/trunk Developers: baderk

Login name:
baderk
Total Commits:
501 (1.1%)
Lines of Code:
22,075 (0.9%)
Most Recent Commit:
2011-09-27 16:44
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 501 (100.0%) 22075 (100.0%) 44.0
PGT/ 86 (17.2%) 11111 (50.3%) 129.1
SEQ_QUALITY/ 87 (17.4%) 5241 (23.7%) 60.2
WINDOW/ 12 (2.4%) 1927 (8.7%) 160.5
CHIP/ 25 (5.0%) 1206 (5.5%) 48.2
lib/pixmaps/ 14 (2.8%) 994 (4.5%) 71.0
STAT/ 12 (2.4%) 950 (4.3%) 79.1
PROBE/ 20 (4.0%) 198 (0.9%) 9.9
lib/pictures/ 7 (1.4%) 132 (0.6%) 18.8
lib/pixmaps/pgt/ 1 (0.2%) 60 (0.3%) 60.0
ARBDB/ 15 (3.0%) 59 (0.3%) 3.9
EDIT4/ 5 (1.0%) 22 (0.1%) 4.4
MERGE/ 2 (0.4%) 19 (0.1%) 9.5
/ 17 (3.4%) 18 (0.1%) 1.0
SL/DB_SCANNER/ 2 (0.4%) 14 (0.1%) 7.0
GENOM/ 2 (0.4%) 14 (0.1%) 7.0
TOOLS/ 6 (1.2%) 9 (0.0%) 1.5
AWTI/ 3 (0.6%) 9 (0.0%) 3.0
SERVERCNTRL/ 4 (0.8%) 8 (0.0%) 2.0
RNA3D/ 4 (0.8%) 8 (0.0%) 2.0
GDE/TREEPUZZLE/src/ 3 (0.6%) 8 (0.0%) 2.6
GENOM_IMPORT/ 2 (0.4%) 7 (0.0%) 3.5
ALEIO/ 7 (1.4%) 7 (0.0%) 1.0
lib/pixmaps/edit/ 3 (0.6%) 6 (0.0%) 2.0
AISC_COM/C/ 2 (0.4%) 6 (0.0%) 3.0
NTREE/ 6 (1.2%) 4 (0.0%) 0.6
GDEHELP/MENUS/ 2 (0.4%) 4 (0.0%) 2.0
SEER/ 3 (0.6%) 3 (0.0%) 1.0
PROBE_SERVER/TREE_MERGE/ 3 (0.6%) 3 (0.0%) 1.0
PROBE_SERVER/PROBE_GROUP/ 8 (1.6%) 3 (0.0%) 0.3
PROBE_DESIGN/ 4 (0.8%) 3 (0.0%) 0.7
AWT/ 4 (0.8%) 3 (0.0%) 0.7
SL/FAST_ALIGNER/ 1 (0.2%) 2 (0.0%) 2.0
NALIGNER/ 2 (0.4%) 2 (0.0%) 1.0
GDE/CORE/ 1 (0.2%) 2 (0.0%) 2.0
ARBDBPP/ 1 (0.2%) 2 (0.0%) 2.0
SL/FILE_BUFFER/ 1 (0.2%) 1 (0.0%) 1.0
SECEDIT/ 2 (0.4%) 1 (0.0%) 0.5
PROBE_SERVER/PROBE_GROUP_DESIGN/ 3 (0.6%) 1 (0.0%) 0.3
PROBE_SERVER/ 25 (5.0%) 1 (0.0%) 0.0
PARSIMONY/ 2 (0.4%) 1 (0.0%) 0.5
HELP_SOURCE/ 2 (0.4%) 1 (0.0%) 0.5
GDE/PHYLIP/ 1 (0.2%) 1 (0.0%) 1.0
EDIT/ 1 (0.2%) 1 (0.0%) 1.0
CONVERTALN/ 2 (0.4%) 1 (0.0%) 0.5
ALIV3/ 1 (0.2%) 1 (0.0%) 1.0
AISC/ 2 (0.4%) 1 (0.0%) 0.5
util/ 1 (0.2%) 0 (0.0%) 0.0
lib/pixmaps/merge/ 1 (0.2%) 0 (0.0%) 0.0
lib/nas/ 1 (0.2%) 0 (0.0%) 0.0
lib/macros/ 1 (0.2%) 0 (0.0%) 0.0
lib/inputMasks/ 1 (0.2%) 0 (0.0%) 0.0
lib/ 1 (0.2%) 0 (0.0%) 0.0
bin/ 1 (0.2%) 0 (0.0%) 0.0
XML/ 1 (0.2%) 0 (0.0%) 0.0
TEMPLATES/ 1 (0.2%) 0 (0.0%) 0.0
SOURCE_TOOLS/ 2 (0.4%) 0 (0.0%) 0.0
SH/ 1 (0.2%) 0 (0.0%) 0.0
PROBE_WEB/SERVER/ 12 (2.4%) 0 (0.0%) 0.0
PROBE_WEB/CLIENT/ 39 (7.8%) 0 (0.0%) 0.0
PROBE_WEB/ 1 (0.2%) 0 (0.0%) 0.0
PROBE_SET/ 1 (0.2%) 0 (0.0%) 0.0
PROBE_SERVER/WORKER/ 3 (0.6%) 0 (0.0%) 0.0
PROBE_COM/ 1 (0.2%) 0 (0.0%) 0.0
PRIMER_DESIGN/ 1 (0.2%) 0 (0.0%) 0.0
PHYLO/ 1 (0.2%) 0 (0.0%) 0.0
PGT/xslt/ 1 (0.2%) 0 (0.0%) 0.0
PERL2ARB/ 1 (0.2%) 0 (0.0%) 0.0
NAMES_COM/ 1 (0.2%) 0 (0.0%) 0.0
MULTI_PROBE/ 1 (0.2%) 0 (0.0%) 0.0
HELP_SOURCE/genhelp/ 1 (0.2%) 0 (0.0%) 0.0
GDEHELP/ 1 (0.2%) 0 (0.0%) 0.0
GDE/FASTDNAML/ 1 (0.2%) 0 (0.0%) 0.0
DIST/ 1 (0.2%) 0 (0.0%) 0.0
DBSERVER/ 1 (0.2%) 0 (0.0%) 0.0
AWTC/ 1 (0.2%) 0 (0.0%) 0.0
ARB_GDE/ 1 (0.2%) 0 (0.0%) 0.0
AISC_MKPTPS/ 1 (0.2%) 0 (0.0%) 0.0

Activity of baderk

Most Recent Commits

baderk 2011-09-27 16:44 Rev.: 7980

Increased the hardcoded upper limit for number of PT-Server matches to 1024k.

1 lines of code changed in 1 file:

  • PROBE: probe.h (+1 -5)
baderk 2011-02-19 15:01 Rev.: 7159

Two fixed memory leaks (using Ralfs !SmartMallocPtr smart pointer).

23 lines of code changed in 3 files:

  • ARBDB: adtcp.cxx (+4 -5)
  • PROBE: PT_io.cxx (+17 -15), PT_main.cxx (+2 -3)
baderk 2011-02-18 18:51 Rev.: 7158

Various fixes to free most of the memory when terminating / having built a PT-Server.
Removes lots of warnings from valgrind...

(This is a backport from CaSSiS.)

98 lines of code changed in 7 files:

  • PROBE: Makefile (+1), PT_main.cxx (+48 -1), PT_prefixtree.cxx (+37 -1), probe.h (-1), probe_tree.hxx (+5 -1), pt_prototypes.h (+3)
  • SERVERCNTRL: servercntrl.cxx (+4 -4)
baderk 2011-02-16 12:32 Rev.: 7143

Fixed two memory leaks in the pt-server.

7 lines of code changed in 2 files:

  • PROBE: PT_buildtree.cxx (+2), PT_prefixtree.cxx (+5 -4)
baderk 2011-02-05 14:58 Rev.: 7127

Added gcc v4.4.5 to the Makefile.

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
baderk 2010-01-04 10:30 Rev.: 6323

gcc v4.4.1 patches.

5 lines of code changed in 5 files:

  • ARBDB: ad_config.cxx (+1 -1), aditem.cxx (+1 -1), adlink.cxx (+1 -1), adstring.cxx (+1 -1), adtables.cxx (+1 -1)
baderk 2009-12-18 16:11 Rev.: 6310

Small fix for gcc 4.4.1

1 lines of code changed in 1 file:

  • AISC: aisc.c (+1 -1)
baderk 2009-12-01 17:52 Rev.: 6290

Added gcc version 4.3.4

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
baderk 2009-11-30 13:15 Rev.: 6285

Karmic Koala (gcc 4.4.1) patch.

12 lines of code changed in 11 files:

  • Makefile (+1)
  • AWT: AWT_db_browser.cxx (+1 -1), AWT_file_selection.cxx (+1 -1)
  • AWTI: AWTI_import.cxx (+1 -1)
  • HELP_SOURCE: arb_help2xml.cxx (+1 -1)
  • NTREE: NT_edconf.cxx (+1 -1)
  • PROBE_DESIGN: SaiProbeVisualization.cxx (+1 -1), probe_design.cxx (+1 -1)
  • SL/FAST_ALIGNER: ClustalV.cxx (+2 -2)
  • SL/FILE_BUFFER: FileBuffer.cxx (+1)
  • TOOLS: arb_gene_probe.cxx (+1 -1)
baderk 2009-06-03 17:33 Rev.: 6003

Fixed ambiguous button functionalities.
Removed file selection dialog from quick-save functionality.
Removed unnecessary whitespaces.

19 lines of code changed in 1 file:

  • MERGE: MG_main.cxx (+19 -39)
baderk 2009-06-03 13:56 Rev.: 5998

Upper limit check (sequence length) in the editor. Removed unneeded whitespaces.

9 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+9 -7)
baderk 2009-06-03 11:17 Rev.: 5995

Fixed popdown params.

1 lines of code changed in 1 file:

  • RNA3D: RNA3D_Interface.cxx (+1 -1)
baderk 2009-05-29 11:59 Rev.: 5960

Additional check when deleting a database field from a species entry. (Ticket #123)
A container field cannot be removed before all its children have been removed as well.

13 lines of code changed in 1 file:

  • SL/DB_SCANNER: db_scanner.cxx (+13 -9)
baderk 2009-05-28 17:48 Rev.: 5956

Logfile permissions set to rw-rw-rw (needed for multi-user environments).

3 lines of code changed in 1 file:

  • ARBDB: adtcp.c (+3 -2)
baderk 2009-05-28 16:25 Rev.: 5955

Added missing include 'algorithm'.

2 lines of code changed in 1 file:

  • WINDOW: AW_debug.cxx (+2 -1)
baderk 2009-05-26 11:17 Rev.: 5941

Fix for a segfault (a 'free' fails) during pt-server creation process.

5 lines of code changed in 1 file:

  • PROBE: PT_io.cxx (+5 -6)
baderk 2009-05-15 17:31 Rev.: 5912

Added gcc 4.3.3 to the list of supported GNU compiler collections.

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
baderk 2009-03-31 15:16 Rev.: 5781

Fixed symlink creation

0 lines of code changed in 1 file:

  • SOURCE_TOOLS: generate_all_links.sh (-3)
baderk 2009-03-31 14:52 Rev.: 5780

code cleanup

1 lines of code changed in 90 files:

  • Makefile (+1 -7)
  • PROBE_SERVER: .cvsignore (del), Makefile (del), ToDo (del), ToDo.txt (del), client_update.sh (del), common.h (del), getFiletime.pl (del), global_defs.h (del), kill_all_servers.sh (del), log_memuse.sh (del), mapping.h (del), memusage.txt (del), path_code.h (del), probe_parameters.conf (del), read_config.h (del), restart_all_servers.sh (del), server_databases_rebuild.sh (del), server_databases_recalc.sh (del), server_watch_cronjob.sh (del), show_running_servers.sh (del), start_all_servers.sh (del), treeformat.README (del), update_probe_server.sh (del), update_probe_server_databases.sh (del)
  • PROBE_SERVER/PROBE_GROUP: Makefile (del), pg_db.cxx (del), pg_db.hxx (del), pg_def.hxx (del), pg_main.cxx (del), pg_search.cxx (del), pg_search.hxx (del)
  • PROBE_SERVER/PROBE_GROUP_DESIGN: Makefile (del), pgd_main.cxx (del)
  • PROBE_SERVER/TREE_MERGE: Makefile (del), tree_merge.cxx (del)
  • PROBE_SERVER/WORKER: Makefile (del), README (del), psw_main.cxx (del)
  • PROBE_WEB: Makefile (del)
  • PROBE_WEB/CLIENT: .cvsignore (del), .depends (del), AutofoldCandidate.java (del), Client.java (del), ClientException.java (del), CommandLine.java (del), DialogDriver.java (del), DialogWrapper.java (del), DisplayMouseAdapter.java (del), GroupCache.java (del), HttpSubsystem.java (del), IOManager.java (del), LineArea.java (del), LineAreaFactory.java (del), Makefile (del), MessageDialog.java (del), NodeError.java (del), NodeProbes.java (del), Probe.java (del), ProbeLibrary.manifest (del), ProbeList.java (del), ProbeListActionListener.java (del), ProbeMenu.java (del), ProbeToolbar.java (del), ProbesGUI.java (del), ProbesGUIActionListener.java (del), ServerAnswer.java (del), ToDo (del), ToDo.txt (del), Toolkit.java (del), TreeDisplay.java (del), TreeNode.java (del), TreeParser.java (del), TreeReader.java (del), TreeToolbar.java (del), WindowClosingAdapter.java (del), demo.newick (del), mymanifest (del)
  • PROBE_WEB/SERVER: .cvsignore (del), arb_probe_library.jar (del), arb_probe_server.config.template (del), getMembers.cgi (del), getProbes.cgi (del), getStatus.cgi (del), getTree.cgi (del), getTreeBinary.cgi (del), getTreeVersion.cgi (del), getVersion.cgi (del), probe_server.pm (del), test_getProbes.cgi (del)
baderk 2009-03-18 11:17 Rev.: 5769

Added missing dependency (stl algorithm) and removed some unnecessary whitespaces.

7 lines of code changed in 1 file:

  • GENOM_IMPORT: DBwriter.cxx (+7 -6)

(115 more)

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