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westram
2018-04-30 17:27
#5
Rev.: 16936
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64 lines of code changed in 42 files:
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Makefile (-2)
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ARBDB:
arbdb.cxx (+3 -8)
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AWT:
AWT_canio.cxx (+1 -17),
AWT_sel_boxes.cxx (+3 -30)
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CORE:
arb_assert.h (+6 -10)
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DIST:
DI_matr.cxx (-2)
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EDIT4:
ED4_root.cxx (+3 -16),
ed4_class.hxx (+2 -7),
ed4_defs.hxx (-4)
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GENOM:
GEN_map.cxx (-2)
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HELP_SOURCE/oldhelp:
copyNpaste.hlp (-2)
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NTREE:
NT_extern.cxx (-12)
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PARSIMONY:
PARS_main.cxx (-5)
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PHYLO:
PH_main.cxx (-9)
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SECEDIT:
SEC_paint.cxx (-8),
SEC_root.hxx (-4)
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SL/CB:
cb.h (+1 -1)
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SL/DB_QUERY:
db_query.cxx (-5)
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SL/ITEMS:
item_sel_list.cxx (-3)
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SL/MACROS:
dbserver.cxx (-8)
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SL/TREEDISP:
TreeDisplay.cxx (+2 -6)
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SOURCE_TOOLS:
arb_main.h (+5 -6),
build_info.pl (-1),
check_resources.pl (-6),
export2sub (-1)
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UNIT_TESTER:
UnitTester.cxx (+2 -6)
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WINDOW:
AW_at.cxx (-6),
AW_button.cxx (+1 -1),
AW_device_click.cxx (-15),
AW_help.cxx (-5),
AW_option_toggle.cxx (+3 -24),
AW_preset.cxx (+2 -7),
AW_rgb.cxx (+1 -21),
AW_select.cxx (+3 -18),
AW_window.cxx (+2 -64),
Makefile (+3),
aw_at.hxx (-5),
aw_keysym.hxx (-5),
aw_localdef.hxx (new 20),
aw_rgb.hxx (-8),
aw_select.hxx (+1 -5),
aw_window.hxx (-24)
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westram
2018-04-25 10:08
#4
Rev.: 16919
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425 lines of code changed in 10 files:
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BINDEP:
needs_libs.arb_calc_pvp (new 7),
needs_libs.arb_sub2ascii (new 3)
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SOURCE_TOOLS:
dep.alltargets (+2)
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TEMPLATES:
command_output.h (+16 -10)
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TOOLS:
Makefile (+55),
arb_calc_pvp.cxx (new 188),
arb_sub2ascii.cxx (new 79),
arb_test.cxx (+47 -1)
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UNIT_TESTER:
Makefile.test (+1)
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UNIT_TESTER/run/trees:
nuc_flipped.tree (new 27)
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westram
2018-04-20 12:04
#3
Rev.: 16904
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135 lines of code changed in 18 files:
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Makefile (+3),
arb_CHANGES.txt (+6 -3)
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NTREE:
AP_pos_var_pars.cxx (+17 -320),
AP_pos_var_pars.h (del),
Makefile (+1 -3),
ad_trees.cxx (+52 -49),
needs_libs (+1)
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SL/PRONUC:
AP_pro_a_nucs.cxx (+4 -4),
AP_pro_a_nucs.hxx (+12 -8)
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SL/TREE_READ:
TreeRead.cxx (+27),
TreeRead.h (+2 -2)
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SOURCE_TOOLS:
dep.4dummy (+2 -1),
dep.alltargets (+1),
dep.libtargets (+1),
dependency_graphs.pl (+2 -1),
generate_all_links.sh (+1),
vectorized.source (+1 -1)
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UNIT_TESTER:
test_unit.h (+2 -2)
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westram
2018-04-11 15:48
#2
Rev.: 16880
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440 lines of code changed in 27 files:
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Makefile (+9)
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DIST:
DI_clustertree.cxx (+9 -8),
di_clustertree.hxx (+1)
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PARSIMONY:
AP_buffer.cxx (+1 -1),
AP_buffer.hxx (+3 -3),
AP_tree_edge.cxx (+10 -10),
AP_tree_nlen.cxx (+25 -25),
PARS_dtree.cxx (+22 -22),
PARS_main.cxx (+58 -42),
PerfMeter.h (+8 -8),
ap_tree_nlen.hxx (+14 -11),
pars_main.hxx (+1 -1),
test_env.h (+4 -4)
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SL/ARB_TREE:
ARB_Tree.hxx (+10 -6)
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SL/FILTER:
AP_filter.hxx (+1 -1)
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SL/GUI_ALIVIEW:
ColumnStat.cxx (+1 -1)
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SL/SEQUENCE:
AP_seq_dna.cxx (+163 -58),
AP_seq_dna.hxx (+6 -8),
AP_seq_protein.cxx (+20 -25),
AP_seq_protein.hxx (+6 -8),
AP_seq_simple_pro.cxx (-25),
AP_seq_simple_pro.hxx (-10),
AP_sequence.cxx (+3 -3),
AP_sequence.hxx (+57 -25)
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STAT:
MostLikelySeq.hxx (-9),
ST_ml.cxx (-22)
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TEMPLATES:
cxxforward.h (+8 -5)
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westram
2018-04-05 11:09
#1
Rev.: 16873
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13 lines of code changed in 13 files:
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arb_install.sh (+1 -1)
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AISC_MKPTPS:
mkptypes.cxx (+1 -1)
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ARBDB:
adfile.cxx (+1 -1),
adseqcompr.cxx (+1 -1)
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AWTI:
AWTI_import.cxx (+1 -1)
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HELP_SOURCE/oldhelp:
realign_dna.hlp (+1 -1)
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SL/FAST_ALIGNER:
fast_aligner.cxx (+1 -1)
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SL/PRONUC:
AP_codon_table.cxx (+1 -1)
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SL/TREEDISP:
TreeCallbacks.cxx (+1 -1)
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SOURCE_TOOLS:
postcompile.pl (+1 -1)
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WINDOW:
AW_clipable.cxx (+1 -1),
AW_inotify.cxx (+1 -1)
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util:
arb_srclst.pl (+1 -1)