March 2010 Commit Log

Number of Commits:
71
Number of Active Developers:
1
westram 2010-03-31 20:13 Rev.: 6565


* fixed a bug in merge_mapping(), which caused WRONG mapping
* no longer collect inconsistency detail; instead only count and warn about inconsistency and useless references.

69 lines of code changed in 1 file:

westram 2010-03-31 14:55 Rev.: 6564


- do only report "real" inconsistencies

2 lines of code changed in 1 file:

westram 2010-03-31 14:29 Rev.: 6563


- only warn about inconsistencies while creating adaption map (rest is considered SPAM)

0 lines of code changed in 1 file:

westram 2010-03-31 13:56 Rev.: 6562


- hack: use fprintf instead of aw_message (which overflows)
- added failing test

7 lines of code changed in 1 file:

westram 2010-03-31 09:44 Rev.: 6561


* store and warn about mapping inconsistencies

76 lines of code changed in 1 file:

westram 2010-03-31 07:52 Rev.: 6560


* rewrote alignment-remapping (merge-tool)
- fixes all broken tests
- main-mapping now only violated if no other possibility

586 lines of code changed in 1 file:

westram 2010-03-26 08:14 Rev.: 6559


* additional option to restrict tests to one library
* remove .gcda after running gcov (to avoid collection of multiple runs)

26 lines of code changed in 2 files:

westram 2010-03-26 07:47 Rev.: 6558


* shortcut and help for unit_tests

5 lines of code changed in 1 file:

westram 2010-03-26 07:47 Rev.: 6557


* more tests
- leading/trailing gaps
- drop dots to avoid misalignment

25 lines of code changed in 1 file:

westram 2010-03-25 12:43 Rev.: 6556


* Configuration menu
- fixed segfault (occurring in nearly every function)
- treedisplay automatically refreshes
* NT_start_editor_on_tree()
- catch errors from GBCMC_system()
- show error message (do not rely on NT_create_configuration)
* NT_create_configuration()
- made local
- fixed error handling (only returns error now - no longers shows or exports any)
- fixed memory leak

141 lines of code changed in 2 files:

westram 2010-03-25 12:41 Rev.: 6555


- useresult attribute for GBCMC_system()

10 lines of code changed in 3 files:

westram 2010-03-24 09:23 Rev.: 6554


- more remap tests

22 lines of code changed in 1 file:

westram 2010-03-23 20:29 Rev.: 6552


* stuffed memory leak + do not shorten existing mappings
- fixes illegal mem-access
- fixes two broken tests

14 lines of code changed in 1 file:

westram 2010-03-23 20:10 Rev.: 6551


* MG_remap / MG_remaps only used in one module -> decl there

34 lines of code changed in 2 files:

westram 2010-03-23 20:04 Rev.: 6550


- split AWTI into gui/nongui parts (only for export atm, non-gui import code may go to SL/SEQIO later)

994 lines of code changed in 13 files:

westram 2010-03-23 16:41 Rev.: 6549


* GB_status2() -> GB_status()
* GB_install_status() installs both status functions now
* removed C++->C-wrappers and casts in AW_window.cxx

45 lines of code changed in 6 files:

westram 2010-03-22 12:55 Rev.: 6548


- documented wrong behavior (added tests assuming wrong behavior)

27 lines of code changed in 1 file:

westram 2010-03-22 12:08 Rev.: 6547


* added possibility to restrict tests by regexpr (match source file names)

57 lines of code changed in 3 files:

westram 2010-03-22 11:42 Rev.: 6546


* added unit-tests for remapping of alignment during merge (documenting several remap problems)

239 lines of code changed in 5 files:

westram 2010-03-19 13:53 Rev.: 6545


- memleak

2 lines of code changed in 1 file:

westram 2010-03-19 13:46 Rev.: 6544


- error handling fixed

43 lines of code changed in 2 files:

westram 2010-03-19 13:29 Rev.: 6543


- error handling fixed

21 lines of code changed in 4 files:

westram 2010-03-19 12:32 Rev.: 6541


* splitted GB_export_IO_error() into GB_IO_error() and GB_export_IO_error()
- marked GB_export_IO_error() deprecated (use GB_export_error(GB_IO_error())!)
* fixed error handling for several functions

65 lines of code changed in 3 files:

westram 2010-03-18 15:52 Rev.: 6540


- re-added test-case

3 lines of code changed in 1 file:

westram 2010-03-18 15:46 Rev.: 6539


- NDEBUG mode fix for TEST_ASSERT_SEGFAULT

19 lines of code changed in 3 files:

westram 2010-03-18 14:59 Rev.: 6538


* wrote more tests for ARBDB/adhash.cxx
- test-coverage is complete now

197 lines of code changed in 2 files:

westram 2010-03-18 14:56 Rev.: 6537


- (strange) memleak?

1 lines of code changed in 1 file:

westram 2010-03-18 14:55 Rev.: 6535


- use relative paths

0 lines of code changed in 1 file:

westram 2010-03-18 09:13 Rev.: 6534


* more pretty output of uncovered lines
* skip uncovered lines for files w/o TEST-functions
* intentionally uncovered lines can be marked with 'NEED_NO_COV'

88 lines of code changed in 2 files:

westram 2010-03-17 18:09 Rev.: 6533


- helper function to detect SIGSEGV

47 lines of code changed in 2 files:

westram 2010-03-17 17:38 Rev.: 6532


patch from elmar (thx)

* mark_all_matches doesn't use PT_local*, so don't pass it
* turn C style stack variable allocations into C++ style ones
* allocate temporary list on stack instead of heap
* if requested result limited by ff_sort_max, don't pass full list to aisc

38 lines of code changed in 1 file:

westram 2010-03-17 14:46 Rev.: 6531


- depends updated

3 lines of code changed in 1 file:

westram 2010-03-17 14:42 Rev.: 6530


* how to show test-coverage

8 lines of code changed in 1 file:

westram 2010-03-17 14:38 Rev.: 6529


* clean '*.cov'
* do not print coverage info about files in /usr/include
* allow missing .gcov files (just warn)

15 lines of code changed in 3 files:

westram 2010-03-17 14:24 Rev.: 6528


- compile fix (NDEBUG+UNIT_TESTS)

4 lines of code changed in 1 file:

westram 2010-03-17 14:08 Rev.: 6526


- use gcov to print test-coverage information

296 lines of code changed in 12 files:

westram 2010-03-16 13:55 Rev.: 6525


- less verbose clean

1 lines of code changed in 1 file:

westram 2010-03-16 13:28 Rev.: 6524


* added more compile time assertions

19 lines of code changed in 5 files:

westram 2010-03-16 13:14 Rev.: 6523


* depends updated

7 lines of code changed in 2 files:

westram 2010-03-16 13:11 Rev.: 6522


* ported [6521] to trunk

38 lines of code changed in 3 files:

westram 2010-03-15 17:21 Rev.: 6520


- disabled DEBUG printout

1 lines of code changed in 1 file:

westram 2010-03-11 11:04 Rev.: 6518


* fixed buffer overflow in AISC (when sent string is longer than AISC_MAX_STRING_LEN, which is 1024).

27 lines of code changed in 1 file:

westram 2010-03-11 10:38 Rev.: 6517


* added GBS_chrncat()

9 lines of code changed in 2 files:

westram 2010-03-11 10:37 Rev.: 6516


* fixed compile error (assert)
* fixed includes
* added include wrappers
* renamed functions "overloaded" by defines

260 lines of code changed in 12 files:

westram 2010-03-10 17:22 Rev.: 6515


[static checker]
* var visability

5 lines of code changed in 1 file:

westram 2010-03-10 17:22 Rev.: 6514


[static checker]
* assertion

4 lines of code changed in 1 file:

westram 2010-03-10 15:27 Rev.: 6513


[static checker]
* fixed
- mem leaks
- potential NULL derefs
- error handling

463 lines of code changed in 13 files:

westram 2010-03-10 13:19 Rev.: 6512


* ORF display
- draw two 60-degree-arcs instead of one 180-degree-arc
- fixed Amino-Name coloring

91 lines of code changed in 4 files:

westram 2010-03-10 11:22 Rev.: 6511


[static checker]
* ED4_AA_sequence_terminal
- made public members private
- fixed completely broken SET_aaSequence_pointer()
* removed strange PV_ERROR, using GB_ERROR instead
* fixed error handling and leaks in
- PV_WriteTranslatedSequenceToDB()
- TranslateGeneToAminoAcidSequence()

184 lines of code changed in 3 files:

westram 2010-03-10 11:20 Rev.: 6510


- corrected hash size

3 lines of code changed in 1 file:

westram 2010-03-09 17:23 Rev.: 6509


[static checker]
* fixed error handling for several functions
* use flag for user aborts instead of interpreting content of error message
* use DI_MATRIX::ROOT to access static member (instead of using an instance variable)
* fixed delete/free mismatches
* stuffed leak

194 lines of code changed in 7 files:

westram 2010-03-09 17:13 Rev.: 6508


* added 2nd flavor of aw_message_if()

3 lines of code changed in 1 file:

westram 2010-03-09 14:37 Rev.: 6507


[static check]
* added assertion

2 lines of code changed in 1 file:

westram 2010-03-09 14:37 Rev.: 6506


[static check]
* stuffed one leak in test-code
* excluded test-code from compilation using define
* made some functions static

16 lines of code changed in 2 files:

westram 2010-03-06 12:23 Rev.: 6505


- compile fix

1 lines of code changed in 1 file:

westram 2010-03-06 12:21 Rev.: 6504


[static check]
- some leaks stuffed

39 lines of code changed in 1 file:

westram 2010-03-06 11:52 Rev.: 6503


[static check]
- some fixes / assertions added

73 lines of code changed in 4 files:

westram 2010-03-06 11:24 Rev.: 6502


[static check]
- some fixes / assertions added

73 lines of code changed in 5 files:

westram 2010-03-05 15:38 Rev.: 6501


- redefined ATTRIBUTED() as STATIC_ATTRIBUTED and INLINE_ATTRIBUTED

39 lines of code changed in 9 files:

westram 2010-03-05 15:24 Rev.: 6500


- hm.. ATTRIBUTED works only for static functions (should be redefined as STATIC_ATTRIBUTED)

3 lines of code changed in 2 files:

westram 2010-03-05 15:14 Rev.: 6499


[static check]
- some fixes / assertions added

59 lines of code changed in 5 files:

westram 2010-03-05 14:35 Rev.: 6498


- ensured that "interpreter status" is forwarded properly

43 lines of code changed in 1 file:

westram 2010-03-05 14:33 Rev.: 6497


- missing dependency

1 lines of code changed in 1 file:

westram 2010-03-05 14:31 Rev.: 6496


- do not generate prototypes for ATTRIBUTED() function decls if -G is present

6 lines of code changed in 1 file:

westram 2010-03-05 13:50 Rev.: 6495


- use standard functions

14 lines of code changed in 1 file:

westram 2010-03-05 13:43 Rev.: 6494


- fix potential problems reported by static code-checker

310 lines of code changed in 5 files:

westram 2010-03-04 15:29 Rev.: 6493


- added unit tests for gbcm_get_m_id(). also see [6486]

76 lines of code changed in 1 file:

westram 2010-03-04 13:53 Rev.: 6492


- added VALGRIND=2 (use if test traps unexpectedly)

4 lines of code changed in 1 file:

westram 2010-03-04 13:52 Rev.: 6491


- failed to parse test locations

3 lines of code changed in 1 file:

westram 2010-03-03 14:00 Rev.: 6490


* moved a few types to arbdb_base.h
* only use arbdb_base.h or arbdb.h where possible
* global included cleanup
* added MBI headers to many files
* moved SQ_ambiguities.SQ_count_ambiguities() to separate object

1012 lines of code changed in 177 files:

westram 2010-03-02 11:35 Rev.: 6489


- mention usage of environment variable PRINTER

5 lines of code changed in 1 file:

February 2010 »

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