October 2021 Commit Log

Number of Commits:
19
Number of Active Developers:
1
westram 2021-10-30 19:03 Rev.: 18821


* ignore SIGPIPE while ArbDBWriter exists
- arb does no longer terminate, but instead prints error, when pipe breaks, e.g.:
{{{
19:01.38 While writing '/home/user/data/test with space.arb~': Broken pipe
(close reports: pipe writing to
file='/home/user/data/test with space.arb~'
using cmd='xz > /home/user/data/test with space.arb~'
failed with exitcode=1 (broken pipe? corrupted archive?)
(res=256, exited=1, signaled=0, status=1))
}}}

11 lines of code changed in 3 files:

westram 2021-10-30 17:19 Rev.: 18820


* avoid crash while saving arb database (see #840)
- mark loc where SIGPIPE occurred.
- report an error when compression is enabled and filename contains unwanted characters.

7 lines of code changed in 2 files:

westram 2021-10-25 14:26 Rev.: 18812


* fix assertion failure when (re-)mapping DB_KEYVIEWER.
- assertion was introduced by [18756]

1 lines of code changed in 1 file:

westram 2021-10-12 15:20 Rev.: 18789


* DEBUG and NDEBUG version of helpfiles:
- have to differ '''only''' in ''content'', not in ''line count''.
- now two lines differ
- fixes unittest for NDEBUG version
* fix whitespace.

6 lines of code changed in 3 files:

westram 2021-10-10 09:33 Rev.: 18781


* reintegrates 'help' into 'trunk'
- relocate help sources
* adds: log:branches/help@18763:18780

142 lines of code changed in 467 files:

westram 2021-10-08 16:16 Rev.: 18762


* update documentation:
- reference most important SAI information from main SAI doc.
- add backlinks.

38 lines of code changed in 7 files:

westram 2021-10-08 16:14 Rev.: 18761


* update documentation:
- link between accessibilty SAIs and SAI visualizers.
- shorten help titles (did not differ in first 38 characters (=part which is visible in help SUBTOPICS).
- uncapitalize + correct menu names etc.
- link from SAI visualizers to Probetools and editors.

46 lines of code changed in 5 files:

westram 2021-10-08 16:07 Rev.: 18760


* change layout of 'Color Translation Table' properties window (make space for HELP button).
* add help button (fixes #326)
* change documentation of 'Define Color Translations'.

32 lines of code changed in 4 files:

westram 2021-10-07 19:41 Rev.: 18756


* add {{{DbScanner::remap_item}}}
- callback to remap scanner item.
- remaps selected item using {{{ItemSelector}}} (Note: may fail if non-standard AWAR used for item; e.g used in merge-tool)
- use it as {{{set_popup_callback}}} for window displaying {{{DbScanner}}}
* {{{DbScanner::Map}}} now accepts missing key-path (if scanner is no DB_KEYVIEWER).
* fixes bug in SAI manager:
* fields of selected SAI were not shown when SAI selection changed while SAI manager was closed.
* user needed to change selected SAI to work-around problem

11 lines of code changed in 2 files:

westram 2021-10-07 19:28 Rev.: 18755


* add run_popup_callbacks().
- call from {{{AW_window::show()}}}, if window was hidden before.
* repairs {{{set_popup_callback()}}}, which had no effect since [2]

13 lines of code changed in 2 files:

westram 2021-10-07 19:18 Rev.: 18754


* define {{{ItemSelector}}} for SAIs (lacks changekey functionality, i.e. does not fit into a search&query).
* mark places where species-selector is misused for SAIs.

134 lines of code changed in 5 files:

westram 2021-10-06 10:46 Rev.: 18753


* list some useful character classes.
* show usage in double-brackets.
* {{{[:word:]}}} is not known in arb -> removed.

12 lines of code changed in 1 file:

westram 2021-10-06 10:43 Rev.: 18752


* eliminate obsolete {{{GBT_read_name}}} from perl interface
- To fix your skript you have to replace {{{BIO::read_name}}} by
* {{{BIO::get_name}}} or
* {{{BIO::get_name_or_description}}} (=1:1 replacement).

2 lines of code changed in 2 files:

westram 2021-10-04 18:23 Rev.: 18751


* also rename overloaded {{{GB_path_in_ARBHOME()}}} -> {{{GB_concat_path_in_ARBHOME()}}}.
- Note: before, simply removing the static modifier did break the perl interface.

11 lines of code changed in 2 files:

westram 2021-10-04 17:58 Rev.: 18750


* fix unwanted export of overloaded functions to perl interface:
- GBT_log_to_tree_remark()
- GB_path_in_ARBLIB()

16 lines of code changed in 10 files:

westram 2021-10-04 17:54 Rev.: 18749


* bail out when overloaded functions are exported into perl interface.
- fails build with
{{{
Error: ambiguous function definition for 'GBT_log_to_tree_remark' (overloaded method exported to perl?)
Makefile.main:153: recipe for target 'perl-interface-function-list.txt' failed
}}}
- fixed by [18750]

1 lines of code changed in 1 file:

westram 2021-10-04 17:51 Rev.: 18748


* explicitely define function prefixes.
* link to interface generator code (and vv).
* bail out on ambiguous function suffix.

19 lines of code changed in 2 files:

westram 2021-10-02 13:13 Rev.: 18747


* gitignore file generated since [18746]

1 lines of code changed in 1 file:

westram 2021-10-01 18:07 Rev.: 18746


* adds a script which generates a list of perl interface functions
- call during arb build
* update DOC.txt
- mention that list
- very basic description of interface
- describe the ancient information which already has been in this document.

784 lines of code changed in 5 files:

September 2021 »

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