December 2021 Commit Log

Number of Commits:

11

Number of Active Developers:

1

westram 2021-12-20 17:44 #11 Rev.: 18883

* reintegrates 'nds' into 'trunk'
- fixes #841
* adds: log:branches/nds@18843:18882

686 lines of code changed in 26 files:

• arb_CHANGES.txt (+9 -2)
• DIST: DI_save_matr.cxx (+10 -11)
• HELP_SOURCE/source: props_nds.hlp (new), tr_export.hlp (+31 -18)
• NTREE: NT_extern.cxx (+81 -14), ad_trees.cxx (+58 -49)
• PARSIMONY: PARS_main.cxx (+1 -1)
• SL/NDS: Makefile (+1), nds.cxx (+274 -190), nds.h (+9 -8)
• SL/TREEDISP: TreeDisplay.cxx (+3 -3), irstree_display.cxx (+1 -1)
• SL/TREE_WRITE: TreeLabeler.h (+5 -2), TreeWrite.cxx (+115 -84), TreeWrite.h (+9 -7)
• TOOLS: arb_consensus_tree.cxx (+3 -3), arb_export_newick.cxx (+25 -21)
• UNIT_TESTER/run/display: nds.arb (+6 -4)
• UNIT_TESTER/run/distance: matrix.dna.readable.expected (+6 -6), matrix.pro.readable.expected (new), matrix.rna.readable.expected (+7 -7)
• lib/pictures: tree_export.fig (+24 -19)

westram 2021-12-19 18:24 #10 Rev.: 18876

* target 'oneunit' fails after 'clean' (still fails)
- fix a few problems with .sym files.

6 lines of code changed in 1 file:

• UNIT_TESTER: Makefile.suite (+6 -4)

westram 2021-12-19 18:14 #9 Rev.: 18875

* ARB_GDE depends on 'menus' (fix failing 'rebuild'; broken by [18866])

1 lines of code changed in 1 file:

• Makefile (+1 -1)

westram 2021-12-17 16:04 #8 Rev.: 18866

* fix failing unit-test (was broken by [18864])
* [hack] force rebuild+exec of unittest after menu changes.
* explain motivation for menu unittest.

11 lines of code changed in 2 files:

• ARB_GDE: GDE_ParseMenu.cxx (+8 -3), Makefile (+3)

westram 2021-12-17 15:35 #7 Rev.: 18865

* add minimal documentation for
- probcons and
- muscle.

46 lines of code changed in 5 files:

• GDE/MUSCLE: README (new 7)
• GDE/PROBCONS: README (new 8)
• GDEHELP/HELP_WRITTEN: ProbCons.help (new 16), muscle.help (new 13)
• GDEHELP/MENUS: align.menu (+2)

westram 2021-12-17 15:34 #6 Rev.: 18864

* remove 'Start a slave ARB on a foreign host' (obsolete).

0 lines of code changed in 3 files:

• GDEHELP: ARB_GDEmenus.source (-5)
• GDEHELP/MENUS: start_arb.menu (del)
• NTREE: NT_extern.cxx (-5)

westram 2021-12-17 15:32 #5 Rev.: 18863

* document 'Import fields from calc-sheet'.
* link to 'Export fields (to calc-sheet using NDS)'.
* add another pointer, where to add helpfiles for GDE menus.

48 lines of code changed in 5 files:

• GDEHELP: Makefile.helpfiles (+3 -1)
• GDEHELP/HELP_WRITTEN: import_calc.help (new 42)
• GDEHELP/MENUS: import.menu (+1)
• HELP_SOURCE/source: arb_export_nds.hlp (+2)

westram 2021-12-17 15:30 #4 Rev.: 18862

* increase x-size of dependency graphs.

3 lines of code changed in 1 file:

• SOURCE_TOOLS: needed_libs.pl (+3 -2)

westram 2021-12-15 19:13 #3 Rev.: 18852

* assert SRT is set in update.
* remove useless cast.

2 lines of code changed in 1 file:

• WINDOW: AW_awar.cxx (+2 -1)

westram 2021-12-15 19:11 #2 Rev.: 18851

* add deadlock warning to callback loop in commit_transaction.

10 lines of code changed in 1 file:

• ARBDB: arbdb.cxx (+10 -1)

westram 2021-12-15 19:07 #1 Rev.: 18850

* fixed display of mapped AWARs
- crashed when they are mapped to different database (e.g. in case of NDS awars which get mapped to loaded database)

16 lines of code changed in 1 file:

• AWT: AWT_db_browser.cxx (+16 -4)

November 2021 »