/trunk Developers: yadhu

Login name:
yadhu
Total Commits:
881 (1.9%)
Lines of Code:
78,913 (3.2%)
Most Recent Commit:
2007-07-31 13:50
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Activity in Directories

Directory Changes Lines of Code Lines per Change
Totals 881 (100.0%) 78913 (100.0%) 89.5
RNA3D/Attic/data/ 5 (0.6%) 34807 (44.1%) 6961.4
RNA3D/ 230 (26.1%) 9015 (11.4%) 39.1
EDIT4/ 158 (17.9%) 5944 (7.5%) 37.6
lib/pixmaps/ 85 (9.6%) 5693 (7.2%) 66.9
lib/rna3d/ 9 (1.0%) 4719 (6.0%) 524.3
lib/pictures/ 50 (5.7%) 3281 (4.2%) 65.6
NTREE/ 54 (6.1%) 3232 (4.1%) 59.8
SECEDIT/ 72 (8.2%) 3175 (4.0%) 44.0
WINDOW/ 47 (5.3%) 2411 (3.1%) 51.2
AWT/ 23 (2.6%) 1507 (1.9%) 65.5
PROBE_DESIGN/ 20 (2.3%) 1034 (1.3%) 51.7
RNA3D/Attic/images/ 22 (2.5%) 902 (1.1%) 41.0
RNA3D/Attic/OPENGL/ 16 (1.8%) 885 (1.1%) 55.3
XML_IMPORT/IMP_TREE/ 10 (1.1%) 656 (0.8%) 65.6
HELP_SOURCE/oldhelp/ 15 (1.7%) 440 (0.6%) 29.3
lib/pixmaps/edit/ 16 (1.8%) 398 (0.5%) 24.8
lib/pictures/edit4/ 5 (0.6%) 240 (0.3%) 48.0
GDE/TREEPUZZLE/ 1 (0.1%) 97 (0.1%) 97.0
GDE/SUPPORT/ 1 (0.1%) 77 (0.1%) 77.0
/ 17 (1.9%) 74 (0.1%) 4.3
XML_IMPORT/ 1 (0.1%) 51 (0.1%) 51.0
GDE/MOLPHY/ 1 (0.1%) 39 (0.0%) 39.0
MERGE/ 2 (0.2%) 34 (0.0%) 17.0
GDE/PHYLIP/ 1 (0.1%) 31 (0.0%) 31.0
lib/pictures/awt/ 1 (0.1%) 29 (0.0%) 29.0
GDE/CORE/ 1 (0.1%) 28 (0.0%) 28.0
lib/pixmaps/print/ 1 (0.1%) 25 (0.0%) 25.0
GDE/CLUSTALW/ 1 (0.1%) 21 (0.0%) 21.0
GDE/CLUSTAL/ 1 (0.1%) 13 (0.0%) 13.0
GDE/LOOPTOOL/ 1 (0.1%) 12 (0.0%) 12.0
GDE/HGL_SRC/ 1 (0.1%) 10 (0.0%) 10.0
lib/arb_default/ 2 (0.2%) 7 (0.0%) 3.5
ARBDB/ 2 (0.2%) 7 (0.0%) 3.5
PHYLO/ 1 (0.1%) 4 (0.0%) 4.0
PARSIMONY/ 1 (0.1%) 4 (0.0%) 4.0
SOURCE_TOOLS/ 1 (0.1%) 3 (0.0%) 3.0
GDE/ 1 (0.1%) 3 (0.0%) 3.0
lib/import/ 2 (0.2%) 2 (0.0%) 1.0
GDE/FASTDNAML/ 1 (0.1%) 2 (0.0%) 2.0
SH/ 1 (0.1%) 1 (0.0%) 1.0
lib/rna3d/images/ 1 (0.1%) 0 (0.0%) 0.0

Activity of yadhu

Most Recent Commits

yadhu 2007-07-31 13:50 Rev.: 4742

removed AWUSE()

19 lines of code changed in 5 files:

  • RNA3D: RNA3D_Graphics.cxx (+4 -11), RNA3D_Interface.cxx (+11 -22), RNA3D_OpenGLGraphics.cxx (+2 -4), RNA3D_Renderer.cxx (+1 -2), RNA3D_StructureData.cxx (+1 -2)
yadhu 2007-07-30 13:15 Rev.: 4741

Removed unnessasary warnings!

18 lines of code changed in 4 files:

  • RNA3D: RNA3D_Interface.cxx (+12 -3), RNA3D_OpenGLEngine.cxx (+2 -1), RNA3D_OpenGLGraphics.cxx (+2), RNA3D_Renderer.cxx (+2 -1)
yadhu 2007-03-15 17:17 Rev.: 4387

Added warnings for testing!

2 lines of code changed in 1 file:

  • EDIT4: ED4_root.cxx (+2 -2)
yadhu 2007-03-15 17:10 Rev.: 4386

Added warnings for testing!

6 lines of code changed in 1 file:

  • EDIT4: ED4_root.cxx (+6)
yadhu 2007-03-15 17:04 Rev.: 4385

Changes to Background Color Tuning!
Increased the color modification to 50. Now works with the darker and lighter background as well.
Changed the 3-5' button.

157 lines of code changed in 6 files:

  • AWT: AWT_query_and_functions.cxx (+1 -1)
  • EDIT4: ED4_root.cxx (+2 -2)
  • WINDOW: AW_button.cxx (+49 -22), AW_window.cxx (+72 -4), aw_window.hxx (+9)
  • lib/pixmaps/edit: 3to5.xpm (+24 -24)
yadhu 2007-01-04 14:47 Rev.: 4265

Changes to ProtView Module
1. Added REFRESH button to ProtView Dialog in order to refresh the translated display while inserting and deleting columns in the editor.
2. Added new Refresh, close and help icons for button drawing.

155 lines of code changed in 7 files:

  • EDIT4: ED4_ProteinViewer.cxx (+14 -126)
  • lib/pictures: proteinViewer.fig (+2 -1)
  • lib/pixmaps: close_text.xpm (new 27), help_text.xpm (new 28), refresh.xpm (+26 -41), refreshText.xpm (new 32), refresh_text.xpm (new 26)
yadhu 2006-12-29 15:23 Rev.: 4264

Changes to Interface
1. Added New Icons to use in ARB_NT, ARB_EDIT4, Search&Query windows.
2. Some changes to ARB_NT and ARB_EDIT4 layouts.
3. Updated Icons used in RNA3D application.
4. Fixed help buttons and menus.

1419 lines of code changed in 27 files:

  • AWT: AWT_query_and_functions.cxx (+6 -7)
  • EDIT4: ED4_root.cxx (+84 -30)
  • NTREE: NT_extern.cxx (+252 -76)
  • lib/pictures/edit4: editmenu.fig (+44 -31)
  • lib/pixmaps: dendro.xpm (new 33), dendroIrs.xpm (new 33), edit.xpm (new 30), equal.xpm (new 35), less.xpm (new 21), more.xpm (new), notEqual.xpm (new 96), protect.xpm (new 70), quit.xpm (+19 -20), radial.xpm (new 29), redo.xpm (new 45), saveAs.xpm (new 242), search.xpm (new 50), separator.xpm (new 61), undo.xpm (new 45)
  • lib/pixmaps/edit: 3to5.xpm (new 23), 5to3.xpm (new 23), align.xpm (new 26), editseq.xpm (new 26), insert.xpm (new 25), replace.xpm (new 25), rna3d.xpm (+38 -41), secedit.xpm (new 38)
yadhu 2006-12-29 15:20 Rev.: 4263

Changes to Interface
1. Changed the background of the buttons and toggles so that it gives a smooth look for all the buttons in the application.
2. Added new parameter for create_button function so that colored buttons are drawn with the color passed not with the default background.

106 lines of code changed in 4 files:

  • WINDOW: AW_button.cxx (+33 -5), AW_preset.cxx (+4 -4), AW_window.cxx (+67 -7), aw_window.hxx (+2 -1)
yadhu 2006-12-18 19:17 Rev.: 4259

New ARB Interface
1. Added New ARB Icons.
2. Created ICONIC interface for
a) Main Tree Window
b) EDitor Window
c) RNA3D Window
3. Redesigned Search Database window with new interace using iconic buttons.
4. Redesigned Species information window
5. Added CITATION (information) button to ARB Main window.

76 lines of code changed in 2 files:

  • EDIT4: ED4_ProteinViewer.cxx (+3 -2), ED4_root.cxx (+73 -32)
yadhu 2006-12-18 17:37 Rev.: 4258

1.Added ARB icons for new ARB interface
2.Updated certain xfig files to accomodate new layout changes

960 lines of code changed in 19 files:

  • lib/pictures: proteinViewer.fig (+72 -72)
  • lib/pixmaps: basesText.xpm (+127 -122), check.xpm (+36 -187), close.xpm (+24 -203), closeText.xpm (+34 -207), colorMaps.xpm (+34 -35), colors.xpm (+37 -53), helixText.xpm (+34 -27), help.xpm (+28 -228), helpText.xpm (+33 -220), mapping.xpm (+28 -23), mask.xpm (+29 -25), molText.xpm (+31 -26), quit.xpm (+26 -219), refresh.xpm (+40 -24), save.xpm (+252 -85), uncheck.xpm (+25 -233), unmask.xpm (+30 -26)
  • lib/pixmaps/edit: rna3d.xpm (+40 -67)
yadhu 2006-12-07 13:19 Rev.: 4252

Added "set color" button to VisualizeSAI function.

22 lines of code changed in 3 files:

  • EDIT4: ED4_ProteinViewer.cxx (-8), ED4_visualizeSAI.cxx (+6)
  • lib/pictures: saiColorRange.fig (+16 -13)
yadhu 2006-12-06 18:06 Rev.: 4251

Changes to ProteinViewer Module
1. Added new display configuration to display reading frames.
2. Change of layout.
3. Added color settings to the protview dialog.
4. Added new xpm icons to use as buttons in protview module.

639 lines of code changed in 8 files:

  • EDIT4: ED4_ProteinViewer.cxx (+420 -111), ED4_cursor.cxx (+1), ED4_root.cxx (+3), ED4_text_terminals.cxx (+9 -6), ed4_ProteinViewer.hxx (+37 -5), ed4_class.hxx (+1)
  • lib/pictures: proteinViewer.fig (+133 -53)
  • lib/pixmaps: colorMaps.xpm (new 35)
yadhu 2006-11-28 15:49 Rev.: 4250

Changes Related to Protein Viewer Module
1. Added notes on the new aminoacid sequence / reading frame terminal class.
2. Fetches correct sequence colors according to the type of sequence. e.g, Aminoacid colors for protein alignment and nucleic acid colors for DNA/RNA alingment.
3. Code cosmetics.

32 lines of code changed in 3 files:

  • EDIT4: ED4_ProteinViewer.cxx (+19 -43), ED4_text_terminals.cxx (+5 -2), ed4_class.hxx (+8 -2)
yadhu 2006-10-26 14:08 Rev.: 4205

FIXES to ProtView module
1. Missing AA sequence terminals for newly loaded marked species - FIXED.
2. Missing AA sequence terminals for newly loaded current species - FIXED.
3. Crashing editor whilst moving newly loaded marked/current species - FIXED.

114 lines of code changed in 3 files:

  • EDIT4: ED4_ProteinViewer.cxx (+98 -52), ED4_cursor.cxx (+10), ed4_ProteinViewer.hxx (+6)
yadhu 2006-10-18 18:34 Rev.: 4199

BUGS, BUGS Everywhere....finding one by one....
Fixed editor crash when loading from pre-saved configuration settings of ProtView module!

4 lines of code changed in 1 file:

  • EDIT4: ED4_ProteinViewer.cxx (+4 -7)
yadhu 2006-10-18 13:25 Rev.: 4198

Fixed editor crash when using "display marked" option!

15 lines of code changed in 1 file:

  • EDIT4: ED4_ProteinViewer.cxx (+15 -12)
yadhu 2006-10-12 15:53 Rev.: 4195

Now Protein Viewer Module is accessible to all !
Happy ARBing !

1 lines of code changed in 1 file:

  • EDIT4: ED4_root.cxx (+1 -2)
yadhu 2006-09-26 17:31 Rev.: 4191

Changes to ProteinViewer Module:
1. Pops up query to user if the existing data found in the database.

31 lines of code changed in 2 files:

  • EDIT4: ED4_ProteinViewer.cxx (+23 -5), pv_header.hxx (+8 -6)
yadhu 2006-09-22 16:36 Rev.: 4190

uses new conf_save.xpm file for save configuration settings button.

2 lines of code changed in 2 files:

  • AWT: AWT_config_manager.cxx (+1 -1)
  • EDIT4: ED4_text_terminals.cxx (+1 -1)
yadhu 2006-09-22 16:35 Rev.: 4189

Added XPM file to be used in saving configuration settings.

38 lines of code changed in 1 file:

  • lib/pixmaps: conf_save.xpm (new 38)

(179 more)

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