October 2004 Commit Log

Number of Commits:
144
Number of Active Developers:
3
westram 2004-10-29 14:58 Rev.: 3348

- if gene-position is outside gene-sequence (because gene-position is illegal) an error
is raised in GBT_read_gene_sequence

7 lines of code changed in 1 file:

meierh 2004-10-26 09:25 Rev.: 3347

AWT/AWT_codon_table.cxx: kommentare eingef�gt, GENOM_IMPORT/GAGenomImport.cpp: Feldbezeichner/Fehlermeldungen korrigiert

19 lines of code changed in 2 files:

westram 2004-10-22 17:49 Rev.: 3346

added target 'release'

3 lines of code changed in 1 file:

westram 2004-10-22 17:43 Rev.: 3345

- force tree refresh after rename

5 lines of code changed in 1 file:

westram 2004-10-22 17:33 Rev.: 3344

- if species has no fullname => use "No name" as default fullname
- if fullname stored in nameserver is "No name" and now species has a name -> recreate short name
- name server writes exit messages

42 lines of code changed in 1 file:

westram 2004-10-22 17:31 Rev.: 3343

- undo of GB_touch crashed

13 lines of code changed in 1 file:

westram 2004-10-22 17:30 Rev.: 3342

- writes a goodbye message

1 lines of code changed in 1 file:

westram 2004-10-22 14:27 Rev.: 3341

- wrong comment fixed

1 lines of code changed in 1 file:

westram 2004-10-22 14:24 Rev.: 3340

- GEN_species_name_changed_cb() does not crash if species not found

8 lines of code changed in 1 file:

westram 2004-10-22 14:24 Rev.: 3339

- fixed crash introduced by changed set_minmax() behavior

5 lines of code changed in 1 file:

westram 2004-10-22 14:24 Rev.: 3338

- transaction closed earlier in NT_remove_leafs

8 lines of code changed in 1 file:

westram 2004-10-22 14:24 Rev.: 3337

- added code that tests the correct vtable-pointer position (FAKE_VTAB_PTR)
- while deleting tree nodes: when all nodes have been deleted -> delete tree + message

28 lines of code changed in 1 file:

westram 2004-10-22 14:23 Rev.: 3336

- AWT_graphic_tree::update() does nothing if no or empty tree

1 lines of code changed in 1 file:

westram 2004-10-22 14:23 Rev.: 3335

- renamed FAKE_VIRTUAL_TABLE_POINTER -> FAKE_VTAB_PTR

5 lines of code changed in 1 file:

westram 2004-10-22 14:23 Rev.: 3334

- GB_find() asserts that GBDATA has a father

6 lines of code changed in 1 file:

westram 2004-10-22 14:23 Rev.: 3333

- taxonomy() returns 'no default tree' instead of raising an error

25 lines of code changed in 1 file:

westram 2004-10-22 14:23 Rev.: 3332

- define FAKE_VTAB_PTR gcc-version dependent
- removed unsupported compilers (SGI, HP, SUN workshop,..)

20 lines of code changed in 1 file:

westram 2004-10-20 13:48 Rev.: 3331

- added debugging code to gbt_write_tree_nodes()

18 lines of code changed in 1 file:

westram 2004-10-20 13:47 Rev.: 3330

- test code to workaround the error which occurs, when a just-deleted DB-entry is recreated

12 lines of code changed in 1 file:

westram 2004-10-20 13:46 Rev.: 3329

- compilation fix

1 lines of code changed in 1 file:

westram 2004-10-20 13:43 Rev.: 3328

- fixed crash when calling load/save colored from 'color listed ..'

3 lines of code changed in 1 file:

westram 2004-10-20 13:42 Rev.: 3327

- fixed GB_dump() for element w/o father (previously deleted elements)

32 lines of code changed in 1 file:

westram 2004-10-20 13:42 Rev.: 3326

- use gb_get_main_during_cb() to access gb_main

1 lines of code changed in 1 file:

westram 2004-10-15 13:02 Rev.: 3325

- added MBI copyright
- removed tabs

11644 lines of code changed in 54 files:

artemov 2004-10-15 12:51 Rev.: 3324

changed menu entry

5 lines of code changed in 1 file:

westram 2004-10-15 12:38 Rev.: 3323

- unused function commented out

5 lines of code changed in 2 files:

westram 2004-10-15 12:38 Rev.: 3322

- gcc 3.x fix

2 lines of code changed in 1 file:

artemov 2004-10-15 12:38 Rev.: 3321

project completed

4666 lines of code changed in 55 files:

westram 2004-10-12 21:00 Rev.: 3320

- uses <list> instead of <slist> (fix for gcc 3.x)

2 lines of code changed in 1 file:

westram 2004-10-12 20:57 Rev.: 3319

- renamed gen_gene_result_name -> get_get_gene_id (prototype changed)
- added gen_find_gene_by_id()

22 lines of code changed in 1 file:

westram 2004-10-12 20:56 Rev.: 3318

- renamed EXP_experiment_result_name -> EXP_get_experiment_id
- added EXP_find_experiment_by_id

22 lines of code changed in 1 file:

westram 2004-10-12 20:56 Rev.: 3317

- added AWT_get_item_id() + AWT_get_item_with_id()
- added find_item_by_id
- renamed generate_item_name -> generate_item_id

7 lines of code changed in 1 file:

westram 2004-10-12 20:56 Rev.: 3316

- added save/load for colors
- added AWT_get_item_id() + AWT_get_item_with_id()
- fixed call to generate_item_name
- renamed awt_species_result_name -> awt_get_species_id (prototype changed)
- added awt_find_species_by_id()

333 lines of code changed in 1 file:

westram 2004-10-12 20:56 Rev.: 3315

- load/save item colors

22 lines of code changed in 1 file:

westram 2004-10-12 20:56 Rev.: 3314

- added 'load/save'

7 lines of code changed in 1 file:

westram 2004-10-08 16:25 Rev.: 3313

- added *.last_gcc

1 lines of code changed in 1 file:

westram 2004-10-08 16:24 Rev.: 3312

*** empty log message ***

45 lines of code changed in 1 file:

westram 2004-10-08 16:24 Rev.: 3311

- added target check_same_GCC_VERSION (tries to avoid compilation with different gcc versions)

5 lines of code changed in 1 file:

westram 2004-10-08 15:28 Rev.: 3310

- assertion

3 lines of code changed in 1 file:

westram 2004-10-08 15:28 Rev.: 3309

- GB_dump() can handle deleted entries

18 lines of code changed in 1 file:

westram 2004-10-08 15:28 Rev.: 3308

updated

0 lines of code changed in 1 file:

westram 2004-10-08 15:27 Rev.: 3307

- target 'clean' removes $(BUILDLIST)

1 lines of code changed in 1 file:

westram 2004-10-08 15:26 Rev.: 3306

- miniwindows using ad_al_si.fig use create_autosize_button (fixes partly hidden input prompt)

35 lines of code changed in 14 files:

westram 2004-10-08 15:24 Rev.: 3305

- added most changes done since Aug 2003

40 lines of code changed in 1 file:

westram 2004-10-08 15:24 Rev.: 3304

- linking of arbdb and arbdbpp is done via macros (to make exchanging libs more easy)
- cleanup

23 lines of code changed in 1 file:

westram 2004-10-08 15:23 Rev.: 3303

- flush_taxonomy_cb()-removal more tolerant
- increased size of taxonomy-hash
- cached taxonomies store number of named groups

75 lines of code changed in 1 file:

westram 2004-10-08 15:22 Rev.: 3302

- added assertion to GB_create
- fixed a bug in GB_write_byte - it did only write 0 or 1 ('i && 0xff' -> 'i & 0xff')

5 lines of code changed in 1 file:

westram 2004-10-08 15:22 Rev.: 3301

- displays address and security of nodes

11 lines of code changed in 1 file:

westram 2004-10-08 15:22 Rev.: 3300

- 'Reset mode' resets linewidth of clicked node as well

29 lines of code changed in 1 file:

westram 2004-10-08 15:21 Rev.: 3299

- disabled debugging code in PH_tree_write_byte

17 lines of code changed in 1 file:

westram 2004-10-08 15:20 Rev.: 3298

*** empty log message ***

17 lines of code changed in 1 file:

westram 2004-10-08 15:20 Rev.: 3297

- create_autosize_button now handles buttonlabels containing '\n'

20 lines of code changed in 1 file:

westram 2004-10-08 15:19 Rev.: 3296

- AW_awar::set_minmax() calls update to ensure value is inbetween min and max

1 lines of code changed in 1 file:

westram 2004-10-07 15:05 Rev.: 3295

- added gcc 3.2 to list of supported gccs

1 lines of code changed in 1 file:

westram 2004-10-07 15:03 Rev.: 3294

- includes cctype

5 lines of code changed in 1 file:

westram 2004-10-07 14:05 Rev.: 3293

depends updated

1 lines of code changed in 1 file:

westram 2004-10-07 14:04 Rev.: 3292

- fixed "array subscript has type `char'"
- beautified

161 lines of code changed in 1 file:

westram 2004-10-07 14:04 Rev.: 3291

- added std::
- fixed includes

23 lines of code changed in 1 file:

westram 2004-10-07 14:04 Rev.: 3290

- removed round
- added std::

2 lines of code changed in 1 file:

westram 2004-10-07 14:03 Rev.: 3289

- round -> sq_round
- removed duplicated types
- uses namespace std

10 lines of code changed in 1 file:

westram 2004-10-07 14:02 Rev.: 3288

- use std::cout

2 lines of code changed in 1 file:

westram 2004-10-07 14:02 Rev.: 3287

- includes fixed
- added std::

15 lines of code changed in 1 file:

westram 2004-10-07 13:58 Rev.: 3286

- fixed includes
- using namespace std
- uses istringstream

10 lines of code changed in 1 file:

westram 2004-10-07 13:57 Rev.: 3285

- fixed includes
- changed var-decl near gotos

16 lines of code changed in 1 file:

westram 2004-10-07 13:56 Rev.: 3284

- fixed includes
- using namespace std
- SEC_root::write_data uses ostringstream; creates heap-string manually

14 lines of code changed in 1 file:

westram 2004-10-07 13:55 Rev.: 3283

- new module for globally used functions (currently PS_print_time_diff)

97 lines of code changed in 2 files:

westram 2004-10-07 13:55 Rev.: 3282

- removed PS_print_time_diff
- includes fixed

4 lines of code changed in 1 file:

westram 2004-10-07 13:54 Rev.: 3281

- removed PS_print_time_diff
- includes iostream
- fixed includes
- added 'typename' to templates
- cast

35 lines of code changed in 1 file:

westram 2004-10-07 13:52 Rev.: 3280

- fixed includes
- removed PS_print_time_diff

19 lines of code changed in 2 files:

westram 2004-10-07 13:52 Rev.: 3279

- added std::
- fixed include wrappers

24 lines of code changed in 1 file:

westram 2004-10-07 13:51 Rev.: 3278

- renamed 'xor' -> 'x_or'
- removed repeated default parameter for getCountOfTrues

4 lines of code changed in 1 file:

westram 2004-10-07 13:50 Rev.: 3277

- renamed 'xor' -> 'x_or'

4 lines of code changed in 1 file:

westram 2004-10-07 13:50 Rev.: 3276

- removed PS_print_time_diff

3 lines of code changed in 2 files:

westram 2004-10-07 13:49 Rev.: 3275

- CLK_TCK -> CLOCKS_PER_SEC
- includes iostream

5 lines of code changed in 1 file:

westram 2004-10-07 13:48 Rev.: 3274

- added ps_tools.o to shared objects
- depends updated

8 lines of code changed in 1 file:

westram 2004-10-07 13:48 Rev.: 3273

- includes cmath
- cast sqrt()-argument

6 lines of code changed in 1 file:

westram 2004-10-07 13:43 Rev.: 3272

- added std::

6 lines of code changed in 2 files:

westram 2004-10-07 13:43 Rev.: 3271

- added include wrapper (please always add include wrapper into headers)
- conditional inclusion of vector

11 lines of code changed in 1 file:

westram 2004-10-07 13:43 Rev.: 3270

- using namespace std
- fixed "array subscript has type `char'"
- include iostream

14 lines of code changed in 1 file:

westram 2004-10-07 13:41 Rev.: 3269

- changed define for arbdb.h to 'ARBDB_H'
- added+fixed include wrappers
- added std::

23 lines of code changed in 1 file:

westram 2004-10-07 13:40 Rev.: 3268

- trigraph removed

1 lines of code changed in 1 file:

westram 2004-10-07 13:40 Rev.: 3267

- added FORWARD+BACKWARD
- fixed "array subscript has type `char'"

4 lines of code changed in 1 file:

westram 2004-10-07 13:40 Rev.: 3266

- changed define for arbdb.h to 'ARBDB_H'
- fixed "array subscript has type `char'"

2 lines of code changed in 1 file:

westram 2004-10-07 13:39 Rev.: 3265

- include iostream
- uses std::

4 lines of code changed in 1 file:

westram 2004-10-07 13:38 Rev.: 3264

- include iostream
- using namespace std

8 lines of code changed in 2 files:

westram 2004-10-07 13:38 Rev.: 3263

- include iostream/iomanip
- using namespace std

4 lines of code changed in 1 file:

westram 2004-10-07 13:37 Rev.: 3262

- fixed includes
- using namespace std

22 lines of code changed in 3 files:

westram 2004-10-07 13:35 Rev.: 3261

- includes list, string, vector
- uses std::
- fixed ctor

35 lines of code changed in 1 file:

westram 2004-10-07 13:35 Rev.: 3260

- using namespace std
- include iterator

3 lines of code changed in 1 file:

westram 2004-10-07 13:35 Rev.: 3259

- depends updated

1 lines of code changed in 1 file:

westram 2004-10-07 13:34 Rev.: 3258

- made several functions static
- fixed "array subscript has type `char'"
- fixed includes

53 lines of code changed in 1 file:

westram 2004-10-07 13:33 Rev.: 3257

- added memory.h

4 lines of code changed in 1 file:

westram 2004-10-07 13:33 Rev.: 3256

- includes string.h

1 lines of code changed in 1 file:

westram 2004-10-07 13:32 Rev.: 3255

- include iostream

3 lines of code changed in 3 files:

westram 2004-10-07 13:29 Rev.: 3254

- include cassert

2 lines of code changed in 1 file:

westram 2004-10-07 13:29 Rev.: 3253

- include fixes
- removed local version of abs()

3 lines of code changed in 1 file:

westram 2004-10-07 13:28 Rev.: 3252

- include iostream
- fixed "array subscript has type `char'"

5 lines of code changed in 1 file:

westram 2004-10-07 13:28 Rev.: 3251

- includes changed
- using namespace std
- fixed "array subscript has type `char'"

19 lines of code changed in 1 file:

westram 2004-10-07 13:27 Rev.: 3250

- removed local version of fabs
- includes fixed

9 lines of code changed in 1 file:

westram 2004-10-07 13:26 Rev.: 3249

- changed allocation of pointer-array

4 lines of code changed in 4 files:

westram 2004-10-07 13:26 Rev.: 3248

- includes string.h

1 lines of code changed in 1 file:

westram 2004-10-07 13:26 Rev.: 3247

- removed trigraphs

2 lines of code changed in 1 file:

westram 2004-10-07 13:25 Rev.: 3246

- changed arb_r2a_struct::index_2_spro (char->unsigned char)

9 lines of code changed in 1 file:

westram 2004-10-07 13:25 Rev.: 3245

- includes cassert + uses std::string

7 lines of code changed in 1 file:

westram 2004-10-07 13:24 Rev.: 3244

- includes iostream
- fixed "array subscript has type `char'"

5 lines of code changed in 1 file:

westram 2004-10-07 13:24 Rev.: 3243

- changed context where function pointer is assigned

4 lines of code changed in 1 file:

westram 2004-10-07 13:23 Rev.: 3242

- unsigned char fix
- tabs removed

28 lines of code changed in 1 file:

westram 2004-10-07 13:23 Rev.: 3241

- unsigned char fix

1 lines of code changed in 1 file:

westram 2004-10-07 13:20 Rev.: 3240

- includes cmath

4 lines of code changed in 1 file:

westram 2004-10-07 13:19 Rev.: 3239

- removed g_b_error_mixed_quicks (was unused)

0 lines of code changed in 1 file:

westram 2004-10-07 13:19 Rev.: 3238

- includes string.h

3 lines of code changed in 1 file:

westram 2004-10-07 13:18 Rev.: 3237

- renamed wrapper name (NAMES_SERVER_INCLUDED -> AISC_GEN_SERVER_INCLUDED)

5 lines of code changed in 1 file:

westram 2004-10-07 13:18 Rev.: 3236

- get_font_information() takes unsigned char

2 lines of code changed in 2 files:

westram 2004-10-07 13:17 Rev.: 3235

- fixed includes

52 lines of code changed in 6 files:

westram 2004-10-07 13:13 Rev.: 3234

- using namespace std

13 lines of code changed in 6 files:

westram 2004-10-07 13:08 Rev.: 3233

- fixed includes + indentation

956 lines of code changed in 5 files:

westram 2004-10-07 13:08 Rev.: 3232

- signed cast

2 lines of code changed in 2 files:

westram 2004-10-07 13:05 Rev.: 3231

- changed define for arbdb.h to 'ARBDB_H'

13 lines of code changed in 9 files:

westram 2004-10-07 12:49 Rev.: 3230

- fixed "array subscript has type `char'"

235 lines of code changed in 28 files:

westram 2004-10-07 12:37 Rev.: 3229

- moved to arb_README_gcc.txt

0 lines of code changed in 1 file:

westram 2004-10-07 12:36 Rev.: 3228

- generalized instructions for gcc installation

43 lines of code changed in 1 file:

westram 2004-10-07 12:35 Rev.: 3227

- gcc version check updated (can handle several allowed versions)
- added gcc 3.4.2 to tested versions
- fixed a syntax-error
- DEBIAN fix for perl interface

32 lines of code changed in 1 file:

westram 2004-10-07 12:34 Rev.: 3226

- push/pop security in NT_format_all_alignments

5 lines of code changed in 1 file:

westram 2004-10-07 12:33 Rev.: 3225

- inserted target 'linkjar' to make '*.class' expansion work better

3 lines of code changed in 1 file:

westram 2004-10-06 20:29 Rev.: 3224

updated

0 lines of code changed in 1 file:

westram 2004-10-06 20:29 Rev.: 3223

- moved GAGenomImport here
- added GI_importGenomeFile (the only thing visible from outside GENOME_IMPORT)

31 lines of code changed in 1 file:

westram 2004-10-06 20:28 Rev.: 3222

- removed nearly everything - this is meant to be an interface

1 lines of code changed in 1 file:

westram 2004-10-06 20:27 Rev.: 3221

depends updated

1 lines of code changed in 1 file:

westram 2004-10-06 20:27 Rev.: 3220

- changed name of flatfile importer
- using namespace std

10 lines of code changed in 1 file:

westram 2004-10-06 19:01 Rev.: 3219

- includes cstdio

1 lines of code changed in 1 file:

westram 2004-10-06 18:57 Rev.: 3218

- using namespace std

14 lines of code changed in 1 file:

westram 2004-10-06 18:57 Rev.: 3217

- simplified integerToString and stringToInteger

71 lines of code changed in 1 file:

westram 2004-10-06 18:56 Rev.: 3216

- fixed broken '@@'

3 lines of code changed in 1 file:

artemov 2004-10-06 18:21 Rev.: 3215

Neue

1 lines of code changed in 1 file:

artemov 2004-10-06 18:20 Rev.: 3214


neue

4 lines of code changed in 1 file:

artemov 2004-10-06 18:11 Rev.: 3213

re-added

287 lines of code changed in 1 file:

artemov 2004-10-06 17:49 Rev.: 3212

new Version

11959 lines of code changed in 53 files:

artemov 2004-10-06 17:49 Rev.: 3211


gh

0 lines of code changed in 13 files:

artemov 2004-10-06 17:48 Rev.: 3210

Neue Version

0 lines of code changed in 6 files:

artemov 2004-10-06 17:30 Rev.: 3209

*** empty log message ***

222 lines of code changed in 3 files:

artemov 2004-10-05 14:07 Rev.: 3207

GAParser

9 lines of code changed in 1 file:

westram 2004-10-04 17:29 Rev.: 3206

- changed defect comments

9 lines of code changed in 1 file:

westram 2004-10-04 17:28 Rev.: 3205

- put genmenu.header into each *.genmenu

3 lines of code changed in 1 file:

westram 2004-10-04 17:28 Rev.: 3204

- will be put at top of each *.genmenu

5 lines of code changed in 1 file:

September 2004 »

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