Directory GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src/

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westram 2016-05-04 13:25 Rev.: 14808

* allow .patch files in HEADERLIBS
* use INT_MAX instead of numeric_limits

2 lines of code changed in 1 file:

• GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src: Beta.hpp (+2 -2)

westram 2016-05-04 12:36 Rev.: 14807

* fix compilation with gcc 6.1.0
- fix shift-overflow in mafft
- fix return type in {{{eigen}}} (using patch)
- let Cxx14 compilers use all Cxx11 features

2 lines of code changed in 1 file:

• GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src: Beta.hpp (+2 -1)

aboeckma 2013-07-31 11:14 Rev.: 10371

updated mafft version. Added extensions (no svn ignore, yet)

6910 lines of code changed in 21 files:

• GDE/MAFFT/mafft-7.055-with-extensions/extensions/mxscarna_src: AlifoldMEA.cpp (new 211), AlifoldMEA.h (new 63), BPPMatrix.hpp (new 130), Beta.hpp (new 201), GlobalParameters.cpp (new 27), Globaldp.cpp (new 557), Globaldp.hpp (new 109), Main.cc (new 1872), Makefile (new 77), McCaskill.cpp (new 839), McCaskill.hpp (new 202), README (new 129), ScoreType.hpp (new 340), StemCandidate.hpp (new 129), Util.hpp (new 102), config.h (new 86), nrutil.h (new 991), params-weird (new 10), postProcessings.cpp (new 91), scarna.hpp (new 124), seq2scs.cpp (new 620)