March 2006 Commit Log

Number of Commits:

11

Number of Active Developers:

2

westram 2006-03-31 15:54 #11 Rev.: 4010

- debug messages
- better error messages if name-map-parsing failes
- rewrote crippled name-map parser

61 lines of code changed in 1 file:

• PROBE: PT_main.cxx (+61 -38)

westram 2006-03-31 15:54 #10 Rev.: 4009

- SEGV when using gene pt server on DB as well containing pseudo-species

8 lines of code changed in 1 file:

• PROBE_DESIGN: probe_design.cxx (+8 -5)

westram 2006-03-31 15:54 #9 Rev.: 4008

- escapes ';' in gene_names of mapping
- error handling for illegal gene positions

37 lines of code changed in 1 file:

• TOOLS: arb_gene_probe.cxx (+37 -11)

westram 2006-03-31 11:59 #8 Rev.: 4007

- debug messages

3 lines of code changed in 1 file:

• PROBE: PT_main.cxx (+3 -1)

westram 2006-03-31 11:59 #7 Rev.: 4006

- not in namespace std: isdigit isalpha

26 lines of code changed in 3 files:

• GENOM_IMPORT: GADDBJ.cpp (+6 -6), GAEmbl.cpp (+13 -13), GAGenBank.cpp (+7 -7)

westram 2006-03-31 11:59 #6 Rev.: 4005

- include cstdio

10 lines of code changed in 2 files:

• GENOM_IMPORT: GAARB.h (+5 -1), GAGenomImport.cpp (+5)

artemov 2006-03-23 11:30 #5 Rev.: 4004

*** empty log message ***

0 lines of code changed in 2 files:

• GENOM_IMPORT: GAParser.cpp (del), GAParser.h (del)

artemov 2006-03-23 11:25 #4 Rev.: 4003

?

0 lines of code changed in 1 file:

• AWTC: Makefile (-1)

artemov 2006-03-23 11:24 #3 Rev.: 4002

Genome Importer Version 2

3041 lines of code changed in 66 files:

• GENOM_IMPORT: GAARB.cpp (new 161), GAARB.h (new 70), GADDBJ.cpp (new 625), GADDBJ.h (new 67), GAEmbl.cpp (new 698), GAEmbl.h (new 68), GAFile.cpp (new 159), GAFile.h (new 119), GAGenBank.cpp (new 628), GAGenBank.h (new 67), GAGenom.cpp (del), GAGenom.h (del), GAGenomDDBJ.cpp (del), GAGenomDDBJ.h (del), GAGenomEmbl.cpp (del), GAGenomEmbl.h (del), GAGenomFeatureTable.cpp (del), GAGenomFeatureTable.h (del), GAGenomFeatureTableDDBJ.cpp (del), GAGenomFeatureTableDDBJ.h (del), GAGenomFeatureTableEmbl.cpp (del), GAGenomFeatureTableEmbl.h (del), GAGenomFeatureTableGenBank.cpp (del), GAGenomFeatureTableGenBank.h (del), GAGenomFeatureTableSource.cpp (del), GAGenomFeatureTableSource.h (del), GAGenomFeatureTableSourceDDBJ.cpp (del), GAGenomFeatureTableSourceDDBJ.h (del), GAGenomFeatureTableSourceEmbl.cpp (del), GAGenomFeatureTableSourceEmbl.h (del), GAGenomFeatureTableSourceGenBank.cpp (del), GAGenomFeatureTableSourceGenBank.h (del), GAGenomGenBank.cpp (del), GAGenomGenBank.h (del), GAGenomGene.cpp (del), GAGenomGene.h (del), GAGenomGeneDDBJ.cpp (del), GAGenomGeneDDBJ.h (del), GAGenomGeneEmbl.cpp (del), GAGenomGeneEmbl.h (del), GAGenomGeneGenBank.cpp (del), GAGenomGeneGenBank.h (del), GAGenomGeneLocation.cpp (del), GAGenomGeneLocation.h (del), GAGenomGeneLocationDDBJ.cpp (del), GAGenomGeneLocationDDBJ.h (del), GAGenomGeneLocationEmbl.cpp (del), GAGenomGeneLocationEmbl.h (del), GAGenomGeneLocationGenBank.cpp (del), GAGenomGeneLocationGenBank.h (del), GAGenomImport.cpp (+55 -1554), GAGenomReference.cpp (del), GAGenomReference.h (del), GAGenomReferenceDDBJ.cpp (del), GAGenomReferenceDDBJ.h (del), GAGenomReferenceEmbl.cpp (del), GAGenomReferenceEmbl.h (del), GAGenomReferenceGenBank.cpp (del), GAGenomReferenceGenBank.h (del), GAGenomUtilities.cpp (del), GAGenomUtilities.h (del), GALogger.cpp (new 66), GALogger.h (new 50), GASourceFileSwitcher.cpp (new 77), GASourceFileSwitcher.h (new 39), Makefile (+92 -214)

artemov 2006-03-22 20:14 #2 Rev.: 4001

Version 1

1768 lines of code changed in 2 files:

• GENOM_IMPORT: GAGenomImport.cpp (+1554 -55), Makefile (+214 -92)

artemov 2006-03-22 19:56 #1 Rev.: 4000

Version 2
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147 lines of code changed in 2 files:

• GENOM_IMPORT: GAGenomImport.cpp (+55 -1554), Makefile (+92 -214)

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