-
westram
2001-05-31 22:37
#35
Rev.: 205
-
633 lines of code changed in 18 files:
-
ARBDB:
ad_lpro.h (+1),
ad_prot.h (+2),
ad_t_prot.h (+3),
adlang1.c (+83 -26),
adquery.c (+53 -28),
adstring.c (+111 -49),
adtools.c (+78 -2)
-
AWT:
AWT_query_and_functions.cxx (+3 -3),
AWT_species_sel_box.cxx (+61 -38)
-
AWTC:
AWTC_rename.cxx (+7 -1)
-
GENOM:
GEN.hxx (+18),
GEN_color_groups.cxx (new 14),
GEN_color_groups.hxx (new 17),
GEN_db.cxx (+111 -40),
GEN_gene.hxx (+4),
GEN_interface.cxx (+62 -4),
Makefile (+4 -2)
-
NTREE:
NT_edconf.cxx (+1 -1)
-
westram
2001-05-23 19:39
#34
Rev.: 204
-
1 lines of code changed in 1 file:
-
GENOM:
GEN_map.cxx (+1 -1)
-
westram
2001-05-23 19:24
#33
Rev.: 203
-
1 lines of code changed in 1 file:
-
westram
2001-05-23 17:44
#32
Rev.: 202
-
503 lines of code changed in 16 files:
-
EDIT4:
ed4_awars.hxx (+1 -1)
-
NTREE:
NT_extern.cxx (+1 -1)
-
PERL2ARB:
Makefile (+6 -6)
-
PRIMER_DESIGN:
Makefile (+17 -11),
PRD_Design.cxx (+16 -4),
PRD_Design.hxx (+8 -4),
PRD_Item.cxx (+26 -13),
PRD_Item.hxx (+13 -10),
PRD_Pair.cxx (+67 -21),
PRD_Pair.hxx (+3 -1),
PRD_Range.hxx (+2 -2),
primer_design.cxx (+137 -54),
primer_design.hxx (+1 -1)
-
PROBE_DESIGN:
probe_design.cxx (+195 -195)
-
WINDOW:
AW_button.cxx (+4 -4),
aw_awars.hxx (+6 -5)
-
foerster
2001-05-23 14:14
#31
Rev.: 201
-
802 lines of code changed in 17 files:
-
PRIMER_DESIGN:
PRD_Design.cxx (+338 -305),
PRD_Design.hxx (+46 -37),
PRD_Globals.hxx (+22 -13),
PRD_Item.cxx (+24 -9),
PRD_Item.hxx (+7 -8),
PRD_Node.cxx (+2 -2),
PRD_Node.hxx (+10 -10),
PRD_Pair.cxx (+24 -3),
PRD_Pair.hxx (+1 -1),
PRD_Range.cxx (+18 -11),
PRD_Range.hxx (+4 -5),
PRD_SearchFIFO.cxx (+73 -163),
PRD_SearchFIFO.hxx (+15 -21),
PRD_SequenceIterator.cxx (+5 -5),
PRD_SequenceIterator.hxx (+9 -9),
primer_design.cxx (+151 -120)
-
lib/pictures:
prd_main.fig (+53 -39)
-
westram
2001-05-23 12:42
#30
Rev.: 200
-
1681 lines of code changed in 34 files:
-
Makefile (+21 -6)
-
ARBDB:
ad_t_prot.h (+1),
adlang1.c (+7 -34),
adtools.c (+64)
-
AWT:
AWT_dtree.cxx (+10 -8),
AWT_nds.cxx (+35 -37),
AWT_query_and_functions.cxx (+17 -1),
awt.hxx (+2 -1)
-
AWTC:
AWTC_rename.cxx (+58 -8),
awtc_rename.hxx (+2 -1)
-
EDIT4:
ED4_main.cxx (+1),
ED4_no_class.cxx (+6 -29)
-
GENOM:
GEN.hxx (+22 -12),
GEN_db.cxx (+70 -29),
GEN_gene.cxx (+44 -20),
GEN_gene.hxx (+21 -15),
GEN_graphic.cxx (+130 -122),
GEN_interface.cxx (+41 -27),
GEN_interface.hxx (new 16),
GEN_local.hxx (+9 -1),
GEN_map.cxx (+435 -45),
GEN_map.hxx (+1 -1),
GEN_nds.cxx (new 445),
GEN_nds.hxx (new 17),
Makefile (+31 -10)
-
NTREE:
NT_extern.cxx (+2 -2),
ad_spec.cxx (+35 -12),
ad_spec.hxx (+2 -1),
nt_internal.h (+2)
-
WINDOW:
aw_awars.hxx (+12 -5)
-
lib/nas:
names.dat (+94)
-
lib/pictures:
ad_spec.fig (+8 -8),
gene_info.fig (+8 -10),
gene_layout.fig (+12 -12)
-
meierh
2001-05-09 18:19
#29
Rev.: 199
-
11 lines of code changed in 1 file:
-
AWTI:
AWTI_import.cxx (+11 -8)
-
meierh
2001-05-09 13:08
#28
Rev.: 198
-
14 lines of code changed in 1 file:
-
lib/pictures/awt:
import_db.fig (+14 -16)
-
meierh
2001-05-09 13:07
#27
Rev.: 197
-
5 lines of code changed in 1 file:
-
AWTI:
AWTI_import.cxx (+5 -1)
-
jobb
2001-05-07 15:55
#26
Rev.: 196
-
279 lines of code changed in 6 files:
-
GDEHELP:
ARB_GDEmenus.source (+2 -1),
dnapars.help (new 254)
-
GDEHELP/MENUS:
fastdnaml.menu (+1 -1),
import.menu (-8),
phylip_pars.menu (+7 -20),
puzzle.menu (new 15)
-
jobb
2001-05-07 15:54
#25
Rev.: 195
-
0 lines of code changed in 1 file:
-
GDEHELP:
ARB_GDEmenus (del)
-
jobb
2001-05-07 15:52
#24
Rev.: 194
-
396 lines of code changed in 2 files:
-
TOOLS:
Makefile (+396 -395),
arb_jim.cxx (del)
-
westram
2001-05-07 15:33
#23
Rev.: 193
-
7 lines of code changed in 1 file:
-
jobb
2001-05-07 15:33
#22
Rev.: 192
-
126 lines of code changed in 1 file:
-
GDE/TREEPUZZLE:
Makefile (+126 -1)
-
jobb
2001-05-07 15:30
#21
Rev.: 191
-
20126 lines of code changed in 53 files:
-
GDE/TREEPUZZLE:
AUTHORS (new 45),
COPYING (new 340),
ChangeLog (new 347),
INSTALL (new),
Makefile (new 32),
Makefile.am (new),
Makefile.in (new),
Makefile.org (new),
NEWS (new),
README (new 33),
aclocal.m4 (new),
config.log (new),
config.status (new),
configure (new),
configure.in (new),
install-sh (new),
missing (new),
mkinstalldirs (new)
-
GDE/TREEPUZZLE/data:
Makefile (new),
Makefile.am (new),
Makefile.in (new),
marswolf.n (new),
primates.b (new)
-
GDE/TREEPUZZLE/doc:
Makefile (new),
Makefile.am (new),
Makefile.in (new),
manual.html (new 1653),
ppuzzle.gif (new),
puzzle.gif (new)
-
GDE/TREEPUZZLE/src:
Makefile (new),
Makefile.am (new),
Makefile.in (new),
README (new 1),
gamma.c (new 346),
gamma.h (new 30),
ml.h (new 279),
ml1.c (new 1734),
ml2.c (new 1848),
ml3.c (new 350),
model1.c (new 326),
model2.c (new 1125),
ppuzzle.c (new 2418),
ppuzzle.h (new 274),
puzzle (new),
puzzle.h (new 493),
puzzle1.c (new 4481),
puzzle2.c (new 2651),
sched.c (new 423),
sched.h (new 53),
test (new),
test.in (new),
util.c (new 748),
util.h (new 96)
-
jobb
2001-05-07 15:28
#20
Rev.: 190
-
4 lines of code changed in 1 file:
-
westram
2001-05-04 18:17
#19
Rev.: 189
-
1 lines of code changed in 1 file:
-
westram
2001-05-04 18:10
#18
Rev.: 188
-
1 lines of code changed in 1 file:
-
NTREE:
NT_extern.cxx (+1 -1)
-
westram
2001-05-04 18:09
#17
Rev.: 187
-
142 lines of code changed in 4 files:
-
GENOM:
GEN_map.cxx (+7 -25)
-
WINDOW:
AW_button.cxx (-6),
aw_at.hxx (+36 -37),
aw_window.hxx (+99 -99)
-
jobb
2001-05-04 16:35
#16
Rev.: 186
-
4 lines of code changed in 2 files:
-
ARBDB:
adtools.c (+3 -2)
-
TOOLS:
arb_read_tree.cxx (+1 -1)
-
westram
2001-05-04 15:54
#15
Rev.: 185
-
123 lines of code changed in 3 files:
-
WINDOW:
AW_at.cxx (+10 -11),
AW_button.cxx (+110 -101),
aw_window.hxx (+3 -1)
-
westram
2001-05-04 15:46
#14
Rev.: 184
-
10 lines of code changed in 1 file:
-
GENOM:
GEN_map.cxx (+10 -2)
-
jobb
2001-05-04 14:57
#13
Rev.: 183
-
22 lines of code changed in 5 files:
-
GDE/FASTDNAML:
Makefile (new 22),
fastDNAml_1_0.h (new),
fastDNAml_1_0_6.c (new),
fastDNAml_doc.txt (new)
-
GDEHELP:
fastdnaml.help (new)
-
jobb
2001-05-04 14:54
#12
Rev.: 182
-
2 lines of code changed in 2 files:
-
GDEHELP:
ARB_GDEmenus (+1 -1)
-
GDEHELP/MENUS:
fastdnaml.menu (+1 -1)
-
jobb
2001-05-04 14:52
#11
Rev.: 181
-
81215 lines of code changed in 91 files:
-
GDE/PHYLIP:
Makefile (new 415),
Makefile.qc (new 101),
Makefile.tc (new 114),
README (new 192),
clique.c (new 1719),
clique.doc (new 252),
compile.com (new 100),
consense.c (new 1399),
consense.doc (new 252),
contchar.doc (new 126),
contml.c (new 1902),
contml.doc (new 315),
contrast.c (new 779),
contrast.doc (new 189),
discrete.doc (new 378),
distance.doc (new 315),
dnacomp.c (new 2299),
dnacomp.doc (new 252),
dnadist.c (new 1346),
dnadist.doc (new 441),
dnainvar.c (new 1127),
dnainvar.doc (new 441),
dnaml.c (new 1286),
dnaml.doc (new 567),
dnaml2.c (new 1435),
dnamlk.c (new 1318),
dnamlk.doc (new 567),
dnamlk2.c (new 1569),
dnamove.c (new 2277),
dnamove.doc (new 315),
dnapars.c (new 2230),
dnapars.doc (new 252),
dnapenny.c (new 1913),
dnapenny.doc (new 819),
dollop.c (new 2052),
dollop.doc (new 315),
dolmove.c (new 2342),
dolmove.doc (new 378),
dolpenny.c (new 1677),
dolpenny.doc (new 567),
draw.doc (new 693),
drawgram.c (new 1003),
drawgram.doc (new 252),
drawgraphics.c (new 2205),
drawgraphics.h (new 59),
drawtree.c (new 1189),
drawtree.doc (new 189),
factor.c (new 646),
factor.doc (new 315),
fitch.c (new 1892),
fitch.doc (new 189),
font1 (new 193),
font2 (new 301),
font3 (new 396),
font4 (new 293),
font5 (new 399),
font6 (new 370),
gendist.c (new 462),
gendist.doc (new 252),
interface.c (new 538),
interface.h (new 42),
kitsch.c (new 1559),
kitsch.doc (new 252),
main.doc (new 4288),
makeinf.c (new 682),
makeinf.doc (new 355),
mix.c (new 1046),
mix.doc (new 378),
mix2.c (new 1322),
move.c (new 2483),
move.doc (new 378),
neighbor.c (new 1080),
neighbor.doc (new 189),
penny.c (new 1922),
penny.doc (new 567),
phylip.h (new 180),
protdist.c (new 1608),
protdist.doc (new 315),
protml.doc (new 728),
protml.pas (new 3509),
protpars.c (new 2361),
protpars.doc (new 378),
restml.c (new 1060),
restml.doc (new 441),
restml2.c (new 1528),
retree.c (new 2381),
retree.doc (new 315),
seqboot.c (new 956),
seqboot.doc (new 315),
sequence.doc (new 378),
vaxfix.c (new 50)
-
jobb
2001-05-04 14:19
#10
Rev.: 180
-
0 lines of code changed in 46 files:
-
GDE/PHYLIP:
Makefile (del),
clique.c (del),
coallike.c (del),
consense.c (del),
contml.c (del),
contrast.c (del),
dnacomp.c (del),
dnadist.c (del),
dnainvar.c (del),
dnaml.c (del),
dnaml2.c (del),
dnamlk.c (del),
dnamlk2.c (del),
dnamove.c (del),
dnapars.c (del),
dnapenny.c (del),
dollop.c (del),
dolmove.c (del),
dolpenny.c (del),
drawgram.c (del),
drawgraphics.c (del),
drawgraphics.h (del),
drawtree.c (del),
factor.c (del),
fitch.c (del),
gendist.c (del),
interface.c (del),
interface.h (del),
kitsch.c (del),
makeinf.c (del),
mix.c (del),
mix2.c (del),
move.c (del),
neighbor.c (del),
p2c.h (del),
p2clib.c (del),
penny.c (del),
phylip.h (del),
protdist.c (del),
protml.c (del),
protpars.c (del),
restml.c (del),
restml2.c (del),
retree.c (del),
seqboot.c (del),
vaxfix.c (del)
-
jobb
2001-05-04 12:35
#9
Rev.: 179
-
0 lines of code changed in 4 files:
-
GDE/FASTDNAML:
Makefile (del),
fastDNAml_1_0.h (del),
fastDNAml_1_0_4.c (del),
fastdnaml.c (del)
-
westram
2001-05-04 12:14
#8
Rev.: 178
-
10 lines of code changed in 1 file:
-
GENOM:
GEN_map.cxx (+10 -2)
-
westram
2001-05-04 12:08
#7
Rev.: 177
-
3 lines of code changed in 1 file:
-
GENOM:
GEN_map.cxx (+3 -3)
-
jobb
2001-05-04 11:51
#6
Rev.: 176
-
20148 lines of code changed in 37 files:
-
GDE/CLUSTALW:
Makefile (new 217),
README (new 261),
alnscore.c (new 114),
amenu.c (new 1296),
calcgapcoeff.c (new 497),
calcprf1.c (new 99),
calcprf2.c (new 73),
calctree.c (new 988),
clustalv.doc (new 1978),
clustalw.c (new 119),
clustalw.doc (new 758),
clustalw.h (new 246),
clustalw.ms (new 795),
clustalw_help (new 666),
coldna.par (new),
colprint.par (new),
colprot.par (new),
dayhoff.h (new 45),
gcgcheck.c (new 15),
general.h (new 50),
globin.pep (new 87),
gon90.bla (new 24),
interface.c (new 3823),
makefile.org (new 38),
malign.c (new 654),
matrices.h (new 854),
matrixseries.gon (new 7),
pairalign.c (new 615),
param.h (new 362),
phcolor.par (new),
prfalign.c (new 1131),
random.c (new 81),
readmat.c (new 477),
sequence.c (new 1373),
showpair.c (new 486),
trees.c (new 1514),
util.c (new 405)
-
jobb
2001-05-04 11:47
#5
Rev.: 175
-
0 lines of code changed in 26 files:
-
GDE/CLUSTALW:
Makefile (del),
alnscore.c (del),
amenu.c (del),
calcgapcoeff.c (del),
calcprf1.c (del),
calcprf2.c (del),
calctree.c (del),
clustalw.c (del),
clustalw.h (del),
clustalw_help (del),
clustalw_help.h (del),
dayhoff.h (del),
gcgcheck.c (del),
general.h (del),
interface.c (del),
malign.c (del),
matrices.h (del),
pairalign.c (del),
param.h (del),
prfalign.c (del),
random.c (del),
readmat.c (del),
sequence.c (del),
showpair.c (del),
trees.c (del),
util.c (del)
-
jobb
2001-05-04 11:38
#4
Rev.: 174
-
101 lines of code changed in 4 files:
-
GDEHELP:
ARB_GDEmenus (+55 -29),
ARB_GDEmenus.source (+2 -2)
-
GDEHELP/MENUS:
align.menu (+43 -17),
fastdnaml.menu (+1 -1)
-
westram
2001-05-03 17:11
#3
Rev.: 173
-
65 lines of code changed in 1 file:
-
NTREE:
nt_internal.h (new 65)
-
westram
2001-05-03 17:10
#2
Rev.: 172
-
154 lines of code changed in 4 files:
-
lib/nas:
names.dat (+11)
-
lib/pictures:
gene_layout.fig (+24 -9),
gene_options.fig (new 21)
-
lib/pictures/merge:
species.fig (+98 -89)
-
westram
2001-05-03 17:04
#1
Rev.: 171
-
621 lines of code changed in 21 files:
-
Makefile (+2 -6)
-
AWT:
AWT_query_and_functions.cxx (+2 -2),
AWT_species_sel_box.cxx (+10)
-
AWTC:
AWTC_constructSequence.cxx (-1),
AWTC_fast_aligner.cxx (+1 -4),
awtc_fast_aligner.hxx (-8)
-
AWTI:
AWTI_import.cxx (+22 -8)
-
EDIT4:
ED4_block.cxx (+9 -8),
ED4_root.cxx (-1)
-
GENOM:
GEN_gene.cxx (+97 -16),
GEN_gene.hxx (+23 -6),
GEN_graphic.cxx (+152 -98),
GEN_graphic.hxx (+3 -1),
GEN_local.hxx (+6),
GEN_map.cxx (+234 -55),
Makefile (+6 -2)
-
MERGE:
MG_main.cxx (+1),
MG_species.cxx (+43 -4)
-
NTREE:
NT_extern.cxx (+2),
ntree.hxx (+2 -2)
-
PERL2ARB:
Makefile (+6 -6)