November 2004 Commit Log

Number of Commits:
63
Number of Active Developers:
3
westram 2004-11-26 13:33 Rev.: 3411

- missing tick

3 lines of code changed in 1 file:

westram 2004-11-18 20:32 Rev.: 3410

- C fix

14 lines of code changed in 1 file:

westram 2004-11-18 20:19 Rev.: 3409

- added 'Refresh fields' to 'Species Information/Fields'

9 lines of code changed in 1 file:

westram 2004-11-18 20:18 Rev.: 3408

- database is scanned for and cleaned from empty gene_data containers
- added class CheckedConsistencies (helper class to perform one-time-tasks like the above one)

89 lines of code changed in 1 file:

westram 2004-11-18 20:17 Rev.: 3407

- added 'Refresh fields' to 'Experiment Information/Fields'

9 lines of code changed in 1 file:

westram 2004-11-18 20:17 Rev.: 3406

- uses new gene_data access functions
- added 'Refresh fields' to 'Gene Information/Fields'

11 lines of code changed in 1 file:

westram 2004-11-18 20:16 Rev.: 3405

- uses new gene_data access functions

1 lines of code changed in 1 file:

westram 2004-11-18 20:16 Rev.: 3404

- splitted GEN_get_gene_data into GEN_find_gene_data, GEN_findOrCreate_gene_data and GEN_expect_gene_data

4 lines of code changed in 1 file:

westram 2004-11-18 20:15 Rev.: 3403

- splitted GEN_get_gene_data into GEN_find_gene_data, GEN_findOrCreate_gene_data and GEN_expect_gene_data
- uses new gene_data access functions
- GEN_find_gene returns 0 when no gene found
- GEN_..pseudo_species-functions assert argument is a pseudo_species

27 lines of code changed in 1 file:

westram 2004-11-18 15:17 Rev.: 3402

- gcc 3.3.4 tested (reported by A.Tille)

1 lines of code changed in 1 file:

westram 2004-11-18 15:17 Rev.: 3401

- rsh -> ssh (untested!)

14 lines of code changed in 5 files:

westram 2004-11-18 14:07 Rev.: 3400

- depends updated

41 lines of code changed in 8 files:

westram 2004-11-18 14:06 Rev.: 3399

- status display for sequence export (ARB method)

7 lines of code changed in 1 file:

westram 2004-11-18 14:05 Rev.: 3398

- added TEMPLATES/perf_timer.h

1 lines of code changed in 1 file:

westram 2004-11-18 14:04 Rev.: 3397

- uses PerfTimer

16 lines of code changed in 1 file:

westram 2004-11-18 14:04 Rev.: 3396

- simple class for performance measuring

80 lines of code changed in 1 file:

artemov 2004-11-18 13:01 Rev.: 3395

Reduced import duration to approx. 50%

14 lines of code changed in 1 file:

artemov 2004-11-18 12:58 Rev.: 3394

Ralf: basic performance debug messages

16 lines of code changed in 1 file:

artemov 2004-11-17 17:08 Rev.: 3393

*** empty log message ***

6 lines of code changed in 1 file:

westram 2004-11-12 20:49 Rev.: 3392

- gcc 2.95.3 fix

1 lines of code changed in 1 file:

westram 2004-11-12 20:46 Rev.: 3391

- fixed a bug in name-map-generation (caused by looooooooong gene-names)
- intergenic regions are detected globally (ascending gene order was assumed before)

215 lines of code changed in 1 file:

westram 2004-11-12 20:45 Rev.: 3390

- 'intron' -> 'intergene'
- some words about results of gene-pt-server

6 lines of code changed in 1 file:

westram 2004-11-12 20:31 Rev.: 3389

- raised wrong error

1 lines of code changed in 1 file:

westram 2004-11-12 20:30 Rev.: 3388

*** empty log message ***

32 lines of code changed in 1 file:

westram 2004-11-12 12:23 Rev.: 3387

- forgot one 'gp'

1 lines of code changed in 1 file:

westram 2004-11-12 12:12 Rev.: 3386

- beautified
- fixed 2 asserts

79 lines of code changed in 1 file:

westram 2004-11-12 12:12 Rev.: 3385

- moved GENE_PROBE/GP_main.cxx here

482 lines of code changed in 1 file:

westram 2004-11-12 12:11 Rev.: 3384

- added arb_gene_probe

1 lines of code changed in 1 file:

westram 2004-11-12 12:11 Rev.: 3383

- removed call to GENE_PROBE subdir

0 lines of code changed in 1 file:

westram 2004-11-11 13:01 Rev.: 3382

- C fix

10 lines of code changed in 1 file:

westram 2004-11-11 12:52 Rev.: 3381

- added AWTI_ImportType (differs between old and new flatfile importer)

7 lines of code changed in 1 file:

westram 2004-11-11 12:52 Rev.: 3380

- added AWAR_ALI_PROTECTION

6 lines of code changed in 1 file:

westram 2004-11-11 12:52 Rev.: 3379

- added ali protection selector -> sets default protection for new sequence data
- fixed 'flatfile/non-flatfile' toggle usage
- stores/restores ali name+type, when toggling between flatfile and normal seq.file

75 lines of code changed in 1 file:

westram 2004-11-11 12:51 Rev.: 3378

- uses GENOM_ALIGNMENT instead of 'ali_genom'
- gbt_insert_character shows status
- fixed tree error message

14 lines of code changed in 1 file:

westram 2004-11-11 12:50 Rev.: 3377

- added AWAR_GENE_COMPLEMENT

4 lines of code changed in 1 file:

westram 2004-11-11 12:50 Rev.: 3376

- uses GENOM_ALIGNMENT instead of 'ali_genom'
- fixed partly hidden text
- check genome length when creating genes manually
- init AWAR_GENE_COMPLEMENT, use it in gene_create_cb
- added a 'Complentary strand'-toggle to gene create window

51 lines of code changed in 1 file:

westram 2004-11-11 12:49 Rev.: 3375

- moved GENOM_ALIGNMENT -> adGene.h

0 lines of code changed in 1 file:

westram 2004-11-11 12:48 Rev.: 3374

- added GENOM_ALIGNMENT (has been in GEN.hxx)

4 lines of code changed in 1 file:

westram 2004-11-11 12:47 Rev.: 3373

- GEN_create_gene_rel_gene_data() raises error if no name specified

6 lines of code changed in 1 file:

westram 2004-11-11 12:47 Rev.: 3372

- senseless cast removed

1 lines of code changed in 1 file:

westram 2004-11-11 12:47 Rev.: 3371

- AWT_graphic_tree::load avoids error message when no tree is selected

30 lines of code changed in 1 file:

westram 2004-11-11 12:46 Rev.: 3370

- fixed wildcard usage

4 lines of code changed in 1 file:

westram 2004-11-11 12:45 Rev.: 3369

- added protection selector

29 lines of code changed in 1 file:

westram 2004-11-11 12:44 Rev.: 3368

- added toggle (for complement)

11 lines of code changed in 1 file:

westram 2004-11-11 12:44 Rev.: 3367

- fixed 'flatfile/non-flatfile' toggle usage
- uses GENOM_ALIGNMENT instead of 'ali_genom'

4 lines of code changed in 1 file:

westram 2004-11-11 12:43 Rev.: 3366

- fixed 'flatfile/non-flatfile' toggle usage

6 lines of code changed in 1 file:

westram 2004-11-11 12:43 Rev.: 3365

- uses GENOM_ALIGNMENT instead of 'ali_genom'

3 lines of code changed in 1 file:

westram 2004-11-10 15:29 Rev.: 3364

- added debugging code to file selection boxes
- if dir + previous_filename results in directory name -> clear previous_filename
- parent directory always shown (was hidden when 'Hide subdirs' was active)
- new browser command 'dot' to toggle display of files/directories starting with '.' (default: hide)

51 lines of code changed in 1 file:

artemov 2004-11-10 14:34 Rev.: 3363

*** empty log message ***

6 lines of code changed in 1 file:

westram 2004-11-10 13:45 Rev.: 3362

- added gcc 3.4.3 to tested versions

1 lines of code changed in 1 file:

westram 2004-11-09 15:00 Rev.: 3361

- added *.java

1 lines of code changed in 1 file:

westram 2004-11-09 14:37 Rev.: 3360

- like fasta_noalign.eft, but all data in one line

0 lines of code changed in 1 file:

westram 2004-11-09 14:37 Rev.: 3359

- like fasta.eft, but all data in one line

4 lines of code changed in 1 file:

westram 2004-11-09 14:37 Rev.: 3358

- fasta export filter (removes alignment from sequence)

0 lines of code changed in 1 file:

westram 2004-11-09 14:37 Rev.: 3357

- renamed into fasta_noalign.eft

0 lines of code changed in 1 file:

artemov 2004-11-09 12:20 Rev.: 3356

*** empty log message ***

502 lines of code changed in 13 files:

westram 2004-11-08 21:06 Rev.: 3355

Patch for Debian gcc

1 lines of code changed in 1 file:

artemov 2004-11-08 17:26 Rev.: 3354

*** empty log message ***

91 lines of code changed in 5 files:

artemov 2004-11-05 17:39 Rev.: 3353

*** empty log message ***

204 lines of code changed in 8 files:

meierh 2004-11-05 17:10 Rev.: 3352

test

1 lines of code changed in 1 file:

artemov 2004-11-04 13:50 Rev.: 3351

*** empty log message ***

5 lines of code changed in 1 file:

artemov 2004-11-04 11:14 Rev.: 3350

*** empty log message ***

12 lines of code changed in 1 file:

artemov 2004-11-04 10:59 Rev.: 3349

*** empty log message ***

91 lines of code changed in 5 files:

October 2004 »

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