June 2007 Commit Log

Number of Commits:

23

Number of Active Developers:

2

westram 2007-06-29 20:03 #23 Rev.: 4676

*** empty log message ***

1 lines of code changed in 1 file:

• NTREE: ad_transpro.cxx (+1 -4)

westram 2007-06-29 20:03 #22 Rev.: 4675

- call NT_create_trackAliChanges_window + NT_create_trackAliChanges_Awars

6 lines of code changed in 1 file:

• NTREE: NT_extern.cxx (+6 -3)

westram 2007-06-29 20:03 #21 Rev.: 4674

- added NT_trackAliChanges.o

3 lines of code changed in 1 file:

• NTREE: Makefile (+3 -1)

westram 2007-06-29 20:03 #20 Rev.: 4673

- sequence/alignment change tracker

273 lines of code changed in 4 files:

• HELP_SOURCE/oldhelp: track_ali_changes.hlp (new 31)
• NTREE: NT_trackAliChanges.cxx (new 198), NT_trackAliChanges.h (new 21)
• lib/pictures: trackali.fig (new 23)

westram 2007-06-29 15:17 #19 Rev.: 4672

- added prefixSSH (used to start remote commands)
- arb_start_server():
. use prefixSSH to build remote-server call
. when starting server on localhost use ':port' instead of 'localhost:port'
- arb_trace_argv automatically prefixes ':port' with 'localhost'
- if dbname is '!ASSUME_RUNNING', do not check for file-existance in arb_start_server()

70 lines of code changed in 1 file:

• SERVERCNTRL: servercntrl.c (+70 -35)

westram 2007-06-29 15:15 #18 Rev.: 4671

- added prefixSSH

1 lines of code changed in 1 file:

• SERVERCNTRL: servercntrl.h (+1)

westram 2007-06-29 15:15 #17 Rev.: 4670

- use prefixSSH to build remote-arb_who call
- 'kill' -> 'stop'
- suppress error about missing ARB_PT_SERVER##-entry

41 lines of code changed in 1 file:

• PROBE_DESIGN: probe_design.cxx (+41 -30)

westram 2007-06-29 15:12 #16 Rev.: 4669

- added note about '!ASSUME_RUNNING'

3 lines of code changed in 1 file:

• lib: arb_tcp_org.dat (+3)

westram 2007-06-29 13:46 #15 Rev.: 4668

- added warning

4 lines of code changed in 1 file:

• MULTI_PROBE: MP_Window.cxx (+4)

westram 2007-06-29 13:46 #14 Rev.: 4667

- suppress error about missing ARB_PT_SERVER##-entry

5 lines of code changed in 1 file:

• PROBE_SERVER/PROBE_GROUP_DESIGN: pgd_main.cxx (+5 -2)

westram 2007-06-29 13:46 #13 Rev.: 4666

- suppress error about missing ARB_PT_SERVER##-entry, by first retrieving all
pt-server-entries, then querying them.

14 lines of code changed in 1 file:

• AWT: AWT_sel_boxes.cxx (+14 -2)

westram 2007-06-29 13:41 #12 Rev.: 4665

*** empty log message ***

1 lines of code changed in 1 file:

• ARBDB: ad_t_lpro.h (+1 -1)

westram 2007-06-29 13:40 #11 Rev.: 4664

- handle 127.0.0.* as local

3 lines of code changed in 1 file:

• ARBDB: adsocket.c (+3 -2)

westram 2007-06-29 13:40 #10 Rev.: 4663

- GB_strpartdup: if end==0 -> act like GB_strdup

16 lines of code changed in 1 file:

• ARBDB: admalloc.c (+16 -10)

baderk 2007-06-28 16:49 #9 Rev.: 4662

Fixed a bug which appeared when no tree was selected.

23 lines of code changed in 1 file:

• SEQ_QUALITY: SQ_main.cxx (+23 -23)

baderk 2007-06-28 13:42 #8 Rev.: 4661

Rearranged dialog appearance - increased usability.

39 lines of code changed in 1 file:

• lib/pictures: seq_quality.fig (+39 -33)

baderk 2007-06-27 17:43 #7 Rev.: 4660

Added new selectable option: quality evaluation only on marked branches in a tree.

73 lines of code changed in 3 files:

• SEQ_QUALITY: SQ_functions.cxx (+18 -7), SQ_functions.h (+2 -1), SQ_main.cxx (+53 -21)

baderk 2007-06-27 17:41 #6 Rev.: 4659

Added selection box 'evaluate only marked species' to dialog.

19 lines of code changed in 1 file:

• lib/pictures: seq_quality.fig (+19 -15)

baderk 2007-06-26 17:41 #5 Rev.: 4658

No functional changes. Sourcecode reformatted according to K&R.

1084 lines of code changed in 8 files:

• SEQ_QUALITY: SQ_GroupData.cxx (+41 -33), SQ_ambiguities.h (+34 -27), SQ_functions.cxx (+719 -507), SQ_functions.h (+26 -18), SQ_helix.h (+72 -59), SQ_main.cxx (+142 -123), SQ_physical_layout.h (+47 -39), seq_quality.h (+3 -3)

baderk 2007-06-26 10:19 #4 Rev.: 4657

Flagged DEVEL_KAI: Maximum number of returned probe matches increased to 256k.

5 lines of code changed in 1 file:

• PROBE: probe.h (+5)

baderk 2007-06-26 10:10 #3 Rev.: 4656

No functional changes. Sourcecode reformatted according to K&R. Tabs removed.

695 lines of code changed in 5 files:

• STAT: ST_ml.cxx (+417 -288), ST_quality.cxx (+130 -95), ST_window.cxx (+109 -74), st_quality.hxx (+15 -15), st_window.hxx (+24 -16)

baderk 2007-06-21 14:06 #2 Rev.: 4655

Fixed buffer overflow in quality string generation

1 lines of code changed in 1 file:

• STAT: ST_quality.cxx (+1 -1)

westram 2007-06-01 11:23 #1 Rev.: 4654

- fixed decompression bug introduced by rev 1.9

16 lines of code changed in 1 file:

• ARBDB: adseqcompr.c (+16 -8)

May 2007 »