Development Statistics for /trunk

Lines of Code

Top 10 Authors

Tag Cloud of Words in Commit Log Messages

about adds alignment allow always assertion avoid awar before branches broken build button call callback change check cleanup code color command comment config create data debug default define delete depend display duplicate empty error export fail field file fixed fixes format function generate global group help include instead interface line link list longer macro made make makefile menu merge message miss mode move name only parameter position print probe prototype reintegrate remove rename replace result return save search selection sequence server several size species target test tree trunk type unit unused update uses using value variable version warn window wrong

Directories

[root] (17 files, 7957 lines)
     AISC (16 files, 3904 lines)
     AISC_COM (1 files, 16 lines)
         AISC (8 files, 2077 lines)
         C (15 files, 2740 lines)
     AISC_MKPTPS (4 files, 1873 lines)
     ALEIO (0 files, 0 lines)
     ALIV3 (0 files, 0 lines)
     ARBDB (85 files, 45938 lines)
         EXAMPLES (0 files, 0 lines)
     ARBDB2 (0 files, 0 lines)
     ARBDBPP (0 files, 0 lines)
     ARBDBS (0 files, 0 lines)
     ARBDB_COMPRESS (0 files, 0 lines)
     ARB_GDE (16 files, 4067 lines)
     AWDEMO (0 files, 0 lines)
     AWT (32 files, 12322 lines)
     AWTC (6 files, 1047 lines)
     AWTI (10 files, 3135 lines)
     BERGEY (0 files, 0 lines)
     BINDEP (37 files, 171 lines)
     BINDINGS (2 files, 267 lines)
         PERL (4 files, 1028 lines)
         PYTHON (4 files, 147 lines)
     BUGEX (1 files, 188 lines)
     CAT (0 files, 0 lines)
     CHIP (0 files, 0 lines)
     CONSENSUS_TREE (16 files, 3495 lines)
     CONVERTALN (36 files, 6594 lines)
     CORE (51 files, 9505 lines)
     DBSERVER (3 files, 563 lines)
     DIST (19 files, 7459 lines)
     DUMMYINC (0 files, 0 lines)
     EDIT (0 files, 0 lines)
     EDIT4 (53 files, 29792 lines)
     EISPACK (7 files, 29478 lines)
     GDE (2 files, 153 lines)
         AxML (5 files, 5978 lines)
         CLUSTAL (13 files, 4953 lines)
         CLUSTALW (33 files, 21375 lines)
         CORE (0 files, 0 lines)
         FASTDNAML (7 files, 6446 lines)
         FASTTREE (3 files, 10353 lines)
         HGL_SRC (0 files, 0 lines)
         LOOPTOOL (0 files, 0 lines)
         MAFFT (1 files, 55 lines)
             mafft-7.053-without-extensions (0 files, 0 lines)
                 core (0 files, 0 lines)
                 scripts (0 files, 0 lines)
             mafft-7.055-with-extensions (4 files, 309 lines)
                 core (90 files, 75652 lines)
                 extensions (3 files, 73 lines)
                     mxscarna_src (21 files, 6918 lines)
                         probconsRNA (20 files, 7594 lines)
                         vienna (6 files, 11842 lines)
         MOLPHY (0 files, 0 lines)
             doc (0 files, 0 lines)
             utl (0 files, 0 lines)
         MUSCLE (2 files, 45 lines)
             src (190 files, 34747 lines)
                 unused (3 files, 548 lines)
         MrBAYES (1 files, 45 lines)
             mrbayes_3.2.1 (31 files, 114641 lines)
         PHYLIP (60 files, 70322 lines)
             doc (42 files, 21478 lines)
         PHYML (22 files, 15006 lines)
         PHYML20130708 (2 files, 64 lines)
             phyml (18 files, 22761 lines)
                 bin (0 files, 0 lines)
                 doc (17 files, 24532 lines)
                 examples (5 files, 1255 lines)
                     lg4x (5 files, 142 lines)
                 src (68 files, 78802 lines)
         PROBCONS (2 files, 31 lines)
             probcons (17 files, 6323 lines)
         RAxML (31 files, 72542 lines)
         RAxML8 (4 files, 588 lines)
         SATIVA (4 files, 397 lines)
             sativa (3 files, 1494 lines)
                 epac (8 files, 2380 lines)
                     ete2 (1 files, 185 lines)
         SINA (1 files, 83 lines)
             builddir (0 files, 0 lines)
                 src (1 files, 1022 lines)
         SUPPORT (10 files, 2522 lines)
         TREEPUZZLE (6 files, 854 lines)
             data (0 files, 0 lines)
             doc (3 files, 1653 lines)
             src (18 files, 17634 lines)
     GDEHELP (11 files, 887 lines)
         DATA_FILES (0 files, 0 lines)
         FASTA (0 files, 0 lines)
             GENBANK (1 files, 1500 lines)
             MATRIX (9 files, 258 lines)
         HELP_PLAIN (3 files, 135 lines)
         HELP_WRITTEN (12 files, 849 lines)
         MENUS (22 files, 2290 lines)
         PHYLIP (0 files, 0 lines)
     GENOM (17 files, 5496 lines)
     GENOM_IMPORT (18 files, 2811 lines)
     GFX (2 files, 1079 lines)
     GL (1 files, 63 lines)
         glAW (10 files, 1498 lines)
         glpng (4 files, 716 lines)
     HEADERLIBS (7 files, 206 lines)
     HELP_SOURCE (16 files, 3821 lines)
         genhelp (6 files, 200 lines)
         oldhelp (0 files, 0 lines)
             prompt (0 files, 0 lines)
             seer (0 files, 0 lines)
         source (25 files, 2099 lines)
     ISLAND_HOPPING (12 files, 2100 lines)
     JAVALIB (0 files, 0 lines)
     MERGE (16 files, 5931 lines)
     MULTI_PROBE (21 files, 6107 lines)
     NALIGNER (26 files, 7914 lines)
     NAMES (4 files, 1536 lines)
     NAMES_COM (8 files, 298 lines)
     NIELS_F77 (0 files, 0 lines)
     NTREE (44 files, 20113 lines)
     ORS_CGI (0 files, 0 lines)
     ORS_COM (0 files, 0 lines)
     ORS_SERVER (0 files, 0 lines)
     PARSIMONY (19 files, 8911 lines)
     PERL2ARB (12 files, 1584 lines)
     PERLTOOLS (3 files, 1085 lines)
     PERL_SCRIPTS (0 files, 0 lines)
         ACI (1 files, 30 lines)
         ARBTOOLS (2 files, 661 lines)
             DOCUMENTED (0 files, 0 lines)
             IFTHELP (4 files, 254 lines)
             TESTS (2 files, 78 lines)
         BIOPERL (2 files, 119 lines)
         GENERAL (1 files, 99 lines)
         GENOME (3 files, 452 lines)
         IFTHELP (0 files, 0 lines)
         MACROS (1 files, 158 lines)
         MAUS (0 files, 0 lines)
         SAI (2 files, 159 lines)
         SPECIES (5 files, 838 lines)
         lib (1 files, 80 lines)
         test (5 files, 212 lines)
     PGT (0 files, 0 lines)
         xslt (0 files, 0 lines)
     PHYLO (11 files, 2179 lines)
     PRIMER_DESIGN (19 files, 2992 lines)
     PROBE (25 files, 10623 lines)
     PROBE_COM (8 files, 447 lines)
     PROBE_DESIGN (11 files, 6662 lines)
     PROBE_SERVER (0 files, 0 lines)
         PROBE_GROUP (0 files, 0 lines)
         PROBE_GROUP_DESIGN (0 files, 0 lines)
         TREE_MERGE (0 files, 0 lines)
         WORKER (0 files, 0 lines)
     PROBE_SET (32 files, 6865 lines)
     PROBE_WEB (0 files, 0 lines)
         CLIENT (0 files, 0 lines)
         SERVER (0 files, 0 lines)
     READSEQ (9 files, 5288 lines)
     RNA3D (20 files, 4657 lines)
         Attic (0 files, 0 lines)
             OPENGL (0 files, 0 lines)
             data (0 files, 0 lines)
             images (0 files, 0 lines)
     RNACMA (8 files, 1584 lines)
     SECEDIT (28 files, 8374 lines)
     SEER (0 files, 0 lines)
     SEQ_QUALITY (12 files, 2285 lines)
     SERVERCNTRL (4 files, 599 lines)
     SH (37 files, 2719 lines)
     SL (2 files, 102 lines)
         ALILINK (7 files, 2367 lines)
         ALIVIEW (4 files, 172 lines)
         AP_TREE (8 files, 2372 lines)
         ARB_TREE (4 files, 565 lines)
         AW_HELIX (4 files, 426 lines)
         AW_NAME (5 files, 1074 lines)
         CB (7 files, 1127 lines)
         CONSENSUS (3 files, 1730 lines)
         DB_QUERY (5 files, 3021 lines)
         DB_SCANNER (4 files, 801 lines)
         DB_UI (5 files, 2065 lines)
         FAST_ALIGNER (8 files, 5861 lines)
         FILE_BUFFER (0 files, 0 lines)
         FILTER (6 files, 901 lines)
         FILTSEQEXP (3 files, 652 lines)
         GROUP_SEARCH (3 files, 4222 lines)
         GUI_ALIVIEW (9 files, 1352 lines)
         HELIX (6 files, 824 lines)
         INSDEL (3 files, 2421 lines)
         ITEMS (10 files, 1735 lines)
         ITEM_SHADER (5 files, 2393 lines)
         LOCATION (4 files, 611 lines)
         MACROS (10 files, 1964 lines)
         MATRIX (4 files, 319 lines)
         NDS (3 files, 1225 lines)
         NEIGHBOURJOIN (5 files, 574 lines)
         PRONUC (8 files, 2764 lines)
         PTCLEAN (4 files, 262 lines)
         PVP (3 files, 565 lines)
         QUERY (3 files, 667 lines)
         REFENTRIES (4 files, 527 lines)
         REGEXPR (4 files, 365 lines)
         ROOTED_TREE (0 files, 0 lines)
         SAICALC (5 files, 3200 lines)
         SEQIO (5 files, 1221 lines)
         SEQUENCE (10 files, 1755 lines)
         TRANSLATE (4 files, 340 lines)
         TREEDISP (10 files, 7583 lines)
         TREE_ADMIN (4 files, 344 lines)
         TREE_READ (5 files, 1221 lines)
         TREE_WRITE (5 files, 616 lines)
         XFERGUI (2 files, 1294 lines)
         XFERSET (3 files, 2152 lines)
     SOURCE_TOOLS (63 files, 10758 lines)
         COMPILE_COMPAT (4 files, 131 lines)
         docs (1 files, 79 lines)
         refactor (2 files, 32 lines)
         release (2 files, 407 lines)
     STAT (9 files, 2155 lines)
     TEMPLATES (49 files, 8454 lines)
     TEST (0 files, 0 lines)
     TESTAWT (0 files, 0 lines)
     TESTVECTORFONT (0 files, 0 lines)
     TOOLS (28 files, 12380 lines)
     TREEGEN (17 files, 1454 lines)
     TREE_COMPRESS (0 files, 0 lines)
     TRS (0 files, 0 lines)
     UNIT_TESTER (24 files, 6144 lines)
         flags (1 files, 2 lines)
         run (42 files, 21338 lines)
             consense (0 files, 0 lines)
                 1 (7 files, 475 lines)
                 2 (5 files, 894 lines)
                 3 (4 files, 1543 lines)
                 4 (3 files, 146 lines)
                 6 (1 files, 49 lines)
             diff (4 files, 72 lines)
             display (25 files, 17249 lines)
             distance (5 files, 151 lines)
             fakehome (0 files, 0 lines)
             general (6 files, 90 lines)
             help (3 files, 933 lines)
             homefake (0 files, 0 lines)
                 .arb_prop (1 files, 1 lines)
             impexp (39 files, 4469 lines)
             pars (22 files, 828 lines)
             pvp (4 files, 63 lines)
             tools (23 files, 475 lines)
             trees (1 files, 27 lines)
             xsub (4 files, 511 lines)
         sockets (0 files, 0 lines)
         valgrind (2 files, 179 lines)
     WETC (3 files, 163 lines)
     WINDOW (75 files, 26384 lines)
     XML (4 files, 499 lines)
     XML_IMPORT (0 files, 0 lines)
         IMP_TREE (0 files, 0 lines)
     bin (2 files, 219 lines)
     doc (1 files, 85 lines)
     etc (6 files, 5366 lines)
     fig2dev (0 files, 0 lines)
         dev (0 files, 0 lines)
     lib (8 files, 12081 lines)
         BUGS (2 files, 69 lines)
         addlibs (1 files, 14 lines)
         arb_default (7 files, 694 lines)
         desktop (4 files, 21 lines)
         dtd (2 files, 92 lines)
         export (14 files, 130 lines)
         gde (2 files, 28 lines)
         icons (0 files, 0 lines)
         import (9 files, 680 lines)
             nonformats (7 files, 783 lines)
         inputMasks (9 files, 343 lines)
         macros (8 files, 522 lines)
             .checks (3 files, 675 lines)
             ARB (0 files, 0 lines)
                 SEQ_DATA (1 files, 111 lines)
         motifHack (3 files, 322 lines)
             pixmaps (0 files, 0 lines)
         nas (3 files, 18 lines)
         pictures (103 files, 3735 lines)
             PARS (0 files, 0 lines)
             awt (19 files, 599 lines)
             awtc (2 files, 47 lines)
             consensus (2 files, 368 lines)
             cpro (2 files, 72 lines)
             demo (0 files, 0 lines)
             edit4 (17 files, 839 lines)
             etc (0 files, 0 lines)
             faligner (3 files, 139 lines)
             findcorr (0 files, 0 lines)
             merge (12 files, 473 lines)
             pars (3 files, 184 lines)
             phylo (3 files, 67 lines)
             query (5 files, 133 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
                 demo (0 files, 0 lines)
                 findcorr (0 files, 0 lines)
             window (1 files, 24 lines)
         pixmaps (84 files, 3509 lines)
             edit (20 files, 602 lines)
                 unused (0 files, 0 lines)
             icons (7 files, 273 lines)
                 unused (0 files, 0 lines)
             merge (1 files, 48 lines)
             pgt (0 files, 0 lines)
             print (6 files, 239 lines)
                 unused (0 files, 0 lines)
             seer (0 files, 0 lines)
             unused (0 files, 0 lines)
         protein_2nd_structure (0 files, 0 lines)
         rna3d (5 files, 4617 lines)
             images (17 files, 0 lines)
         sellists (9 files, 100 lines)
         submit (3 files, 1061 lines)
     ptpan (0 files, 0 lines)
     util (19 files, 1791 lines)