January 2003 Commit Log

Number of Commits:

60

Number of Active Developers:

4

meierh 2003-01-31 20:01 #60 Rev.: 1077

7 embl-genoms are still not imported

2 lines of code changed in 1 file:

• AWTI: AWTI_import.cxx (+2 -1)

westram 2003-01-24 19:14 #59 Rev.: 1076

fixes for DEVELOPER

73 lines of code changed in 1 file:

• Makefile (+73 -19)

westram 2003-01-24 19:13 #58 Rev.: 1075

* config.makefile.template: added DEVELOPER

6 lines of code changed in 1 file:

• config.makefile.template (+6 -2)

westram 2003-01-24 19:08 #57 Rev.: 1074

removed 'SEQUENCECOLUMN 0' (did nothing)

3 lines of code changed in 13 files:

• lib/import: dewachter.ift (-1), dnasis.ift (-1), ebi_2002_wl.ift (+1 -2), ebi_2002_wl_test_variables.ift (-1), ebi_netscape.ift (+1 -2), ebi_old.ift (-1), fasta.ift (-1), gcg-rsf.ift (-1), gde_flat.ift (-1), licor_sequencer.ift (-1), licor_wl.ift (-1), licor_wl_new.ift (-1), pir.ift (+1 -2)

westram 2003-01-24 19:07 #56 Rev.: 1073

filters were dangerous (simply skipping all infront of column 10)
now it just removes spaces and digits

10 lines of code changed in 3 files:

• lib/import: genbank.ift (+4 -3), genbank_multi.ift (+4 -3), rdp.ift (+2 -1)

westram 2003-01-24 18:53 #55 Rev.: 1072

* NT_extern.cxx: - added ARB_init_global_awars() to create_all_awars()

10 lines of code changed in 1 file:

• NTREE: NT_extern.cxx (+10 -8)

westram 2003-01-24 18:53 #54 Rev.: 1071

* PH_main.cxx: - added ARB_init_global_awars

25 lines of code changed in 1 file:

• DIST: PH_main.cxx (+25 -23)

westram 2003-01-24 18:52 #53 Rev.: 1070

added help

31 lines of code changed in 1 file:

• lib/pictures: submiss.fig (+31 -23)

westram 2003-01-24 18:52 #52 Rev.: 1069

added browse button

1 lines of code changed in 1 file:

• lib/pictures: help.fig (+1)

westram 2003-01-24 18:51 #51 Rev.: 1068

*** empty log message ***

254 lines of code changed in 4 files:

• WINDOW: Makefile (+26 -26), aw_awars.hxx (+17 -17), aw_nawar.hxx (+11 -11), aw_window.hxx (+200 -200)

westram 2003-01-24 18:51 #50 Rev.: 1067

* AW_status.cxx: - added browse button to help window

45 lines of code changed in 1 file:

• WINDOW: AW_status.cxx (+45 -11)

westram 2003-01-24 18:51 #49 Rev.: 1066

* AW_window.cxx: - removed menu dumping

1 lines of code changed in 1 file:

• WINDOW: AW_window.cxx (+1 -1)

westram 2003-01-24 18:50 #48 Rev.: 1065

* aw_root.hxx: - added AW_awar::make_global() and ARB_init_global_awars()
- added ARB_global_awars_initialized()

126 lines of code changed in 1 file:

• WINDOW: aw_root.hxx (+126 -119)

westram 2003-01-24 18:50 #47 Rev.: 1064

* aw_global_awars.hxx: - defines the names of the global awars

24 lines of code changed in 1 file:

• WINDOW: aw_global_awars.hxx (new 24)

westram 2003-01-24 18:50 #46 Rev.: 1063

* AW_global_awars.cxx: - implementation of AW_awar::make_global() and ARB_init_global_awars()

107 lines of code changed in 1 file:

• WINDOW: AW_global_awars.cxx (new 107)

westram 2003-01-24 18:48 #45 Rev.: 1062

* generate_all_links.sh: - added aw_global_awars.hxx

8 lines of code changed in 1 file:

• SOURCE_TOOLS: generate_all_links.sh (+8 -7)

westram 2003-01-24 18:48 #44 Rev.: 1061

removed error limit

1 lines of code changed in 1 file:

• SOURCE_TOOLS: arb_valgrind (+1 -1)

westram 2003-01-24 18:47 #43 Rev.: 1060

* PH_main.cxx: - added ARB_init_global_awars()

63 lines of code changed in 1 file:

• PHYLO: PH_main.cxx (+63 -59)

westram 2003-01-24 18:47 #42 Rev.: 1059

* PARS_main.cxx: - added ARB_init_global_awars() to create_all_awars()

2 lines of code changed in 1 file:

• PARSIMONY: PARS_main.cxx (+2)

westram 2003-01-24 18:46 #41 Rev.: 1058

*** empty log message ***

1374 lines of code changed in 10 files:

• ARBDB: ad_prot.h (+2), ad_save_load.c (+150 -148), adlocal.h (+243 -232)
• AWTI: AWTI_import.cxx (+351 -352), awti_imp_local.hxx (+32 -32)
• EDIT4: ed4_class.hxx (+548 -546)
• HELP_SOURCE/oldhelp: help.hlp (+6 -2), input_mask_format.hlp (+5), props_www.hlp (+8 -2), submission.hlp (+29 -5)

westram 2003-01-24 18:44 #40 Rev.: 1057

* ED4_main.cxx: - added ARB_init_global_awars() to ED4_create_all_awars()

35 lines of code changed in 1 file:

• EDIT4: ED4_main.cxx (+35 -31)

westram 2003-01-24 18:44 #39 Rev.: 1056

* edit.cxx: - added ARB_init_global_awars

950 lines of code changed in 1 file:

• EDIT: edit.cxx (+950 -947)

westram 2003-01-24 18:42 #38 Rev.: 1055

* AWTC_submission.cxx: added help

243 lines of code changed in 1 file:

• AWTC: AWTC_submission.cxx (+243 -224)

westram 2003-01-24 18:41 #37 Rev.: 1054

* AWT_www.cxx: - reorganized URL functions
- AWAR_WWW_BROWSER is global now

52 lines of code changed in 1 file:

• AWT: AWT_www.cxx (+52 -29)

westram 2003-01-24 18:41 #36 Rev.: 1053

* awt_www.hxx: - added awt_openURL (which opens any URL)
- renamed awt_openURL to awt_openDefaultURL_on_species

2 lines of code changed in 1 file:

• AWT: awt_www.hxx (+2 -1)

westram 2003-01-24 18:39 #35 Rev.: 1052

* adstring.c: - added GBS_fconvert_string (used to read ASCII ARB DB)

88 lines of code changed in 1 file:

• ARBDB: adstring.c (+88 -18)

westram 2003-01-24 18:39 #34 Rev.: 1051

* ad_load.c: - gb_read_file uses GBS_fconvert_string (handles all escapes properly)

62 lines of code changed in 1 file:

• ARBDB: ad_load.c (+62 -50)

westram 2003-01-24 18:39 #33 Rev.: 1050

* adsocket.c: - added GB_getenvHTMLDOCPATH()

11 lines of code changed in 1 file:

• ARBDB: adsocket.c (+11)

westram 2003-01-24 18:39 #32 Rev.: 1049

* adcompr.c: - removed DEBUG prints

2 lines of code changed in 1 file:

• ARBDB: adcompr.c (+2 -2)

yadhu 2003-01-24 15:19 #31 Rev.: 1048

Bitmaps for the search button

0 lines of code changed in 1 file:

• lib/pixmaps: search.bitmap (new)

yadhu 2003-01-24 15:19 #30 Rev.: 1047

Bitmaps to increase/decrease the screen area

18 lines of code changed in 2 files:

• lib/pixmaps: less.bitmap (new 9), more.bitmap (new 9)

yadhu 2003-01-24 14:51 #29 Rev.: 1046

*** empty log message ***

2211 lines of code changed in 22 files:

• AWT: AWT_query_and_functions.cxx (+923 -923), AWT_seq_colors.cxx (+1 -1)
• EDIT4: ED4_terminal.cxx (+114 -114), ED4_window.cxx (+245 -245)
• NTREE: NT_concatenate.cxx (+324 -289), NT_extern.cxx (+57 -13), ad_spec.cxx (+61 -61), ad_spec.hxx (+1), ntree.hxx (+1 -1)
• PARSIMONY: PARS_dtree.cxx (+4 -4)
• SOURCE_TOOLS: prep_old_arb_versions (+3 -3)
• WINDOW: AW_button.cxx (+138 -138), AW_preset.cxx (+47 -50), AW_window.cxx (+122 -122), aw_awars.hxx (+1), aw_window_Xm.hxx (+150 -150)
• lib/import: genbank.ift (+1 -1), genbank_multi.ift (+1 -1)
• lib/pixmaps: pjump.bitmap (+6 -7), redo.bitmap (+3 -3), undo.bitmap (+3 -3), www.bitmap (+5 -4)

yadhu 2003-01-24 14:50 #28 Rev.: 1045

Separate Color and fonts can be selected for displaying Helix numbers in the secondary editor window.

221 lines of code changed in 3 files:

• SECEDIT: SEC_graphic.cxx (+20 -19), SEC_paint.cxx (+137 -137), sec_graphic.hxx (+64 -64)

richter 2003-01-23 15:56 #27 Rev.: 1044

gb_fix_database enabled again

1 lines of code changed in 1 file:

• NTREE: NT_extern.cxx (+1 -1)

richter 2003-01-23 15:49 #26 Rev.: 1043

latest version of valid names added

132 lines of code changed in 4 files:

• ARBDB: adtools.c (+1)
• NTREE: NT_extern.cxx (+1 -2), NT_validNameParser.cxx (+3 -2), NT_validNames.cxx (+127 -63)

westram 2003-01-21 18:08 #25 Rev.: 1042

hot-fix for pt-server

1 lines of code changed in 1 file:

• PROBE_DESIGN: probe_design.cxx (+1 -1)

westram 2003-01-21 18:05 #24 Rev.: 1041

old color names

22 lines of code changed in 2 files:

• AWT: AWT_dtree.cxx (+12 -11)
• EDIT4: ED4_root.cxx (+10 -9)

westram 2003-01-21 17:51 #23 Rev.: 1040

*** empty log message ***

0 lines of code changed in 2 files:

• ARBDB: adTest.c (-2)
• TOOLS: arb_2_bin.cxx (-2)

westram 2003-01-21 17:43 #22 Rev.: 1039

*** empty log message ***

4 lines of code changed in 1 file:

• NTREE: NT_extern.cxx (+4)

meierh 2003-01-21 15:04 #21 Rev.: 1038

ralfs_test in debug version only

2 lines of code changed in 1 file:

• TOOLS: arb_2_bin.cxx (+2)

westram 2003-01-21 12:48 #20 Rev.: 1037

*** empty log message ***

1 lines of code changed in 1 file:

• WINDOW: AW_window.cxx (+1 -1)

westram 2003-01-17 21:48 #19 Rev.: 1036

helps to compile old ARB versions

37 lines of code changed in 1 file:

• SOURCE_TOOLS: prep_old_arb_versions (new 37)

westram 2003-01-17 11:10 #18 Rev.: 1035

* AW_window.cxx: - added debug code that dumps all created menus+entries

101 lines of code changed in 1 file:

• WINDOW: AW_window.cxx (+101 -18)

westram 2003-01-17 09:20 #17 Rev.: 1034

*** empty log message ***

2414 lines of code changed in 14 files:

• ARBDB: ad_core.c (+48 -48), ad_load.c (+883 -883), ad_prot.h (+4), adindex.c (+286 -286), adlmacros.h (+145 -145), adlundo.h (+27 -27), admalloc.c (+211 -211), admap.h (+5 -5), adregexp.h (+45 -45), adseqcompr.h (+1 -1), adtune.h (+16 -16), arbdb.c (+649 -649), arbdb.h (+77 -77), arbdbt.h (+17 -17)

westram 2003-01-17 09:20 #16 Rev.: 1033

* admap.c: - added replacement macros ftwrite_(un)aligned for ftwrite
(ftwrite did illegal read behind block, if block wasn't aligned)

189 lines of code changed in 1 file:

• ARBDB: admap.c (+189 -154)

westram 2003-01-17 09:19 #15 Rev.: 1032

* adTest.c: - added GB_dump_db_path, GB_get_db_path, GB_get_type_name and GB_fix_database

132 lines of code changed in 1 file:

• ARBDB: adTest.c (+132 -69)

westram 2003-01-17 09:18 #14 Rev.: 1031

* NT_extern.cxx: - added new menu entry 'Fix database'

26 lines of code changed in 1 file:

• NTREE: NT_extern.cxx (+26 -38)

westram 2003-01-16 20:03 #13 Rev.: 1030

fixed errors and commented warnings

45 lines of code changed in 2 files:

• NTREE: NT_validNameParser.cxx (+21 -18), NT_validNames.cxx (+24 -24)

meierh 2003-01-16 17:51 #12 Rev.: 1029

harald_version

1 lines of code changed in 1 file:

• AWT: AWT_species_sel_box.cxx (+1 -1)

richter 2003-01-16 17:43 #11 Rev.: 1028

valid names prototype

711 lines of code changed in 4 files:

• NTREE: NT_validNameParser.cxx (new 304), NT_validNames.cxx (new 319), nt_validNameParser.hxx (new 87), nt_validNames.hxx (new 1)

richter 2003-01-16 17:22 #10 Rev.: 1027

*** empty log message ***

44 lines of code changed in 1 file:

• NTREE: Makefile (+44 -27)

richter 2003-01-16 17:10 #9 Rev.: 1026

valid names prototype

43 lines of code changed in 1 file:

• NTREE: NT_extern.cxx (+43 -1)

westram 2003-01-15 20:15 #8 Rev.: 1025

*** empty log message ***

3 lines of code changed in 1 file:

• lib/nas: Makefile (+3 -3)

westram 2003-01-15 20:13 #7 Rev.: 1024

changes owner of names.dat (needed if other user used nameserver on trance)

4 lines of code changed in 1 file:

• lib/nas: Makefile (+4)

westram 2003-01-15 19:56 #6 Rev.: 1023

*** empty log message ***

1 lines of code changed in 1 file:

• WINDOW: AW_window.cxx (+1 -1)

westram 2003-01-09 16:24 #5 Rev.: 1022

*** empty log message ***

57 lines of code changed in 2 files:

• HELP_SOURCE/oldhelp: nt_keys.hlp (new 56)
• lib: arb_tcp.dat (+1)

westram 2003-01-08 14:31 #4 Rev.: 1021

valgrinds

32 lines of code changed in 8 files:

• AWT: AWT_csp.cxx (+6 -6), AWT_filter.cxx (+5 -5), AWT_sel_boxes.cxx (+1 -1), AWT_tree.cxx (+1 -1), BI_helix.cxx (+3 -3)
• STAT: ST_ml.cxx (+5 -5), ST_quality.cxx (+7 -7), ST_window.cxx (+4 -4)

westram 2003-01-08 14:20 #3 Rev.: 1020

*** empty log message ***

1 lines of code changed in 1 file:

• WINDOW: AW_device.cxx (+1 -1)

yadhu 2003-01-08 13:42 #2 Rev.: 1019

Changes in color display dialogs.

9 lines of code changed in 1 file:

• WINDOW: AW_preset.cxx (+9 -7)

westram 2003-01-08 10:22 #1 Rev.: 1018

*** empty log message ***

749 lines of code changed in 8 files:

• arb_CHANGES.txt (+1 -1)
• ARBDB: adstring.c (+265 -265)
• AWT: AWT_config_manager.cxx (+42 -36), AWT_dtree.cxx (+105 -59), awt_dtree.hxx (+2 -1)
• NTREE: NT_edconf.cxx (+143 -143), NT_extern.cxx (+2 -2), ad_ext.cxx (+189 -189)

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