004-03-11 13:56 Rev.: 2512

- include fixes

59 lines of code changed in 26 files:

westram 2004-03-11 10:49 Rev.: 2511

oops wrong version

1 lines of code changed in 1 file:

westram 2004-03-11 10:40 Rev.: 2510

- new methods: autofold(), autounfold(), lowermostChild(), uppermostChild(),
getPreviousLeaf(), getHeight(), contains(), hasAnchestor()

135 lines of code changed in 1 file:

westram 2004-03-11 10:39 Rev.: 2509

- repeated calls to autofold() to reduce display height (has to be < 32768)
- indicates last clicked and last folded node

91 lines of code changed in 1 file:

westram 2004-03-11 10:36 Rev.: 2508

- added interface_version

12 lines of code changed in 2 files:

westram 2004-03-11 10:35 Rev.: 2507

- function moved to client

2 lines of code changed in 1 file:

westram 2004-03-11 10:35 Rev.: 2506

- re-enables Frame after OK has been pressed

6 lines of code changed in 1 file:

westram 2004-03-11 10:34 Rev.: 2505

- client and interface version: separate parsing + access functions

16 lines of code changed in 1 file:

westram 2004-03-11 10:33 Rev.: 2504

- separate checks for client and interface version
- 'Clear' button functionality moved here

16 lines of code changed in 1 file:

westram 2004-03-11 10:32 Rev.: 2503

- to detect a node for autofolding
- stores POIs (points of interest)

0 lines of code changed in 1 file:

westram 2004-03-10 17:10 Rev.: 2502

*** empty log message ***

6 lines of code changed in 1 file:

westram 2004-03-10 17:09 Rev.: 2501

- added scalebar
- print size of tree to stdout (need Windows debugging)

27 lines of code changed in 1 file:

westram 2004-03-10 14:29 Rev.: 2500

- removed debug prints

7 lines of code changed in 2 files:

westram 2004-03-10 14:29 Rev.: 2499

- indented
- removed LFs

31 lines of code changed in 1 file:

westram 2004-03-10 13:43 Rev.: 2498

spelling

1 lines of code changed in 1 file:

westram 2004-03-10 13:43 Rev.: 2497

- upgraded expected client version to version 1.0

1 lines of code changed in 1 file:

westram 2004-03-10 13:38 Rev.: 2496

*** empty log message ***

35 lines of code changed in 3 files:

westram 2004-03-10 13:38 Rev.: 2495

- cleanup

0 lines of code changed in 1 file:

westram 2004-03-10 13:38 Rev.: 2494

- added searchAndMark
- cleanup

48 lines of code changed in 1 file:

westram 2004-03-10 13:38 Rev.: 2493

- minimum value for xSpreading
- simplified functions to set visibleSubtree
- added searchAndMark() and unfoldMarkedFoldRest()

94 lines of code changed in 1 file:

westram 2004-03-10 13:38 Rev.: 2492

- cleanup
- added showError() and showMessage()

18 lines of code changed in 1 file:

westram 2004-03-10 13:37 Rev.: 2491

- added toggleOverlap, showHelp
- added toolbars
- removed IOManager

56 lines of code changed in 1 file:

westram 2004-03-10 13:37 Rev.: 2490

- moved code for saving to Client.java
- event handler catches Exceptions

55 lines of code changed in 1 file:

westram 2004-03-10 13:37 Rev.: 2489

- strip out overlaps between probes
- made Probe a Comparable and added funtionality for different, cascading sort criteria

194 lines of code changed in 1 file:

westram 2004-03-10 13:37 Rev.: 2488

- probes are sorted now

15 lines of code changed in 1 file:

westram 2004-03-10 13:37 Rev.: 2487

- replaced duplicated code by functions
- throws exceptions
- removed configfile specials

57 lines of code changed in 1 file:

westram 2004-03-10 13:36 Rev.: 2486

- added save functions
- cleanup

56 lines of code changed in 1 file:

westram 2004-03-10 13:36 Rev.: 2485

- toolbar for tree functions

4 lines of code changed in 1 file:

westram 2004-03-10 13:36 Rev.: 2484

- toolbar for probe list(s)

2 lines of code changed in 1 file:

westram 2004-03-10 13:35 Rev.: 2482

- added refreshList(), setSort(), resort() and selectProbe()
- ActionListener is now anonymous class

93 lines of code changed in 1 file:

westram 2004-03-10 13:34 Rev.: 2481

- added target 'tags'

7 lines of code changed in 1 file:

richter 2004-03-09 20:08 Rev.: 2480

Integration of functions to save results:
-details and probe list in separate files,
-saving of configuration in the same way possible by using result type string
-all output is written as one string to disk
-no confirmation dialog on selection of already existing files yet
-no confirmation dialog abort or save failure yet

154 lines of code changed in 6 files:

westram 2004-03-08 16:24 Rev.: 2479

*** empty log message ***

4 lines of code changed in 1 file:

westram 2004-03-08 16:24 Rev.: 2478

- added 'folded' flag
- replaced 'childNodes' by upperSon/lowerSon
- many changes due to changed son-access
- many tree-folding functions
- removed 'grouped' flag
- added groupName + access functions

233 lines of code changed in 1 file:

westram 2004-03-08 16:24 Rev.: 2477

- tree width automatically adjusts to display width
- tree folding at groups + many folding functions
- groups occupy more space than leafs
- code for clicking group close-box
- removed depth, treeLevels
- left mouse click unfolds folded groups
- at least resize canvas to size of parent
- calculate xPointer (analog yPointer)

450 lines of code changed in 1 file:

westram 2004-03-08 16:23 Rev.: 2475

- cosmetics
- removed ProbesGUIActionListener + treeLevels

11 lines of code changed in 1 file:

westram 2004-03-08 16:23 Rev.: 2474

- implements old ProbesGUIActionListener as
anonymous class
- menu-def and command-execution now are next to each other
- new menus mark/fold/search
- many tree folding commands

110 lines of code changed in 1 file:

westram 2004-03-08 16:23 Rev.: 2473

- removed deprecated function

2 lines of code changed in 1 file:

westram 2004-03-08 16:23 Rev.: 2472

- also links Module$*.class
- comment + cleanup

13 lines of code changed in 1 file:

westram 2004-03-08 16:22 Rev.: 2471

- cosmetics
- added isAtLeft() to detect group-box click

12 lines of code changed in 1 file:

westram 2004-03-08 16:22 Rev.: 2470

- cosmetics

10 lines of code changed in 1 file:

richter 2004-03-08 13:53 Rev.: 2469

first prototype of IOManager added
IOManager acts as wrapper for file input/output operations
not integrated with menu yet
I added this at this stage just for completeness reasons

66 lines of code changed in 2 files:

westram 2004-03-05 22:26 Rev.: 2468

- probes are handled in class Probe
- everything is cached
- layout changed

1225 lines of code changed in 10 files:

westram 2004-03-05 22:24 Rev.: 2467

- forwards message of catched exception

2 lines of code changed in 2 files:

westram 2004-03-05 22:23 Rev.: 2466

*** empty log message ***

46 lines of code changed in 4 files:

westram 2004-03-05 22:21 Rev.: 2465

- throws ClientException

8 lines of code changed in 1 file:

westram 2004-03-05 22:21 Rev.: 2464

- automatically splits lines at \n

50 lines of code changed in 1 file:

westram 2004-03-04 12:13 Rev.: 2463

- getNoOfLeaves caches information

12 lines of code changed in 1 file:

westram 2004-03-04 12:13 Rev.: 2462

- forwards and handles exceptions
- added setRootNode (allows delayed initialization of tree)

93 lines of code changed in 1 file:

westram 2004-03-04 12:13 Rev.: 2461

- Abort-functions throw exceptions instead of printing/aborting

50 lines of code changed in 1 file:

westram 2004-03-04 12:13 Rev.: 2460

- forwards exceptions
- tree needs not be passed at construction.
That allows GUI to come up to show startup errors if
user has no visible console window.

11 lines of code changed in 1 file:

westram 2004-03-04 12:12 Rev.: 2459

- links *.class to catch anonymous classes

2 lines of code changed in 1 file:

westram 2004-03-04 12:12 Rev.: 2458

- forwards exceptions

31 lines of code changed in 8 files:

westram 2004-03-04 12:12 Rev.: 2457

- uses StringBuffer (performance!)
- forwards exceptions

26 lines of code changed in 1 file:

westram 2004-03-04 12:12 Rev.: 2456

- mark species before printing details
- uses StringBuffer to build details (better performance!)
- detail display knows 3 different "states"

151 lines of code changed in 1 file:

westram 2004-03-04 12:04 Rev.: 2455

*** empty log message ***

6 lines of code changed in 1 file:

westram 2004-03-04 11:58 Rev.: 2454

- simple popup with ok button

29 lines of code changed in 1 file:

yadhu 2004-03-03 17:41 Rev.: 2453

Visualization of SAIs in Probe Match Results
1. Updated help file !

38 lines of code changed in 1 file:

yadhu 2004-03-03 17:26 Rev.: 2452

Changes to Visualization of SAIs in Probe Match Results.
1. Warnings Fixed.
2. Instant display refreshing.
3. Added option to display SAI values below each probe targets displayed.

91 lines of code changed in 4 files:

westram 2004-03-03 14:16 Rev.: 2451

part of update script (to be called if only client changed)

27 lines of code changed in 1 file:

westram 2004-03-03 14:08 Rev.: 2450

- uses seperate directories for different test cases

8 lines of code changed in 1 file:

westram 2004-03-03 14:08 Rev.: 2449

- markSpecies uses SpeciesName->TreeNode HashMap to speed up marking
- markSubtree only optionally unmarks rest of tree

19 lines of code changed in 1 file:

westram 2004-03-03 14:08 Rev.: 2448

- added getShortNameHash
- changed call to markSpecies
- always unmark before mark (because markSpecies does no longer clear marks of rest)

16 lines of code changed in 1 file:

westram 2004-03-02 23:20 Rev.: 2447

- fixed progress indicator

4 lines of code changed in 1 file:

westram 2004-03-02 13:36 Rev.: 2446

- changed final URL

3 lines of code changed in 1 file:

westram 2004-03-02 13:36 Rev.: 2445

- added master server test
- explicit URLs for all tests

16 lines of code changed in 1 file:

February 2004 »

Generated by StatSVN 0.7.0