June 2014 Commit Log

Number of Commits:
48
Number of Active Developers:
2
westram 2014-06-19 18:55 Rev.: 12478


* use gcc features:
- use -Og instead of -O0 (gcc4.8++)
- enable {{{-Wunused-local-typedefs}}} for gcc4.8++ (disable for RNACMA and nostd.cxx)

18 lines of code changed in 3 files:

westram 2014-06-19 18:33 Rev.: 12477


- publish some tests (disappeared with gcc4.8.0 and -Og)

4 lines of code changed in 4 files:

westram 2014-06-19 15:54 Rev.: 12476


* force stabs debug format when i'm compiling with gcc 4.8 or higher
- tests failed since [12436]

6 lines of code changed in 1 file:

westram 2014-06-17 16:41 Rev.: 12460


* reduce diffs between gtk/motif
- backport [12375]
- use ifdef ARB_GTK

13 lines of code changed in 1 file:

westram 2014-06-17 12:59 Rev.: 12459


* fix #567
- during macro playback raise a playback-flag in {{{gb_server_data}}} (while performing action-callback or awar-change)
- accept '''one''' client in {{{GB_resort_data_base}}}, if that playback-flag is set
* misbehavior described in #567 caused an error, but did not show it
- return error from KeySorter::save_changes
- fix typo in error message

56 lines of code changed in 5 files:

westram 2014-06-14 19:54 Rev.: 12457


* reintegrates 'fix' into 'trunk'
- fixes
* hotfix [12443], by fixing scope of GDE_startaction_cb's locals
* GBT_get_alignment...
* GDE_export (when nothing to export)
- kicks 3k to void
* adds:
- log:branches/fix@12445:12456

96 lines of code changed in 13 files:

westram 2014-06-14 11:39 Rev.: 12443


* hotfix #564
- do not check filter validity if no sequences are exported

1 lines of code changed in 1 file:

westram 2014-06-13 17:53 Rev.: 12442


- remove rest of non-unix LFs (trailing \r's)

2 lines of code changed in 2 files:

westram 2014-06-13 17:42 Rev.: 12441


- fix failing NDEBUG tests

3 lines of code changed in 1 file:

westram 2014-06-13 17:00 Rev.: 12439


* let jenkins check for missing locations in all builds

1 lines of code changed in 1 file:

westram 2014-06-13 16:55 Rev.: 12438


* activate errors on missing test-source location
- publish all missing tests
- missing location apparently only occurs
* in dynamic libraries and
* for last test of a module
Note: the reverse is not true!

26 lines of code changed in 24 files:

westram 2014-06-13 16:39 Rev.: 12437


* merge unittest-fixes from 'alilink' into 'trunk'
* adds:
- log:branches/alilink@12430,12433:12436

74 lines of code changed in 6 files:

westram 2014-06-12 17:41 Rev.: 12429


* jenkins seems to disable projects when repo-url vanishes
- dropped a note for me (to remember enabling it again for arb6.1rc1)

5 lines of code changed in 2 files:

westram 2014-06-12 15:20 Rev.: 12427


- doc where variable expansion happens (checked code and help)
- more specific error source (APPEND/WRITE)

13 lines of code changed in 2 files:

westram 2014-06-12 13:43 Rev.: 12426


- use release url (is same directory - so it doesn't really matter)

1 lines of code changed in 1 file:

westram 2014-06-12 13:02 Rev.: 12423


* merge [12422] from 'alilink' into 'trunk'

7 lines of code changed in 1 file:

westram 2014-06-11 16:33 Rev.: 12417


* mark uses of select-callbacks (see #559)

5 lines of code changed in 4 files:

westram 2014-06-11 16:11 Rev.: 12416


* remove callback triggered by clicking into search-window-result-list
* reintroduce functionality by explicit 'Info' button

14 lines of code changed in 2 files:

westram 2014-06-11 15:34 Rev.: 12415


* fix path to mv_if_diff
* exclude tests.slow from srclst

2 lines of code changed in 2 files:

westram 2014-06-11 14:51 Rev.: 12414


* only perform unit tests when test-code, needed library or config has changed
- create .done file for each successful unit
- use separate directories for all/non-slow tests
- define some special dependencies
* for arb_test.o (depends on called command line tools)
* for unit-tests connection to pt_server
* only dump log if tests were skipped and slow tests are performed (shows disabled tests)

106 lines of code changed in 5 files:

epruesse 2014-06-10 19:33 Rev.: 12412

updated the README a bit

153 lines of code changed in 1 file:

westram 2014-06-09 06:16 Rev.: 12411


- CONVERTALN.a was relinked unconditionally (fixed)

10 lines of code changed in 1 file:

westram 2014-06-09 06:13 Rev.: 12410


- revert [11774]:
- dump logs only when tests fail

0 lines of code changed in 1 file:

westram 2014-06-06 17:59 Rev.: 12409


* merge fixes from 'gtk_only' into 'trunk'
* adds:
- log:branches/gtk_only@12406,12408

11 lines of code changed in 2 files:

westram 2014-06-06 15:43 Rev.: 12405


* merge [12404] from 'gtk_only' into 'trunk'

4 lines of code changed in 2 files:

westram 2014-06-06 14:57 Rev.: 12401


- assert MG_alignment_vars_callback does not exported errors (in fact it does in gtk)

4 lines of code changed in 1 file:

westram 2014-06-06 14:15 Rev.: 12400


* fix a race condition in main target 'help'
{{{
make HELP_SOURCE/HELP_SOURCE.clean ; make help
}}}
failed.

9 lines of code changed in 2 files:

westram 2014-06-05 19:03 Rev.: 12398


* GBS_read_arb_tcp()
- handle exported errors at callers
- changed error message to 'No such entry'
- related to [12396]

124 lines of code changed in 8 files:

westram 2014-06-05 18:14 Rev.: 12396


* do not export error from
- arb_look_and_start_server()
- NameServerConnection::connect()
* instead of popping up an error, display nameserver status in admin window
* will fix #526 in gtk

33 lines of code changed in 4 files:

westram 2014-06-05 17:29 Rev.: 12395


- do not dump color codes into logfiles by default (undoes [12389])

30 lines of code changed in 1 file:

westram 2014-06-05 17:28 Rev.: 12394


revert [12390]. Failed to parse summary from logs and therefore assumed crash:
{{{
- CONSENSUS_TREE (no summary; crashed?)
- arb_proto_2_xsub (no summary; crashed?)
- PARSIMONY (no summary; crashed?)
- libAWT (no summary; crashed?)
- libCORE (no summary; crashed?)
- INSDEL (no summary; crashed?)
}}}
=> all unit test logs dumped unconditionally (should only dump on error)

1 lines of code changed in 1 file:

westram 2014-06-05 17:22 Rev.: 12393


- depends for [12391]

2 lines of code changed in 1 file:

epruesse 2014-06-04 16:43 Rev.: 12391

add unit test for UNDO bug #496

215 lines of code changed in 1 file:

epruesse 2014-06-04 16:12 Rev.: 12390

~~fix unit test summary~~

(reverted by [12394])

1 lines of code changed in 1 file:

epruesse 2014-06-04 16:02 Rev.: 12389

add some color to the messages (want to see failed tests more easily)

20 lines of code changed in 1 file:

westram 2014-06-04 14:00 Rev.: 12387


* loosen month comparison when may is involved in date
* fixes failing 'svn up' + 'make all' w/o 'make clean' (failing if last compilation was done in May)

31 lines of code changed in 2 files:

westram 2014-06-04 12:54 Rev.: 12385


* instantly set most recent window context when creating new window (will fix #525 in gtk)

2 lines of code changed in 1 file:

westram 2014-06-04 12:25


* more readable compile switches (ARB_GTK/ARB_MOTIF)

13 lines of code changed in 8 files:

westram 2014-06-04 12:05 Rev.: 12380


* define ARB_MOTIF in trunk
* expect either ARB_MOTIF or ARB_GTK to be defined (to allow {{{#ifdef ARB_MOTIF}}} instead of {{{#ifndef ARB_GTK}}})

12 lines of code changed in 2 files:

westram 2014-06-04 11:50 Rev.: 12379


- merge gtk-diffs (using ifdefs)

16 lines of code changed in 1 file:

epruesse 2014-06-03 15:56 Rev.: 12373

add missing update_toggle_field call
(motif doesn't seem do need this, GTK creates the field here)

1 lines of code changed in 1 file:

westram 2014-06-03 14:32 Rev.: 12371


* fix #553 (double free in hit description)
- also fixed a duplicate of crashing code

3 lines of code changed in 1 file:

westram 2014-06-03 13:46 Rev.: 12370


* NT_resort_... cannot be used from macros
- mark them as "unrecordable"

5 lines of code changed in 2 files:

westram 2014-06-03 13:06 Rev.: 12368


* pass display AND value to init_from_array
- fixes unwanted change of default entry display string

23 lines of code changed in 4 files:

westram 2014-06-02 19:01 Rev.: 12364


* move default-entries of selection lists to beginning in aw_string_selection() and update_colorset_selection_list()
- these were the only list i found where it makes some kind of sense to have a default selection not @ bottom
- has no/will not have any effect in motif version

2 lines of code changed in 2 files:

westram 2014-06-02 18:17 Rev.: 12361


* unittest: add a new sellist (with default as 1st element)

33 lines of code changed in 1 file:

westram 2014-06-02 15:37 Rev.: 12358


* AW_awar read access is const (effective)

12 lines of code changed in 2 files:

westram 2014-06-02 14:15 Rev.: 12354


* fix false-positive Noncopyable-warnings. Occur in gtk-branch:
{{{
AW_area_management.cxx:49: warning: 'class AW_area_management::Pimpl' has pointer data members (and is neither derived from Noncopyable nor defines copy-ctor and op=)
aw_root_pimpl.hxx:21: warning: 'struct AW_root::pimpl' has pointer data members (and is neither derived from Noncopyable nor defines copy-ctor and op=)
}}}

2 lines of code changed in 1 file:

May 2014 »

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