-
westram
2016-08-30 14:01
#18
Rev.: 15258
-
41 lines of code changed in 4 files:
-
WINDOW:
AW_font_group.cxx (+9 -27),
aw_common.hxx (+3 -3),
aw_font_group.hxx (+15 -16),
aw_font_limits.hxx (+14 -8)
-
westram
2016-08-30 13:34
#17
Rev.: 15257
-
6 lines of code changed in 2 files:
-
WINDOW:
aw_common.hxx (+1 -1),
aw_font_limits.hxx (+5 -11)
-
westram
2016-08-30 13:26
#16
Rev.: 15256
-
20 lines of code changed in 11 files:
-
DIST:
DI_view_matrix.cxx (+2 -2)
-
EDIT4:
ED4_no_class.cxx (+1 -1)
-
PHYLO:
PH_display.cxx (+3 -3)
-
PROBE_DESIGN:
SaiProbeVisualization.cxx (+1 -1)
-
SL/TREEDISP:
TreeDisplay.cxx (+2 -2),
TreeDisplay.hxx (+1 -1)
-
WINDOW:
AW_print.cxx (+1 -1),
AW_xfont.cxx (-1),
aw_common.hxx (-1),
aw_font_group.hxx (+1 -1),
aw_font_limits.hxx (+8 -11)
-
westram
2016-08-30 11:30
#15
Rev.: 15254
-
96 lines of code changed in 15 files:
-
AWT:
Makefile (+2)
-
DIST:
Makefile (+1)
-
EDIT4:
Makefile (+26)
-
GENOM:
Makefile (+2)
-
GL/glAW:
Makefile (+1)
-
MULTI_PROBE:
Makefile (+2)
-
NTREE:
Makefile (+9)
-
PARSIMONY:
Makefile (+6)
-
PHYLO:
Makefile (+3)
-
PROBE_DESIGN:
Makefile (+2)
-
RNA3D:
Makefile (+6)
-
SECEDIT:
Makefile (+11)
-
SL/AW_HELIX:
Makefile (+1)
-
SL/TREEDISP:
Makefile (+3)
-
WINDOW:
Makefile (+21)
-
westram
2016-08-30 11:29
#14
Rev.: 15253
-
65 lines of code changed in 3 files:
-
SOURCE_TOOLS:
generate_all_links.sh (+1)
-
WINDOW:
aw_device.hxx (+3 -46),
aw_font_limits.hxx (new 61)
-
westram
2016-08-30 10:26
#13
Rev.: 15251
-
37 lines of code changed in 5 files:
-
WINDOW:
AW_device.cxx (+13 -13),
AW_device_click.cxx (+4 -4),
AW_device_size.cxx (+5 -5),
AW_font_group.cxx (+2),
aw_font_group.hxx (+13 -4)
-
westram
2016-08-25 13:16
#12
Rev.: 15237
-
34 lines of code changed in 1 file:
-
WINDOW:
AW_preset.cxx (+34 -34)
-
westram
2016-08-25 12:38
#11
Rev.: 15235
-
61 lines of code changed in 3 files:
-
WINDOW:
AW_preset.cxx (+54 -44),
AW_xfont.cxx (+6 -1),
aw_xfont.hxx (+1 -1)
-
westram
2016-08-25 10:47
#10
Rev.: 15234
-
14 lines of code changed in 2 files:
-
WINDOW:
AW_xfont.cxx (+13 -1),
aw_device.hxx (+1 -1)
-
westram
2016-08-24 11:42
#9
Rev.: 15230
-
7 lines of code changed in 6 files:
-
EDIT4:
ED4_block.cxx (+5 -20),
ED4_main.cxx (-2),
ED4_terminal.cxx (-35),
ed4_class.hxx (-2)
-
PROBE_DESIGN:
probe_design.cxx (+2)
-
WINDOW:
aw_awar_defs.hxx (-1)
-
westram
2016-08-23 09:21
#8
Rev.: 15228
-
9 lines of code changed in 1 file:
-
westram
2016-08-22 14:34
#7
Rev.: 15223
-
1832 lines of code changed in 30 files:
-
EDIT4:
ED4_ProteinViewer.cxx (+37 -38),
ED4_base.cxx (+242 -251),
ED4_colStat.cxx (+23 -22),
ED4_consensus.cxx (+4 -7),
ED4_container.cxx (new 377),
ED4_cursor.cxx (+32 -46),
ED4_dots.cxx (+1 -1),
ED4_dump.cxx (+15 -11),
ED4_edit_string.cxx (+5 -7),
ED4_main.cxx (+8 -8),
ED4_manager.cxx (+263 -308),
ED4_members.cxx (del),
ED4_nds.cxx (+6 -12),
ED4_no_class.cxx (+138 -79),
ED4_objspec.cxx (+31 -31),
ED4_plugins.cxx (+1 -1),
ED4_root.cxx (+88 -98),
ED4_search.cxx (+1 -1),
ED4_seq_colors.cxx (+6 -6),
ED4_terminal.cxx (+139 -121),
ED4_text_terminals.cxx (+5 -5),
ED4_window.cxx (+4 -5),
EDB_root_bact.cxx (+90 -246),
Makefile (+38 -38),
ed4_awars.hxx (-1),
ed4_class.hxx (+186 -160),
ed4_defs.hxx (+62 -50),
ed4_nds.hxx (+1 -1)
-
TEMPLATES:
downcast.h (+8 -1)
-
lib/pictures/edit4:
nds.fig (+21 -15)
-
westram
2016-08-18 08:50
#6
Rev.: 15202
-
10 lines of code changed in 2 files:
-
CORE:
arb_assert.h (+9 -1)
-
SL/TREEDISP:
TreeDisplay.cxx (+1 -1)
-
westram
2016-08-17 19:39
#5
Rev.: 15198
-
263 lines of code changed in 35 files:
-
AISC:
aisc_commands.c (+5 -5)
-
AWT:
AWT_input_mask.cxx (+9 -9),
awt_canvas.hxx (+1 -1),
awt_input_mask_internal.hxx (+39 -39)
-
CONVERTALN:
embl.h (+1 -1),
genbank.h (+1 -1),
input_format.h (+2 -2),
macke.h (+1 -1)
-
CORE:
arb_strarray.h (+4 -4)
-
DIST:
DI_clusters.cxx (+1 -1),
di_clustertree.hxx (+1 -1)
-
EDIT4:
ED4_plugins.cxx (+1 -1),
ed4_class.hxx (+78 -78)
-
GENOM:
EXP_main.cxx (+5 -5),
GEN_graphic.hxx (+3 -3),
GEN_map.cxx (+5 -5)
-
GENOM_IMPORT:
Importer.h (+8 -8)
-
NTREE:
NT_extern.cxx (+5 -5)
-
PARSIMONY:
ap_tree_nlen.hxx (+1 -1)
-
PERLTOOLS:
arb_proto_2_xsub.cxx (+2 -2)
-
PROBE_SET:
ps_bitmap.hxx (+26 -26),
ps_bitset.hxx (+5 -5),
ps_database.hxx (+1 -1)
-
RNA3D:
RNA3D_Graphics.hxx (+1 -1)
-
SECEDIT:
SEC_graphic.hxx (+2 -2),
SEC_root.hxx (+6 -6)
-
SEQ_QUALITY:
SQ_GroupData.h (+1 -1)
-
SL/AP_TREE:
AP_Tree.hxx (+1 -1)
-
SL/LOCATION:
Location.cxx (+15 -15)
-
SL/MACROS:
trackers.hxx (+1 -1)
-
SL/SEQUENCE:
AP_seq_protein.hxx (+1 -1)
-
SL/TREEDISP:
TreeDisplay.cxx (+7 -7)
-
UNIT_TESTER:
test_unit.h (+3 -3)
-
WINDOW:
aw_select.hxx (+1 -1)
-
XML:
xml.hxx (+19 -19)
-
westram
2016-08-11 10:05
#4
Rev.: 15176
-
2045 lines of code changed in 317 files:
-
AISC:
aisc_interpreter.h (+12 -2)
-
AISC_MKPTPS:
mkptypes.cxx (+4 -4)
-
ARBDB:
Makefile (+41),
adChangeKey.cxx (+1 -1),
adGene.cxx (+3 -3),
adRevCompl.cxx (+4 -9),
adTest.cxx (+2 -2),
ad_config.cxx (+1 -1),
ad_core.cxx (+3 -11),
ad_load.cxx (+5 -5),
ad_prot.h (-5),
ad_remote.h (+2 -2),
ad_save_load.cxx (+10 -10),
adali.cxx (+3 -3),
adcache.cxx (+3 -3),
adcomm.cxx (+6 -8),
adcompr.cxx (+3 -3),
adfile.cxx (+8 -7),
adhash.cxx (+18 -24),
adindex.cxx (+8 -6),
aditem.cxx (+3 -3),
adlang1.cxx (+29 -39),
admalloc.cxx (+5 -57),
admap.cxx (+39 -57),
admatch.cxx (+10 -10),
admath.cxx (+4 -4),
adname.cxx (+1 -1),
adoptimize.cxx (+6 -7),
adperl.cxx (+1 -1),
adquery.cxx (+15 -15),
adseqcompr.cxx (+23 -21),
adsocket.cxx (+32 -32),
adstring.cxx (+18 -18),
adsystem.cxx (+5 -7),
adtcp.cxx (+11 -20),
adtools.cxx (+11 -11),
adtree.cxx (+6 -6),
arbdb.cxx (+37 -33),
arbdb.h (+3),
gb_memory.h (+3 -5)
-
ARB_GDE:
GDE.cxx (+1 -1),
GDE_FileIO.cxx (+7 -52),
GDE_Genbank.cxx (+15 -27),
GDE_HGLfile.cxx (+3 -4),
GDE_ParseMenu.cxx (+36 -55),
GDE_arbdb_io.cxx (+15 -17),
GDE_event.cxx (+10 -10),
GDE_proto.h (+1 -3),
Makefile (+7)
-
AWT:
AWT_asciiprint.cxx (+3 -3),
AWT_canio.cxx (+3 -5),
AWT_canvas.cxx (+2 -2),
AWT_config_manager.cxx (+1 -1),
AWT_db_browser.cxx (+4 -4),
AWT_input_mask.cxx (+14 -14),
AWT_sel_boxes.cxx (+8 -10),
AWT_www.cxx (+1 -1),
Makefile (+11)
-
AWTC:
AWTC_submission.cxx (+2 -2),
Makefile (+2)
-
AWTI:
AWTI_export.cxx (+1 -1),
AWTI_import.cxx (+8 -11),
Makefile (+2)
-
CONSENSUS_TREE:
CT_mem.cxx (del),
CT_mem.hxx (del),
CT_ntree.cxx (+3 -3),
CT_part.hxx (+4 -4),
CT_rbtree.cxx (+4 -4),
Makefile (+12 -11)
-
CONVERTALN:
Makefile (+33),
date.cxx (+1 -1),
embl.cxx (+5 -5),
embl.h (+12 -9),
genbank.cxx (+3 -3),
genbank.h (+10 -7),
global.h (+7 -5),
macke.cxx (+2 -2),
macke.h (+6 -3),
paup.cxx (+1 -1),
prototypes.h (-1),
reader.cxx (+1 -1),
seq.h (+16 -14),
util.cxx (+5 -22),
wrap.h (+1 -1)
-
CORE:
BufferedFileReader.cxx (+3 -1),
FileContent.cxx (+1 -2),
FileContent.h (+1 -1),
Makefile (+27 -1),
arb_cs.cxx (+4 -2),
arb_diff.cxx (+7 -7),
arb_file.cxx (+5 -6),
arb_match.cxx (+5 -6),
arb_mem.cxx (+100 -7),
arb_mem.h (+90 -6),
arb_misc.cxx (+3 -3),
arb_msg.cxx (+4 -5),
arb_pattern.cxx (+3 -2),
arb_strarray.cxx (+4 -7),
arb_strarray.h (+11 -10),
arb_strbuf.cxx (+3 -8),
arb_strbuf.h (+5 -2),
arb_string.cxx (+4 -59),
arb_string.h (+67 -14),
arb_zfile.cxx (+3 -3),
pos_range.cxx (+2 -2)
-
DBSERVER:
Makefile (+1),
db_server.cxx (+11 -11)
-
DIST:
DI_clusters.cxx (+2 -2),
DI_compress_matrix.cxx (+4 -4),
DI_foundclusters.cxx (+1 -1),
DI_matr.cxx (+10 -11),
DI_protdist.cxx (+11 -9),
DI_save_matr.cxx (+1 -1),
Makefile (+10),
di_matr.hxx (+1 -1)
-
EDIT4:
ED4_base.cxx (+2 -2),
ED4_block.cxx (+13 -9),
ED4_cursor.cxx (+3 -7),
ED4_dots.cxx (+1 -1),
ED4_edit_string.cxx (+4 -5),
ED4_main.cxx (+14 -18),
ED4_members.cxx (+21 -56),
ED4_no_class.cxx (+7 -7),
ED4_plugins.cxx (+2 -2),
ED4_protein_2nd_structure.cxx (+17 -17),
ED4_root.cxx (+2 -2),
ED4_search.cxx (+27 -39),
ED4_seq_colors.cxx (+2 -2),
ED4_terminal.cxx (+3 -3),
ED4_text_terminals.cxx (+7 -11),
ED4_visualizeSAI.cxx (+11 -15),
EDB_root_bact.cxx (+3 -4),
Makefile (+24),
ed4_class.hxx (+7 -7),
ed4_defs.hxx (-1)
-
GENOM:
EXP_interface.cxx (+2 -2),
GEN_gene.cxx (+1 -1),
GEN_interface.cxx (+6 -8),
GEN_map.cxx (+4 -4),
GEN_nds.cxx (+20 -23),
Makefile (+8)
-
GENOM_IMPORT:
Makefile (+3)
-
GL/glAW:
Makefile (+1)
-
HELP_SOURCE:
arb_help2xml.cxx (+1 -1)
-
MERGE:
MG_adapt_ali.cxx (+4 -4),
MG_checkfield.cxx (+2 -2),
MG_species.cxx (+7 -8),
MG_trees.cxx (+2 -2),
Makefile (+11)
-
MULTI_PROBE:
MP_Window.cxx (+10 -10),
MP_noclass.cxx (+11 -11),
MP_sonde.cxx (+2 -2),
MP_sondentopf.cxx (+1 -1),
Makefile (+18),
MultiProbe.hxx (+3 -3)
-
NALIGNER:
Makefile (+14),
ali_arbdb.cxx (+1 -1),
ali_global.cxx (+1 -1),
ali_pt.cxx (+1 -1),
ali_sequence.cxx (+4 -2)
-
NAMES:
Makefile (+1),
names.cxx (+42 -42)
-
NTREE:
AP_consensus.cxx (+20 -19),
AP_pos_var_pars.cxx (+12 -16),
ColumnStat_2_gnuplot.cxx (+4 -4),
Makefile (+25),
NT_concatenate.cxx (+14 -17),
NT_dbrepair.cxx (+1 -1),
NT_edconf.cxx (+15 -17),
NT_extern.cxx (+2 -2),
NT_main.cxx (+5 -5),
NT_sort.cxx (+3 -3),
NT_trackAliChanges.cxx (+1 -1),
NT_tree_cmp.cxx (+4 -4),
ad_ext.cxx (+1 -1),
ad_spec.cxx (+2 -2),
ad_transpro.cxx (+6 -6),
ad_trees.cxx (+6 -9)
-
PARSIMONY:
AP_tree_edge.cxx (+1 -1),
AP_tree_nlen.cxx (+4 -4),
Makefile (+6),
PARS_main.cxx (+1 -1)
-
PERLTOOLS:
Makefile (+1),
arb_proto_2_xsub.cxx (+4 -4)
-
PHYLO:
Makefile (+5),
PH_data.cxx (+2 -2),
PH_filt.cxx (+5 -7),
PH_main.cxx (+3 -3)
-
PRIMER_DESIGN:
Makefile (+4),
PRD_Item.cxx (+5 -2),
PRD_Pair.cxx (+5 -4)
-
PROBE:
Makefile (+11),
PT_buildtree.cxx (+2 -2),
PT_etc.cxx (+2 -2),
PT_family.cxx (+2 -2),
PT_findEx.cxx (+1 -1),
PT_io.cxx (+4 -4),
PT_main.cxx (+3 -3),
PT_match.cxx (+8 -9),
PT_mem.h (+3 -4),
PT_new_design.cxx (+4 -4),
PT_prefixIter.h (+3 -3),
PT_prefixtree.cxx (+1 -1)
-
PROBE_COM:
PT_extern.c (+4 -4)
-
PROBE_DESIGN:
Makefile (+4),
SaiProbeVisualization.cxx (+4 -4),
probe_design.cxx (+14 -17),
probe_match_parser.cxx (+7 -10)
-
PROBE_SET:
Makefile (+3)
-
RNA3D:
Makefile (+7)
-
RNACMA:
Makefile (+3)
-
SECEDIT:
Makefile (+8),
SEC_abspos.cxx (+9 -7),
SEC_bonddef.cxx (+1 -1),
SEC_db.cxx (+1 -1),
SEC_graphic.cxx (+1 -1),
SEC_helix.cxx (+3 -3),
SEC_paint.cxx (+1 -1)
-
SEQ_QUALITY:
Makefile (+3),
SQ_functions.cxx (+1 -1)
-
SERVERCNTRL:
Makefile (+1),
servercntrl.cxx (+17 -18)
-
SL/ALILINK:
Makefile (+1)
-
SL/AP_TREE:
Makefile (+1)
-
SL/ARB_TREE:
ARB_Tree.hxx (+1 -1),
Makefile (+1)
-
SL/AW_HELIX:
AW_helix.cxx (+1 -1),
Makefile (+1)
-
SL/AW_NAME:
AW_rename.cxx (+3 -3),
Makefile (+2)
-
SL/CONSENSUS:
Makefile (new),
chartable.cxx (+8 -4)
-
SL/DB_QUERY:
Makefile (+1),
db_query.cxx (+3 -3)
-
SL/DB_SCANNER:
Makefile (+1)
-
SL/DB_UI:
Makefile (+2),
ui_species.cxx (+1 -1)
-
SL/FAST_ALIGNER:
ClustalV.cxx (+2 -2),
Makefile (+4),
fast_aligner.cxx (+3 -3),
seq_search.hxx (+5 -2)
-
SL/FILTER:
AP_filter.cxx (+4 -6),
Makefile (+1)
-
SL/GUI_ALIVIEW:
AWT_filter.cxx (+4 -3),
Makefile (+2)
-
SL/HELIX:
BI_helix.cxx (+4 -4),
Makefile (+2)
-
SL/INSDEL:
Makefile (+1),
insdel.cxx (+13 -13)
-
SL/ITEMS:
Makefile (+4)
-
SL/ITEM_SHADER:
Makefile (new)
-
SL/LOCATION:
Makefile (+1)
-
SL/MACROS:
Makefile (+4),
recmac.cxx (+2 -2),
trackers.hxx (+4 -1)
-
SL/MATRIX:
AP_matrix.cxx (+4 -4),
AP_matrix.hxx (+3 -3),
Makefile (+1)
-
SL/NDS:
Makefile (+1),
nds.cxx (+1 -1)
-
SL/NEIGHBOURJOIN:
Makefile (+1),
NJ.cxx (+2 -2)
-
SL/PRONUC:
AP_codon_table.cxx (+1 -1),
AP_pro_a_nucs.cxx (+4 -6),
Makefile (+2)
-
SL/PTCLEAN:
Makefile (+1)
-
SL/REFENTRIES:
Makefile (+1),
refentries.h (+5 -2)
-
SL/REGEXPR:
Makefile (+1),
RegExpr.cxx (+4 -1)
-
SL/SEQIO:
Makefile (+2),
seq_export.cxx (+1 -1)
-
SL/SEQUENCE:
AP_seq_dna.cxx (+3 -3),
Makefile (+3)
-
SL/TRANSLATE:
Makefile (+1)
-
SL/TREEDISP:
Makefile (+3)
-
SL/TREE_ADMIN:
Makefile (+1)
-
SL/TREE_READ:
Makefile (+2)
-
SL/TREE_WRITE:
Makefile (+1),
TreeWrite.cxx (+2 -2)
-
SOURCE_TOOLS:
arb_create_patch.sh (+7 -4)
-
SOURCE_TOOLS/COMPILE_COMPAT:
Makefile (+2)
-
STAT:
Makefile (+3),
ST_ml.cxx (+5 -5)
-
TEMPLATES:
ChecksumCollector.h (+1 -1),
arb_backtrace.h (+27 -9),
config_parser.h (+2 -2),
dupstr.h (+1 -9),
smartptr.h (+1 -1)
-
TOOLS:
Makefile (+18),
arb_consensus_tree.cxx (+2 -2),
arb_dnarates.cxx (+2 -2),
arb_export_rates.cxx (+1 -1),
arb_message.cxx (+1 -1),
arb_notify.cxx (+1 -1),
arb_primer.cxx (+7 -7),
arb_probe.cxx (+3 -3),
arb_read_tree.cxx (+5 -9),
arb_test.cxx (+1 -1)
-
UNIT_TESTER:
Makefile (+1)
-
WETC:
Makefile (+1)
-
WINDOW:
AW_at.cxx (+2 -2),
AW_device.cxx (+2 -3),
AW_help.cxx (+3 -3),
AW_preset.cxx (+1 -1),
AW_question.cxx (+1 -1),
AW_root.cxx (+1 -1),
AW_select.cxx (+2 -2),
AW_status.cxx (+5 -7),
AW_window.cxx (+13 -17),
AW_xfig.cxx (+1 -1),
AW_xfont.cxx (+4 -4),
AW_xkey.cxx (+2 -2),
Makefile (+30),
aw_scalar.hxx (+5 -2)
-
westram
2016-08-03 17:17
#3
Rev.: 15133
-
1 lines of code changed in 1 file:
-
westram
2016-08-03 15:43
#2
Rev.: 15132
-
15 lines of code changed in 3 files:
-
SL/AP_TREE:
AP_TreeShader.hxx (+1 -1)
-
SL/TREEDISP:
TreeCallbacks.cxx (+4 -1),
TreeDisplay.cxx (+10 -2)
-
westram
2016-08-03 14:42
#1
Rev.: 15131
-
14 lines of code changed in 2 files:
-
ARBDB:
adname.cxx (+4 -1),
adtree.cxx (+10 -8)