November 2002 Commit Log

Number of Commits:
74
Number of Active Developers:
2
westram 2002-11-28 19:01 Rev.: 997

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10 lines of code changed in 4 files:

westram 2002-11-28 01:47 Rev.: 996

valgrinded

317 lines of code changed in 35 files:

westram 2002-11-28 01:46 Rev.: 995

best fit button

49 lines of code changed in 1 file:

westram 2002-11-28 01:46 Rev.: 994

* SEC_main.cxx: - renamed "what's this?" back to "?"

15 lines of code changed in 1 file:

westram 2002-11-28 01:45 Rev.: 993

* AWT_canio.cxx: - 'Best fit' for printing

188 lines of code changed in 1 file:

westram 2002-11-27 19:33 Rev.: 992

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197 lines of code changed in 3 files:

yadhu 2002-11-22 13:06 Rev.: 991

modifications to concatenate tool

17 lines of code changed in 1 file:

westram 2002-11-21 19:29 Rev.: 990

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4 lines of code changed in 1 file:

westram 2002-11-21 19:21 Rev.: 989

memory bugfixes

488 lines of code changed in 28 files:

yadhu 2002-11-21 17:18 Rev.: 988

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47 lines of code changed in 3 files:

yadhu 2002-11-21 12:57 Rev.: 987

A tool to Concatenate existing sequences/alignments and to merge the fields of similar species is added.

836 lines of code changed in 2 files:

yadhu 2002-11-21 12:55 Rev.: 986

xfig files to use in Concatenation and merging similar species functions

182 lines of code changed in 12 files:

yadhu 2002-11-21 12:49 Rev.: 985

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234 lines of code changed in 8 files:

westram 2002-11-15 19:52 Rev.: 984

assertion

1 lines of code changed in 4 files:

westram 2002-11-15 19:52 Rev.: 983

* ARB/MULTI_PROBE/MP_probe_combi_statistic.cxx: - crashed if creating 1 probes

1 lines of code changed in 1 file:

westram 2002-11-15 19:51 Rev.: 982

* ARB/MULTI_PROBE/MP_noclass.cxx: - fixed an deallocation bug for system3_tab (occurred for # of probes == 1)

18 lines of code changed in 1 file:

westram 2002-11-15 19:19 Rev.: 981

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2 lines of code changed in 2 files:

westram 2002-11-15 19:19 Rev.: 980

warning if no species marked

5 lines of code changed in 1 file:

westram 2002-11-15 19:09 Rev.: 979

indentation fixed

1499 lines of code changed in 17 files:

westram 2002-11-15 18:40 Rev.: 978

* AWTI_export.cxx: - bugfix of broken temp names
* AWTI_import.cxx: - bugfix of broken temp names

16 lines of code changed in 2 files:

westram 2002-11-15 18:26 Rev.: 977

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1 lines of code changed in 2 files:

westram 2002-11-15 18:26 Rev.: 976

new commands

9 lines of code changed in 2 files:

westram 2002-11-15 18:25 Rev.: 975

* oldhelp/commands.hlp: - changed behavior of 'sequence'
- new command translate
- sorted groups of commands

79 lines of code changed in 1 file:

westram 2002-11-15 18:23 Rev.: 974

* adlang1.c: - returns empty string instead of 'no sequence' if current species has no data in alignment
- added new command translate()

78 lines of code changed in 1 file:

westram 2002-11-15 18:22 Rev.: 973

indented

113 lines of code changed in 1 file:

westram 2002-11-14 18:52 Rev.: 972

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19 lines of code changed in 2 files:

westram 2002-11-14 18:50 Rev.: 971

added 'rename group'

16 lines of code changed in 2 files:

westram 2002-11-14 15:50 Rev.: 970

rewrote GB_check_hkey (wrong error about length)

61 lines of code changed in 1 file:

westram 2002-11-14 15:50 Rev.: 969

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1 lines of code changed in 1 file:

westram 2002-11-12 20:32 Rev.: 968

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27 lines of code changed in 4 files:

westram 2002-11-12 20:31 Rev.: 967

* oldhelp/multiproberesults.hlp: - backup warning
- color mixing

11 lines of code changed in 2 files:

westram 2002-11-12 20:30 Rev.: 966

* ARB/MULTI_PROBE/MultiProbe.hxx: - new AWAR MP_AWAR_AUTOADVANCE

18 lines of code changed in 1 file:

westram 2002-11-12 20:30 Rev.: 965

* ARB/MULTI_PROBE/MP_noclass.cxx: - forward and backward button for MP_show_probes_in_tree
- if comment contains '#' then convert to '|'
- jump to renamed after changing comment
- auto-advance

42 lines of code changed in 1 file:

westram 2002-11-12 20:30 Rev.: 964

* ARB/MULTI_PROBE/MP_main.cxx: - new AWAR MP_AWAR_AUTOADVANCE

7 lines of code changed in 1 file:

westram 2002-11-12 20:30 Rev.: 963

* ARB/MULTI_PROBE/MP_externs.hxx: - prototype MP_show_probes_in_tree_move

24 lines of code changed in 1 file:

westram 2002-11-12 20:30 Rev.: 962

* ARB/MULTI_PROBE/MP_Window.cxx: - buttons for MP_show_probes_in_tree_move
- result_probes_list has value_equal_display-flag set
- new toggle for new AWAR MP_AWAR_AUTOADVANCE

134 lines of code changed in 1 file:

westram 2002-11-12 20:30 Rev.: 961

* aw_window.hxx: - new flag value_equal_display to use different load/save behavior
- prototype for move_selection

25 lines of code changed in 1 file:

westram 2002-11-12 20:30 Rev.: 960

* AW_window.cxx: - initialize value_equal_display

7 lines of code changed in 1 file:

westram 2002-11-12 20:29 Rev.: 959

* AW_button.cxx: - changed format how selection lists are saved
- save_selection_list saves without transform of # to , if value_equal_display is true
- load_selection_list corrects (after confirm) wrong saved old selection_lists
- added AW_window::move_selection (to move the cursor in a selection)

142 lines of code changed in 1 file:

yadhu 2002-11-12 17:20 Rev.: 958

two functions to use with selection lists are added

2 lines of code changed in 1 file:

yadhu 2002-11-12 17:13 Rev.: 957

two functions to use with selection lists are added

36 lines of code changed in 1 file:

westram 2002-11-09 16:39 Rev.: 956

corrected authors

10 lines of code changed in 1 file:

westram 2002-11-09 16:38 Rev.: 955

* xml.hxx: - XML_Tag has new flag onExtraLine to control XML-formatting

6 lines of code changed in 1 file:

westram 2002-11-09 16:38 Rev.: 954

* xml.cxx: - implementation of onExtraLine

11 lines of code changed in 1 file:

westram 2002-11-09 16:37 Rev.: 953

* AW_status.cxx: - sort output of search help

1 lines of code changed in 1 file:

westram 2002-11-09 16:37 Rev.: 952

* arb_2_bin.cxx: - missing flag

1 lines of code changed in 1 file:

westram 2002-11-09 16:37 Rev.: 951

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5 lines of code changed in 2 files:

westram 2002-11-09 16:36 Rev.: 950

* NT_main.cxx: - if argument is a directory then start browser in that directory
- AWAR_DB"directory" updated when AWAR_DB_PATH changes

76 lines of code changed in 1 file:

westram 2002-11-09 16:36 Rev.: 949

* NT_extern.cxx: - new menu for probes/primers
- removed NT_preset_tree_window (unused)
- some other menu changes (probes/reset zoom)
- corrected and rearranged some NT hotkeys

25 lines of code changed in 1 file:

westram 2002-11-09 16:35 Rev.: 948

* awt.hxx: - added AWT_extract_directory

2 lines of code changed in 1 file:

westram 2002-11-09 16:35 Rev.: 947

* AWT_file_selection.cxx: - added AWT_extract_directory

11 lines of code changed in 1 file:

westram 2002-11-09 16:34 Rev.: 946

warning about generated file

7 lines of code changed in 1 file:

westram 2002-11-09 16:34 Rev.: 945

* to_html.xsl: - anchors of sections names containing spaces did not work
- added link to arb-homepage
- help text may contain <LINK>...</LINK>
- LINK also working in preformatted mode

115 lines of code changed in 1 file:

westram 2002-11-09 16:34 Rev.: 944

* to_help.xsl: - help text may contain <LINK>...</LINK>

88 lines of code changed in 1 file:

westram 2002-11-09 16:34 Rev.: 943

* arb_help2xml.cxx: - lines starting with whitespace followed by '#' were misinterpreted as comments
- scans content of sections for LINK{bla.hlp}
- LINK is printed inside text (on same line)

87 lines of code changed in 1 file:

westram 2002-11-09 16:33 Rev.: 942

* Makefile: - flag TEST_ONE

10 lines of code changed in 1 file:

westram 2002-11-09 16:33 Rev.: 941

many changes to helpfiles

790 lines of code changed in 70 files:

westram 2002-11-08 10:34 Rev.: 940

bugfix for gnuplot

5 lines of code changed in 1 file:

westram 2002-11-07 20:08 Rev.: 939

* NT_edconf.cxx: - call to aw_string_selection changed

1 lines of code changed in 1 file:

westram 2002-11-07 20:08 Rev.: 938

* aw_root.hxx: - changed prototype for aw_string_selection

1 lines of code changed in 1 file:

westram 2002-11-07 20:08 Rev.: 937

* AW_status.cxx: - aw_string_selection has new parameter check_fun to add a checking function
- check_fun may return 0

27 lines of code changed in 1 file:

westram 2002-11-07 20:07 Rev.: 936

* AW_nawar.cxx: - check for valid Awar-name when constructing awar

6 lines of code changed in 1 file:

westram 2002-11-07 20:07 Rev.: 935

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19 lines of code changed in 2 files:

westram 2002-11-07 20:06 Rev.: 934

small changes for allocation during edit (used static strings before)

104 lines of code changed in 8 files:

westram 2002-11-07 20:04 Rev.: 933

* ed4_class.hxx: - split ED4_terminal::resolve_pointer_to_string into resolve_pointer_to_string_copy and resolve_pointer_to_char_pntr

8 lines of code changed in 1 file:

westram 2002-11-07 20:04 Rev.: 932

- ANNOUNCE_CHECKSUM_CHANGES and check_bases_and_rebuild_consensi added to ED4_terminal::write_sequence
- bitstring elements now use '.' instead of ' '
- implementation of resolve_pointer_to_char_pntr

74 lines of code changed in 1 file:

westram 2002-11-07 20:03 Rev.: 931

- check_bases_and_rebuild_consensi moved into ED4_terminal::write_sequence

60 lines of code changed in 1 file:

westram 2002-11-07 20:03 Rev.: 930

- ANNOUNCE_CHECKSUM_CHANGES moved into ED4_terminal::write_sequence
- changed how ARB_EDIT4 reads and writes data in edit()

31 lines of code changed in 1 file:

westram 2002-11-07 20:01 Rev.: 929

added GB_strduplen

13 lines of code changed in 2 files:

westram 2002-11-07 19:59 Rev.: 928

* AWT_file_selection.cxx: - removes old suffix if filter changed

13 lines of code changed in 1 file:

westram 2002-11-07 19:59 Rev.: 927

* AWT_config_manager.cxx: - AWT_start_config_manager corrects config name
- now encodes \n and \t

30 lines of code changed in 1 file:

westram 2002-11-07 14:16 Rev.: 926

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0 lines of code changed in 1 file:

westram 2002-11-07 14:15 Rev.: 925

* Makefile: - copy google logo

6 lines of code changed in 1 file:

westram 2002-11-07 14:09 Rev.: 924

* to_html.xsl: - added a google search

37 lines of code changed in 1 file:

October 2002 »

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