Directory ARBDB/EXAMPLES/

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westram 2011-11-29 13:10 Rev.: 8252

- removed outdated example code

0 lines of code changed in 5 files:

• ARBDB/EXAMPLES: Makefile (del), all_spec_names.c (del), read_all_sequences.c (del), rnanames.c (del), write_all_species.c (del)

westram 2011-08-08 01:01 Rev.: 7811

merge from dev [7748] [7749] [7750]
* comments (C->C++ style)
* fixed umlauts in TREEGEN

1 lines of code changed in 1 file:

• ARBDB/EXAMPLES: write_all_species.c (+1 -1)

westram 2010-01-13 15:41 Rev.: 6347

Moved a lot of dead code to where it belongs: into the depths of SVN.
I didn't care much: If there was no obvious reason (e.g. some coment explaining why it's still there), it has been deleted

2 lines of code changed in 1 file:

• ARBDB/EXAMPLES: rnanames.c (+2 -6)

westram 2009-12-30 20:56 Rev.: 6318

* ARBDB
- compiles as C++ (no longer compiled as plain C)
- removed ARBDB2 + ARBDBS
- removed rotten C++-wrappers (ARBDBPP)
- generates special header for perl-interface to reduce dependencies (ad_p_prot.h)
* removed (ARBDB)
- gb_search_enum (merged with GB_TYPES)
* renamed (ARBDB)
- gbs_malloc_copy -> GB_memdup
- gb_search_types -> GB_SEARCH_TYPE + renamed enum-members
* tweaked perl interface
- code in ARBDB is now able to 'die' correctly (see GBP_croak_function)
- compiles as C++
- wrote generic functions for enum <-> string conversion (perl uses strings for enum values)
- added needed conversion functions
- removed handcoded xsubs (now all are generated by arb_proto_2_xsub - nevertheless, it's still possible to define xsubs manually)
- ARB::find and ARB::find_string (3rd parameter needs different values, only one file affected: PERL_SCRIPTS/GENOME/GI.pm - fixed)
- removed all functions using GBQUARK from perl interface
* perl interface generator (arb_proto_2_xsub)
- completely rewritten
- does automatic type conversion (expecting that the needed functions are defined in ARBDB/adperl.c)
* prototype generator
- compiles as C++
- switch -F accept's '!^' as beginning-of-name expression
* removed ARB_EDIT
- moved naligner interface code to EDIT4

3 lines of code changed in 3 files:

• ARBDB/EXAMPLES: Makefile (+1 -2), rnanames.c (+1 -1), write_all_species.c (+1 -1)

westram 2009-08-14 16:29 Rev.: 6141

* spellchecked all (phew)

3 lines of code changed in 2 files:

• ARBDB/EXAMPLES: rnanames.c (+2 -2), write_all_species.c (+1 -1)

westram 2008-06-06 14:23 Rev.: 5390

- TAB-Ex

67 lines of code changed in 4 files:

• ARBDB/EXAMPLES: all_spec_names.c (+24 -24), read_all_sequences.c (+29 -28), rnanames.c (+5 -5), write_all_species.c (+9 -9)

westram 2008-05-19 12:48 Rev.: 5309

- replaced calls to GB_find with new find-functions

6 lines of code changed in 2 files:

• ARBDB/EXAMPLES: all_spec_names.c (+2 -2), rnanames.c (+4 -2)

westram 2002-06-20 16:08 Rev.: 655

Mac OSX patches from Ben Hines

7 lines of code changed in 1 file:

• ARBDB/EXAMPLES: write_all_species.c (+7 -7)

oldcode 2000-11-23 11:41 Rev.: 2

Initial revision

67 lines of code changed in 5 files:

• ARBDB/EXAMPLES: Makefile (new 2), all_spec_names.c (new 24), read_all_sequences.c (new 28), rnanames.c (new 4), write_all_species.c (new 9)