/trunk Developers: boehnel

Login name:
boehnel
Total Commits:
276 (0.6%)
Lines of Code:
15,644 (0.6%)
Most Recent Commit:
2009-02-09 16:54
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 276 (100.0%) 15644 (100.0%) 56.6
ptpan/ 98 (35.5%) 14592 (93.3%) 148.8
PROBE/ 26 (9.4%) 325 (2.1%) 12.5
ARBDB/ 43 (15.6%) 181 (1.2%) 4.2
WINDOW/ 10 (3.6%) 132 (0.8%) 13.2
/ 4 (1.4%) 75 (0.5%) 18.7
AWT/ 11 (4.0%) 43 (0.3%) 3.9
READSEQ/ 2 (0.7%) 42 (0.3%) 21.0
ARBDBPP/ 6 (2.2%) 39 (0.2%) 6.5
AISC_COM/C/ 8 (2.9%) 33 (0.2%) 4.1
EDIT4/ 7 (2.5%) 20 (0.1%) 2.8
PROBE_DESIGN/ 2 (0.7%) 18 (0.1%) 9.0
SECEDIT/ 6 (2.2%) 16 (0.1%) 2.6
TOOLS/ 2 (0.7%) 14 (0.1%) 7.0
PROBE_SERVER/PROBE_GROUP_DESIGN/ 1 (0.4%) 11 (0.1%) 11.0
PROBE_SERVER/PROBE_GROUP/ 2 (0.7%) 11 (0.1%) 5.5
NALIGNER/ 1 (0.4%) 9 (0.1%) 9.0
SL/AW_NAME/ 1 (0.4%) 8 (0.1%) 8.0
MULTI_PROBE/ 3 (1.1%) 6 (0.0%) 2.0
ALIV3/ 1 (0.4%) 5 (0.0%) 5.0
TESTVECTORFONT/ 1 (0.4%) 4 (0.0%) 4.0
TESTAWT/ 1 (0.4%) 4 (0.0%) 4.0
PROBE_SERVER/WORKER/ 1 (0.4%) 4 (0.0%) 4.0
ORS_CGI/ 1 (0.4%) 4 (0.0%) 4.0
MERGE/ 1 (0.4%) 4 (0.0%) 4.0
GDE/AxML/ 1 (0.4%) 4 (0.0%) 4.0
AISC_COM/AISC/ 2 (0.7%) 4 (0.0%) 2.0
NTREE/ 1 (0.4%) 3 (0.0%) 3.0
HELP_SOURCE/ 1 (0.4%) 3 (0.0%) 3.0
AWTC/ 2 (0.7%) 3 (0.0%) 1.5
ARB_GDE/ 2 (0.7%) 3 (0.0%) 1.5
SL/HELIX/ 1 (0.4%) 2 (0.0%) 2.0
RNA3D/ 2 (0.7%) 2 (0.0%) 1.0
PHYLO/ 1 (0.4%) 2 (0.0%) 2.0
ORS_SERVER/ 1 (0.4%) 2 (0.0%) 2.0
GL/glpng/ 1 (0.4%) 2 (0.0%) 2.0
GDE/SUPPORT/ 2 (0.7%) 2 (0.0%) 1.0
GDE/CLUSTAL/ 2 (0.7%) 2 (0.0%) 1.0
DIST/ 2 (0.7%) 2 (0.0%) 1.0
TRS/ 1 (0.4%) 1 (0.0%) 1.0
TEST/ 1 (0.4%) 1 (0.0%) 1.0
SEER/ 1 (0.4%) 1 (0.0%) 1.0
PRIMER_DESIGN/ 1 (0.4%) 1 (0.0%) 1.0
PARSIMONY/ 1 (0.4%) 1 (0.0%) 1.0
GENOM/ 1 (0.4%) 1 (0.0%) 1.0
EDIT/ 1 (0.4%) 1 (0.0%) 1.0
AWTI/ 1 (0.4%) 1 (0.0%) 1.0
util/ 5 (1.8%) 0 (0.0%) 0.0
GDE/CORE/ 2 (0.7%) 0 (0.0%) 0.0
CONVERTALN/ 1 (0.4%) 0 (0.0%) 0.0

Activity of boehnel

Most Recent Commits

boehnel 2009-02-09 16:54 Rev.: 5744

* bugfixes for Probe Design
* adding Epsilon for floating point comparision

5 lines of code changed in 1 file:

  • ptpan: PT_new_design.cxx (+5 -6)
boehnel 2009-02-09 14:57 Rev.: 5743

* changed debug output
* fixed indentation

15 lines of code changed in 1 file:

  • ptpan: PT_new_design.cxx (+15 -11)
boehnel 2009-02-02 01:03 Rev.: 5742

* Bugfix to get probe design work

4 lines of code changed in 1 file:

  • ptpan: PT_new_design.cxx (+4 -1)
boehnel 2009-02-02 01:03 Rev.: 5741

* adding GB_init_gb() (needed for PT_new_design)

2 lines of code changed in 1 file:

  • ptpan: PT_main.cxx (+2)
boehnel 2009-02-02 01:01 Rev.: 5740

* make proto (adding PP_buildPosWeight, PP_convertBondMatrix)

2 lines of code changed in 1 file:

  • ptpan: pt_prototypes.h (+2)
boehnel 2009-02-02 01:00 Rev.: 5739

* removing "static" of functions PP_buildPosWeight and PP_convertBondMatrix
* adding debug output
* moving debug output

26 lines of code changed in 1 file:

  • ptpan: PT_match.cxx (+26 -20)
boehnel 2009-02-02 00:55 Rev.: 5738

changing "gb_init_gb" -> "GB_init_gb" to make it global visible (needed for ptpan, new design)

3 lines of code changed in 4 files:

  • ARBDB: ad_load.c (+1 -1), ad_lpro.h (-1), ad_prot.h (+1), arbdb.c (+1 -1)
boehnel 2009-02-02 00:54 Rev.: 5737

Bugfix for 64 bit

1 lines of code changed in 1 file:

  • PROBE: probe_tree.hxx (+1 -1)
boehnel 2009-01-08 05:37 Rev.: 5722

* Fixed indentation

20 lines of code changed in 1 file:

  • ptpan: types.h (+20 -18)
boehnel 2009-01-08 05:30 Rev.: 5721

* adding EPSILON define and change comparison of floats from "a == b" to "fabs(a - b) < EPSILON"

7 lines of code changed in 2 files:

  • ptpan: PT_treepack.cxx (+3 -2), globalprefs.h (+4)
boehnel 2009-01-08 04:46 Rev.: 5720

* Added comment for ALLOWDOTSINMATCH and MAXDOTSINMATCH

5 lines of code changed in 1 file:

  • ptpan: globalprefs.h (+5 -3)
boehnel 2009-01-08 04:35

Bugfixes for ALLOWDOTSINMATCH

82 lines of code changed in 3 files:

  • ptpan: PT_io.cxx (+40 -23), PT_match.cxx (+39 -22), PT_treepack.cxx (+3 -2)
boehnel 2009-01-08 04:35 Rev.: 5717

ULLONG should be unsigned long long

1 lines of code changed in 1 file:

  • ptpan: types.h (+1 -1)
boehnel 2009-01-08 04:34 Rev.: 5716

Bugfixes for ALLOWDOTSINMATCH

2 lines of code changed in 1 file:

  • ptpan: PT_buildtree.cxx (+2 -9)
boehnel 2008-12-28 20:30 Rev.: 5701

* Increasing QUERYHITSHASHSIZE to avoid realloc() (needed for SSUParc'95, cttgtacacaccgcccgt, 5 mismatches)

1 lines of code changed in 1 file:

  • ptpan: globalprefs.h (+1 -1)
boehnel 2008-12-28 17:55 Rev.: 5700

* Removing OpenDataBase() from main to LoadSpecies(). Arbdb access is
* now only needed in LoadSpecies() and since we can't close arbdb, this
* saves us lots of memory when we're not building the tree.

7 lines of code changed in 2 files:

  • ptpan: PT_io.cxx (+7), PT_main.cxx (-7)
boehnel 2008-12-28 17:25 Rev.: 5699

* Removing #ifdef DEVEL_JB and making the code default

17 lines of code changed in 1 file:

  • ptpan: PT_treepack.cxx (+17 -109)
boehnel 2008-12-28 17:04

* removing COMPRESSSEQUENCEWITHDOTSANDHYPHENS #ifdefs and making it default

5 lines of code changed in 6 files:

  • ptpan: PT_buildtree.cxx (-60), PT_io.cxx (+2 -134), PT_match.cxx (-251), PT_treepack.cxx (-11), globalprefs.h (+1 -12), probe.h (+2 -16)
boehnel 2008-12-28 16:11 Rev.: 5694

Bugfix

1 lines of code changed in 1 file:

  • ptpan: PT_io.cxx (+1 -1)
boehnel 2008-12-28 15:38 Rev.: 5693

* changed return type of CompressSequenceWithDotsAndHyphens
* removed use of CacheLoadData when compiling with COMPRESSSEQUENCEWITHDOTSANDHYPHENS to reduce memory usage
* introduced ALLOWDOTSINMATCH


127 lines of code changed in 6 files:

  • ptpan: PT_buildtree.cxx (+27), PT_io.cxx (+59 -26), PT_match.cxx (+14 -3), PT_treepack.cxx (+13), globalprefs.h (+13), pt_prototypes.h (+1 -1)

(105 more)

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