October 2015 Commit Log

Number of Commits:
29
Number of Active Developers:
1
westram 2015-10-30 18:12 Rev.: 14448


* remove impossible TODOs
* use DOWNCAST for expected dynamic type

2 lines of code changed in 1 file:

westram 2015-10-30 17:56 Rev.: 14447


* type callbacks in DB_SCANNER

13 lines of code changed in 1 file:

westram 2015-10-30 17:44 Rev.: 14446


* dont create species w/o name

18 lines of code changed in 1 file:

westram 2015-10-30 17:22 Rev.: 14445


* fix callback handling in genemap
- revert first attempt to fix ([14436])
- bind callbacks to '''correct''' {{{gene_data}}} if genemap is attached to an organism (was always bound to globally "selected organism")
- test whether organism still exists before removing callbacks (if not -> just forget callbacks)
- fixes
* crash at exit (as fixed by [14436])
* various crashes occurring while attaching, deleting and unattaching organisms from views

70 lines of code changed in 6 files:

westram 2015-10-30 17:20 Rev.: 14444


* clear unhandled error while extracting genes to a non-existing alignment

5 lines of code changed in 1 file:

westram 2015-10-30 13:45 Rev.: 14443


* use named gc windows for SECEDIT and RNA3D
- ids interfered with EDIT4 gc window

10 lines of code changed in 2 files:

westram 2015-10-30 13:07 Rev.: 14442


* fix genemap gc window
- id clashed with NTREE gc window. fixed by using named gc window
- created multiple gc windows for multiple genemaps

8 lines of code changed in 1 file:

westram 2015-10-30 12:36 Rev.: 14441


* use typed callbacks for {{{GEN_map_window}}}-callbacks

17 lines of code changed in 1 file:

westram 2015-10-30 11:51 Rev.: 14440


* use typed awar callbacks in GENOM

19 lines of code changed in 1 file:

westram 2015-10-30 11:35 Rev.: 14439


* use enum instead of int

22 lines of code changed in 1 file:

westram 2015-10-30 11:20 Rev.: 14438


* use typed window callbacks in GENOM

84 lines of code changed in 3 files:

westram 2015-10-29 18:33 Rev.: 14436


* ~~after using genemap, closing arb failed assertion (tried to delete callback from already deleted DB entry)~~
- ~~avoids failure by mapping all genemap windows to "no organism" directly before AWAR/DB cleanup~~
(reverted by [14445])

19 lines of code changed in 3 files:

westram 2015-10-28 20:12 Rev.: 14435


* fix macro ids for GDE items (broken by [14433])

32 lines of code changed in 4 files:

westram 2015-10-28 19:12 Rev.: 14434


* use typed callbacks in AWTI, PRIMER_DESIGN, SEQ_QUALITY and REFENTRIES

42 lines of code changed in 4 files:

westram 2015-10-28 18:37 Rev.: 14433


* use typed callbacks in ARB_GDE

21 lines of code changed in 3 files:

westram 2015-10-28 18:01 Rev.: 14432


* use typed callbacks in NTREE

117 lines of code changed in 17 files:

westram 2015-10-28 16:29 Rev.: 14430


* use typed callbacks in FAST_ALIGNER

16 lines of code changed in 3 files:

westram 2015-10-28 16:23 Rev.: 14429


* use typed callbacks in RNA3D

10 lines of code changed in 1 file:

westram 2015-10-28 16:07 Rev.: 14428


* use typed callbacks in SECEDIT

36 lines of code changed in 2 files:

westram 2015-10-28 15:15 Rev.: 14427


* use typed awar callbacks in EDIT4

60 lines of code changed in 9 files:

westram 2015-10-28 14:39 Rev.: 14426


* use typed window callbacks in EDIT4

186 lines of code changed in 20 files:

westram 2015-10-28 11:58 Rev.: 14425


* reintegrates 'consensus' into 'trunk'
- fixes #663 (consistent consensus calculation)
- allow to load SAI into existing EDIT4 config
- tweaked "View differences"
- minor fixes for SAI MAX_FREQUENCY
* adds:
- log:branches/addtest@14319:14326
- log:branches/consensus@14276:14424

2731 lines of code changed in 54 files:

westram 2015-10-22 14:07 Rev.: 14420


- fix OCCURRENCEs

2 lines of code changed in 2 files:

westram 2015-10-11 14:54 Rev.: 14414


* something gets modified in jenkins builds
- try to detect what

5 lines of code changed in 1 file:

westram 2015-10-10 15:08 Rev.: 14412


* fix branch-detection

2 lines of code changed in 1 file:

westram 2015-10-10 14:28 Rev.: 14411


* fix svn-access URLs
[Note: test-commit to new server from svn+ssh WC]

2 lines of code changed in 2 files:

westram 2015-10-10 14:08 Rev.: 14410


* fix outdated links to arb-help

2 lines of code changed in 2 files:

westram 2015-10-10 13:27 Rev.: 14409


* fix links to ~~dev.mikro.biologie.tu-muenchen.de/debian~~

3 lines of code changed in 2 files:

westram 2015-10-10 13:10 Rev.: 14408


* remove some dead mail-addresses
[Note: test commit from DAV-WC to new server]

4 lines of code changed in 4 files:

September 2015 »

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