September 2020 Commit Log

Number of Commits:
11
Number of Active Developers:
1
westram 2020-09-23 12:48 Rev.: 18481


* set "TAB separated" as default NDS column delimiter.
- rename AWAR to reset properties in userland.

4 lines of code changed in 1 file:

westram 2020-09-23 12:46 Rev.: 18480


* mention problems with 'Space padded'-column-style in documentation.

8 lines of code changed in 1 file:

westram 2020-09-23 12:42 Rev.: 18479


* while saving space-padded CSV file: do not print leading space.
* improve some comments.

8 lines of code changed in 1 file:

westram 2020-09-23 12:39 Rev.: 18478


* mark other scripts that might need "eval vs. die-catcher" fixes.

3 lines of code changed in 3 files:

westram 2020-09-23 12:37 Rev.: 18477


* do not abort if species lacks index-field.
* count + report ambiguous hits.

8 lines of code changed in 1 file:

westram 2020-09-23 12:34 Rev.: 18476


* provide perl function {{{ARB::set_inGlobalEvalState}}}.
* use it to inform {{{ARB.pm}}} that {{{import_from_table.pl}}} uses eval (and does not like to get aborted).

21 lines of code changed in 2 files:

westram 2020-09-04 09:33 Rev.: 18475


* DRY base counter test (and empty data warning).

18 lines of code changed in 2 files:

westram 2020-09-04 09:32 Rev.: 18474


* extra warning if sequence data of genome flat file is empty (EMBL+genebank).

10 lines of code changed in 1 file:

westram 2020-09-04 09:31 Rev.: 18473


* support genebank entry "DBLINK"
- store in arb field 'db_xref'.

6 lines of code changed in 2 files:

westram 2020-09-04 09:28 Rev.: 18472


* do not append empty lines from wrapped tag content
- genebank only
- embl has strictly defined formatting of wrapped content

4 lines of code changed in 1 file:

westram 2020-09-04 09:26 Rev.: 18471


* accept uncommon indentation occurring in genebank flat files
- remove assertion failures for wrapped lines starting behind column 12.

3 lines of code changed in 1 file:

August 2020 »

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