Directory SL/CONSENSUS/

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westram 2019-03-07 17:30 Rev.: 17651

* reintegrates 'cleanup' into 'trunk'
* adds: log:branches/cleanup@17627:17650

137 lines of code changed in 1 file:

• SL/CONSENSUS: chartable.cxx (+137 -79)

westram 2018-10-31 09:52 Rev.: 17593

* reintegrates 'fix' into 'trunk'
- performs #798
* adds genetic code tables (24-31)
* adds combined amino acid J (I or L)
* improved translate and/or realign
- handle optional start-/stop-codons
- improve recognition of nuc-triples containing IUPAC-codes
* error messages now always list EMBL table numbers
* adds:
- log:branches/fix@17480:17485,17491:17492,17494:17507,17509:17528,17534:17592
- log:branches/optional@17481:17568

1 lines of code changed in 1 file:

• SL/CONSENSUS: chartable.cxx (+1 -1)

westram 2017-11-28 18:22 Rev.: 16766

* reintegrates 'gcc' into 'trunk'
- mostly cosmetics changes
* adds: log:branches/gcc@16655,16741:16743,16752:16765

23 lines of code changed in 1 file:

• SL/CONSENSUS: chartable.cxx (+23 -46)

westram 2017-11-28 17:09 Rev.: 16763

* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

7 lines of code changed in 1 file:

• SL/CONSENSUS: chartable.cxx (+7 -7)

westram 2017-11-14 14:36 Rev.: 16653

* reintegrates 'gcc' into 'trunk' (fixes defect part of #752)
- allow compilation with gcc 7.x series (accepting 2 clang-test-results for gcc 7.x)
- vectorization:
* in {{{SL/CONSENSUS/chartable.cxx}}} works again with gcc 7.x (broken for 6.x series)
- checker: added syntax to exclude a range of versions
* check new 7.x vectorizations + fix vectorization-counts
* adds: log:branches/gcc@16578:16635,16649:16652

10 lines of code changed in 1 file:

• SL/CONSENSUS: chartable.cxx (+10 -10)

westram 2017-11-06 13:54 Rev.: 16628

* reintegrates 'vectorize' into 'trunk'
- fixes #700
* documented vectorization-checks
* fine-grained check based on gcc-version
- drops old gcc-versions (<4.4.3)
- new attribute {{{__ATTR__DONT_VECTORIZE}}}
* disabled vectorization of {{{POS_TREE2::init_static()}}} for newer gcc-versions (generated code fails tests)
- added a bunch of new vectorization-checks (probably irrelevant to overall performance)
* adds: log:branches/vectorize@15531:16585,16595:16627

11 lines of code changed in 1 file:

• SL/CONSENSUS: chartable.cxx (+11 -11)

westram 2017-08-23 12:42 Rev.: 16237

* fix spelling for 'occurrence'

2 lines of code changed in 1 file:

• SL/CONSENSUS: chartable.h (+2 -2)

westram 2017-01-13 07:55 Rev.: 15559

* reintegrates 'random' into 'trunk'
- replaces random number generator by portable version (using boost)
- approve changed test results (PARSIMONY: mix protein tree; CONSENSUS: random regression test)
- accept one unstable test result
* adds: log:branches/random@15551:15558

24 lines of code changed in 2 files:

• SL/CONSENSUS: Makefile (+5), chartable.cxx (+19 -13)

westram 2016-08-11 10:05 Rev.: 15176

* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

9 lines of code changed in 3 files:

• SL/CONSENSUS: Makefile (new), chartable.cxx (+8 -4)

westram 2015-11-10 12:36 Rev.: 14481

* disable DEBUG prints

1 lines of code changed in 1 file:

• SL/CONSENSUS: chartable.cxx (+1 -3)

westram 2015-11-08 12:17 Rev.: 14478

* stuff leak in static data of {{{BaseFrequencies}}}

0 lines of code changed in 4 files:

• SL/CONSENSUS: chartable.cxx (changed), chartable.h (new)