March 2003 Commit Log

Number of Commits:
80
Number of Active Developers:
5
yadhu 2003-03-27 14:46 Rev.: 1281

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35 lines of code changed in 2 files:

westram 2003-03-26 18:45 Rev.: 1280

* oldhelp/csp_2_gnuplot.hlp: - added some info about different calculations

21 lines of code changed in 1 file:

westram 2003-03-26 18:45 Rev.: 1279

* awt_csp.hxx: - untabified and indented

35 lines of code changed in 1 file:

westram 2003-03-26 18:45 Rev.: 1278

* AWT_csp.cxx: - untabified, indented and valgrinded
- if no helix is found -> ignored

28 lines of code changed in 1 file:

westram 2003-03-26 18:44 Rev.: 1277

* AP_csp_2_gnuplot.cxx: - valgrinded, indented and untabified
- rewrote parts of AP_csp_2_gnuplot_cb
- plot shows type of data in gnuplot

202 lines of code changed in 1 file:

yadhu 2003-03-26 15:47 Rev.: 1276

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0 lines of code changed in 1 file:

westram 2003-03-26 15:17 Rev.: 1275

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32 lines of code changed in 2 files:

westram 2003-03-26 15:14 Rev.: 1274

* GDE.cxx: - valgrinded

3 lines of code changed in 1 file:

westram 2003-03-26 15:13 Rev.: 1273

- aw_status_timer_listen_event (initial gauge value set to 0)

5 lines of code changed in 1 file:

westram 2003-03-26 15:12 Rev.: 1272

* ad_ext.cxx: - valgrinded, untabified and indented

50 lines of code changed in 1 file:

westram 2003-03-26 15:12 Rev.: 1271

* AP_pos_var_pars.cxx: - valgrinded

1 lines of code changed in 1 file:

westram 2003-03-26 15:12 Rev.: 1270

* AP_cprofile.cxx: - valgrinded, indented and untabified

1227 lines of code changed in 1 file:

westram 2003-03-26 15:12 Rev.: 1269

* AP_consensus.cxx: - valgrinded
- rewrote CON_calculate_cb (was really weird)

572 lines of code changed in 1 file:

westram 2003-03-26 15:11 Rev.: 1268

* oldhelp/ad_extended.hlp: - added info about 'ASSIGN GROUP'

8 lines of code changed in 1 file:

yadhu 2003-03-26 14:57 Rev.: 1267

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205 lines of code changed in 4 files:

westram 2003-03-26 13:28 Rev.: 1266

* AW_status.cxx: - untabified and indented
- logfile always written in users home

21 lines of code changed in 1 file:

westram 2003-03-25 18:12 Rev.: 1265

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21 lines of code changed in 1 file:

westram 2003-03-25 18:12 Rev.: 1264

added *.cc and *.hh

1 lines of code changed in 1 file:

westram 2003-03-25 18:11 Rev.: 1263

* phylo.hxx: - untabified and indented

74 lines of code changed in 1 file:

westram 2003-03-25 18:11 Rev.: 1262

* PH_matr.cxx: - untabified and indented

101 lines of code changed in 1 file:

westram 2003-03-25 18:11 Rev.: 1261

* ad_transpro.cxx: - valgrinded

7 lines of code changed in 1 file:

westram 2003-03-25 18:11 Rev.: 1260

* NT_extern.cxx: - menu resort
- moved some stuff into debugging menu (for internal use only)

15 lines of code changed in 1 file:

westram 2003-03-25 18:11 Rev.: 1259

* NT_concatenate.cxx: - fixed a display error (close button)

11 lines of code changed in 1 file:

westram 2003-03-25 18:10 Rev.: 1258

* CONSENSUS_TREE/CT_part.cxx: - untabified, indented and valgrinded

140 lines of code changed in 1 file:

westram 2003-03-25 18:10 Rev.: 1257

* CONSENSUS_TREE/CT_mem.cxx: - getmem() returns 0 if memory couldn't be allocated

5 lines of code changed in 1 file:

westram 2003-03-25 18:09 Rev.: 1256

* awt_pro_a_nucs.hxx: - ctors for arb_r2a_pro_2_nuc, arb_r2a_pro_2_nucs and arb_r2a_struct
- untabified and indented

33 lines of code changed in 1 file:

westram 2003-03-25 18:09 Rev.: 1255

* AWT_tree.cxx: - bootstrapping had an serious error causing use of random positions from OUTSIDE
the sequence (i.e. random memory locations)
- valgrinded

* AWT_tree.cxx: - untabified, indented and valgrinded

73 lines of code changed in 1 file:

westram 2003-03-25 18:09 Rev.: 1254

* AWT_seq_dna.cxx: - valgrinded

114 lines of code changed in 1 file:

westram 2003-03-25 18:09 Rev.: 1253

* AWT_pro_a_nucs.cxx: - structs arb_r2a_pro_2_nuc and arb_r2a_pro_2_nucs were allocated by GB_calloc (using new now!)
- ctors for arb_r2a_pro_2_nuc, arb_r2a_pro_2_nucs and arb_r2a_struct

47 lines of code changed in 1 file:

westram 2003-03-25 18:09 Rev.: 1252

* AWT_nei.cxx: - untabified, indented and valgrinded

211 lines of code changed in 1 file:

westram 2003-03-25 18:09 Rev.: 1251

* AWT_dtree.cxx: - hotkeys 'm' and 'c' crashed when zombie in tree

2 lines of code changed in 1 file:

westram 2003-03-25 18:08 Rev.: 1250

* di_matr.hxx: - untabified and indented

50 lines of code changed in 1 file:

westram 2003-03-25 18:08 Rev.: 1249

* DI_matr.cxx: - untabified, indented and valgrinded

126 lines of code changed in 1 file:

westram 2003-03-25 18:08 Rev.: 1248

* DI_compress_matrix.cxx: - valgrinded

70 lines of code changed in 1 file:

westram 2003-03-25 14:30 Rev.: 1247

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17 lines of code changed in 1 file:

westram 2003-03-25 14:23 Rev.: 1246

changed prefix of filename from 'PH_' to 'DI_'
becaused they clashed with files in PHYLO

4055 lines of code changed in 29 files:

foerster 2003-03-19 03:51 Rev.: 1245

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287 lines of code changed in 1 file:

foerster 2003-03-19 03:51 Rev.: 1244

reordered definitions and inserted some comments

12 lines of code changed in 1 file:

foerster 2003-03-19 03:50 Rev.: 1243

new function PS_Node::removeProbes()

5 lines of code changed in 1 file:

foerster 2003-03-17 23:30 Rev.: 1242

fixed bug with allocating memory when calling PS_BitMap_Counted(PS_FileBuffer *)

177 lines of code changed in 2 files:

meierh 2003-03-17 18:28 Rev.: 1241

exception handling; writing import messages and errors to file arb.log

39 lines of code changed in 2 files:

westram 2003-03-14 20:19 Rev.: 1240

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0 lines of code changed in 1 file:

westram 2003-03-14 20:13 Rev.: 1239

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33 lines of code changed in 2 files:

westram 2003-03-14 20:00 Rev.: 1238

avoid compilation with other compiler than gcc 2.95.3 (Linux only)

33 lines of code changed in 1 file:

westram 2003-03-14 19:59 Rev.: 1237

* NT_extern.cxx: - re-arranged menus according to fogs requests

80 lines of code changed in 1 file:

westram 2003-03-14 19:56 Rev.: 1236

* ED4_root.cxx: - renamed NDS menu entry (according to arb_ntree)

1 lines of code changed in 1 file:

foerster 2003-03-14 17:53 Rev.: 1235

new function PS_apply_candidate_to_bitmap() -- currently produces a seg.fault at the deletion of __MAP when used

97 lines of code changed in 1 file:

foerster 2003-03-14 17:51 Rev.: 1234

moved unction flush() from private to public area

1 lines of code changed in 1 file:

foerster 2003-03-14 17:50 Rev.: 1233

new function PS_BitMap(_Counted)::printGNUplot(..)

86 lines of code changed in 1 file:

foerster 2003-03-14 17:49 Rev.: 1232

spell correction in comment

1 lines of code changed in 1 file:

foerster 2003-03-14 17:49 Rev.: 1231

bug fixed in getSpeciesCount()

1 lines of code changed in 1 file:

yadhu 2003-03-14 17:40 Rev.: 1230

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126 lines of code changed in 2 files:

foerster 2003-03-14 12:22 Rev.: 1229

new functions:
PS_calc_next_speciesid_sets()
PS_find_probes(..)
PS_find_probe_for_sets(..)
PS_print_set_ranges(..)

260 lines of code changed in 1 file:

foerster 2003-03-14 12:20 Rev.: 1228

testing of new functions PS_Bit(Map|Set)::get(True|False)Indices(...)

35 lines of code changed in 1 file:

foerster 2003-03-14 12:19 Rev.: 1227

new function PS_Bit(Map|Set)::get(True|False)Indices(...)
fixed bug in functions setting a bit to false in PS_BitSet

166 lines of code changed in 2 files:

foerster 2003-03-14 12:18 Rev.: 1226

new function PS_Database::getSpeciesCount()

3 lines of code changed in 1 file:

foerster 2003-03-14 12:16 Rev.: 1225

fixed bug in lines for ps_find

3 lines of code changed in 1 file:

westram 2003-03-13 20:59 Rev.: 1224

made more clear, that user has to do some config

70 lines of code changed in 1 file:

westram 2003-03-12 17:27 Rev.: 1223

install script fixes

4 lines of code changed in 1 file:

foerster 2003-03-12 01:58 Rev.: 1222

introduction of 4th step : ps_find_probes.cxx

87 lines of code changed in 1 file:

foerster 2003-03-12 01:56 Rev.: 1221

introduction of 4th step : ps_find_probes.cxx
resorted Makefile a bit

73 lines of code changed in 1 file:

foerster 2003-03-12 01:12 Rev.: 1220

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3 lines of code changed in 2 files:

richter 2003-03-11 15:42 Rev.: 1219

seleciton list for valid names continued

63 lines of code changed in 2 files:

foerster 2003-03-10 18:02 Rev.: 1218

changed name of member variable size to max_index/max_row to reflect its actual meaning

154 lines of code changed in 2 files:

foerster 2003-03-10 18:01 Rev.: 1217

introduction of db_min_id because not every database has the SpeciesID 0 (zero) assigned to a species

4 lines of code changed in 1 file:

foerster 2003-03-10 17:59 Rev.: 1216

fixed bug handling next_path_id in PS_print_and_evaluate()

21 lines of code changed in 1 file:

richter 2003-03-10 14:48 Rev.: 1215

manual name selection file added

176 lines of code changed in 6 files:

foerster 2003-03-09 04:04 Rev.: 1214

modified output behavior due to introduction of ps_show_results

57 lines of code changed in 6 files:

foerster 2003-03-09 04:02 Rev.: 1213

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63 lines of code changed in 1 file:

foerster 2003-03-08 20:18 Rev.: 1212

minor changes in handling program parameters
minor changes in output behavior

84 lines of code changed in 3 files:

yadhu 2003-03-06 13:59 Rev.: 1211

Color transalation table window

35 lines of code changed in 1 file:

yadhu 2003-03-06 13:58 Rev.: 1210

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220 lines of code changed in 7 files:

foerster 2003-03-05 20:27 Rev.: 1209

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21 lines of code changed in 8 files:

westram 2003-03-05 19:39 Rev.: 1208

fixes for arb_probe_group_design

12 lines of code changed in 1 file:

foerster 2003-03-05 19:22 Rev.: 1207

milestone 1 -- converting / merging / detecting works

1480 lines of code changed in 11 files:

foerster 2003-03-05 19:21 Rev.: 1206

interface to database files in my format
bundles mapping and tree

351 lines of code changed in 2 files:

foerster 2003-03-05 19:20 Rev.: 1205

renamed from ps_dumb_db.cxx

326 lines of code changed in 1 file:

foerster 2003-03-05 19:19 Rev.: 1204

renamed to ps_convert_db.cxx

0 lines of code changed in 1 file:

foerster 2003-03-05 19:18 Rev.: 1203

test programs

277 lines of code changed in 3 files:

foerster 2003-03-05 19:17 Rev.: 1202

moved logic to PS_Database

0 lines of code changed in 1 file:

February 2003 »

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