Directory SL/

Directory Created:
2004-12-21 19:18
Total Files:
2
Deleted Files:
0
Lines of Code:
95

[root]/SL
        directory in repo ALILINK (7 files, 2363 lines)
        directory in repo ALIVIEW (4 files, 177 lines)
        directory in repo AP_TREE (8 files, 2375 lines)
        directory in repo ARB_TREE (4 files, 569 lines)
        directory in repo AW_HELIX (4 files, 363 lines)
        directory in repo AW_NAME (5 files, 1058 lines)
        directory in repo CB (7 files, 1126 lines)
        directory in repo CONSENSUS (3 files, 1730 lines)
        directory in repo DB_QUERY (5 files, 2997 lines)
        directory in repo DB_SCANNER (4 files, 749 lines)
        directory in repo DB_UI (5 files, 2069 lines)
        directory in repo FAST_ALIGNER (8 files, 5873 lines)
        Folder removed from repo FILE_BUFFER (0 files, 0 lines)
        directory in repo FILTER (6 files, 901 lines)
        directory in repo FILTSEQEXP (3 files, 649 lines)
        directory in repo GROUP_SEARCH (3 files, 4170 lines)
        directory in repo GUI_ALIVIEW (9 files, 1355 lines)
        directory in repo HELIX (6 files, 807 lines)
        directory in repo INSDEL (2 files, 2365 lines)
        directory in repo ITEMS (9 files, 1572 lines)
        directory in repo ITEM_SHADER (5 files, 2392 lines)
        directory in repo LOCATION (4 files, 611 lines)
        directory in repo MACROS (10 files, 1867 lines)
        directory in repo MATRIX (4 files, 336 lines)
        directory in repo NDS (3 files, 1085 lines)
        directory in repo NEIGHBOURJOIN (5 files, 557 lines)
        directory in repo PRONUC (8 files, 2771 lines)
        directory in repo PTCLEAN (4 files, 256 lines)
        directory in repo PVP (2 files, 484 lines)
        directory in repo QUERY (3 files, 666 lines)
        directory in repo REFENTRIES (4 files, 526 lines)
        directory in repo REGEXPR (4 files, 370 lines)
        Folder removed from repo ROOTED_TREE (0 files, 0 lines)
        directory in repo SEQIO (5 files, 1125 lines)
        directory in repo SEQUENCE (10 files, 1757 lines)
        directory in repo TRANSLATE (4 files, 346 lines)
        directory in repo TREEDISP (10 files, 7359 lines)
        directory in repo TREE_ADMIN (4 files, 345 lines)
        directory in repo TREE_READ (5 files, 1235 lines)
        directory in repo TREE_WRITE (4 files, 576 lines)

Lines of Code

SL/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
westram 39 (100.0%) 210 (100.0%) 5.3

Most Recent Commits

westram 2019-03-13 20:02 Rev.: 17662


* fix svn_apply_ignores.pl:
- did only work with old svn versions. now uses 'svn list' to find entries.
- document that we need to commit new library directory before svn_apply_ignores.pl can be used.

3 lines of code changed in 1 file:

  • SL: README (+3 -3)
westram 2017-07-10 12:29 Rev.: 16119


* reintegrates 'saiexport' into 'trunk'
- implements #743
* adds: log:branches/saiexport@16023:16118

8 lines of code changed in 1 file:

  • SL: README (+8)
westram 2017-05-21 17:59 Rev.: 15966


* reintegrates 'group' into 'trunk'
- implements #652 (group search)
* adds: log:branches/group@15733:15740,15743:15748,15750:15752,15754,15756,15758:15777,15781:15793,15796,15798:15806,15808:15817,15819:15965

5 lines of code changed in 1 file:

  • SL: README (+5 -1)
westram 2017-04-29 13:28 Rev.: 15852


* reintegrates 'refactor' into 'trunk'
- separates query logic (as used in search&query) from actual data retrieval
* adds: log:branches/refactor@15820:15851

Note: introduces bug in merge-tool (fixed by [15996])

3 lines of code changed in 1 file:

  • SL: README (+3)
westram 2016-07-14 15:15 Rev.: 15054


* reintegrates 'color' into 'trunk'
- implements #443 (+parts of #444)
* adds: log:branches/color@14920:14921,14923:14928,14930:14939,14941:14951,14954:14956,14958:14959,14961:14964,14968,14970:14981,14985,14988,14990:14992,14994:14999,15001:15004,15007,15009,15012:15026,15028:15035,15037:15039,15041:15053

2 lines of code changed in 1 file:

  • SL: README (+2 -1)
westram 2015-03-29 12:47 Rev.: 13625


* reintegrates 'pars' into 'trunk'
- fixes #528, #609, #620, #631, #633, #640, #641
- implements #619, #627
* adds:
- log:branches/addtest@13123:13260,13523:13551,13570
- log:branches/check@13365:13375,13450:13457
- log:branches/check2@13458:13465
- log:branches/fix@13522:13588
- log:branches/fixres@13270:13277,13279:13293,13295:13326
- log:branches/pars@12938:13280,13282:13325,13327:13387,13389:13527,13530:13624

5 lines of code changed in 1 file:

  • SL: Makefile (+5)
westram 2013-10-29 13:55 Rev.: 10956


* made A_CC and A_CXX consistent
- A_CXX previously contained cxxflags
- cxxflags are now passed down and used separately

1 lines of code changed in 1 file:

  • SL: Makefile (+1 -2)
westram 2013-10-29 13:23 Rev.: 10955


- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

2 lines of code changed in 1 file:

  • SL: Makefile (+2 -2)
westram 2013-07-19 17:25 Rev.: 10311


- use SL instead of GDE to test dir-content

11 lines of code changed in 2 files:

  • SL: Makefile (+1 -10), README (new 10)
westram 2013-02-28 17:01 Rev.: 9633


* reintegrated branch 'sai'
- providing basic insert/delete by SAI

4 lines of code changed in 1 file:

  • SL: Makefile (+4 -1)
westram 2013-02-13 15:59 Rev.: 9580


* SL
- removed
* manual subdir list (now provides makability for any subdir)
* special DEBIAN handling
* unused $(MAIN) target
- added short howto-newlib (with "links")

16 lines of code changed in 1 file:

  • SL: Makefile (+16 -42)
westram 2013-02-13 13:24 Rev.: 9575


- effect of [9574] (comments only)

1 lines of code changed in 1 file:

  • SL: Makefile (+1 -1)
westram 2013-02-13 13:23 Rev.: 9574


- show from where dependencies are updated

1 lines of code changed in 1 file:

  • SL: Makefile (+1 -1)
westram 2012-04-15 19:18 Rev.: 8588


- moved SL/FILE_BUFFER into CORE

0 lines of code changed in 1 file:

  • SL: Makefile (-2)
westram 2012-04-05 11:41 Rev.: 8557


* moved some tree admin functions into SL/TREE_ADMIN
- use them from 'Tree admin' and from 'Merge trees'

1 lines of code changed in 1 file:

  • SL: Makefile (+1)
westram 2011-12-12 13:40 Rev.: 8297


- added dependency LOCATION -> links_non_perl (compilation failed depending on number of cores since [8250])
- added notes about when its neccessary to add such dependencies

2 lines of code changed in 1 file:

  • SL: Makefile (+2)
westram 2011-11-29 11:50 Rev.: 8250


* extracted library for Location from GENOM_IMPORT
- removes cyclic dependency from GENOM <> GENOM_IMPORT
- makes GENOM_IMPORT, GENOM and AWTI testable
* remove duplicated dependency EDIT4->ITEMS

1 lines of code changed in 1 file:

  • SL: Makefile (+1)
westram 2011-10-07 14:39 Rev.: 8041


merge from dev [7990] [7991] [7992] [7993] [7994] [7995] [7996] [7998] [8001] [8003] [8005] [8006] [8007] [8008] [8009] [8011] [8012] [8019]
* added a faked ecoli to ptserver test-db
* added unit-tests for gene-ptserver
* rename ptserver testdb
* ptserver db-cleanup
- size of mapfile for SSUREF108 is reduced by 85% (3,4Gb -> 519Mb)
* ptserver
- refactored
* prefix tree builders
* probe_input_data
- removed ptnd_new_match (dead code)

1 lines of code changed in 1 file:

  • SL: Makefile (+1)
westram 2011-08-07 18:41 Rev.: 7801


merge from dev [7710]
* resolve some nesting in library dependencies
- allows unit tests in GENOM and GENOM_IMPORT

4 lines of code changed in 1 file:

  • SL: Makefile (+4)
westram 2010-04-07 10:14 Rev.: 6573


- added missing lib (TRANSLATE)

1 lines of code changed in 1 file:

  • SL: Makefile (+1)
westram 2010-03-23 21:04 Rev.: 6550


- split AWTI into gui/nongui parts (only for export atm, non-gui import code may go to SL/SEQIO later)

1 lines of code changed in 1 file:

  • SL: Makefile (+1)
westram 2009-12-30 20:56 Rev.: 6318


* ARBDB
- compiles as C++ (no longer compiled as plain C)
- removed ARBDB2 + ARBDBS
- removed rotten C++-wrappers (ARBDBPP)
- generates special header for perl-interface to reduce dependencies (ad_p_prot.h)
* removed (ARBDB)
- gb_search_enum (merged with GB_TYPES)
* renamed (ARBDB)
- gbs_malloc_copy -> GB_memdup
- gb_search_types -> GB_SEARCH_TYPE + renamed enum-members
* tweaked perl interface
- code in ARBDB is now able to 'die' correctly (see GBP_croak_function)
- compiles as C++
- wrote generic functions for enum <-> string conversion (perl uses strings for enum values)
- added needed conversion functions
- removed handcoded xsubs (now all are generated by arb_proto_2_xsub - nevertheless, it's still possible to define xsubs manually)
- ARB::find and ARB::find_string (3rd parameter needs different values, only one file affected: PERL_SCRIPTS/GENOME/GI.pm - fixed)
- removed all functions using GBQUARK from perl interface
* perl interface generator (arb_proto_2_xsub)
- completely rewritten
- does automatic type conversion (expecting that the needed functions are defined in ARBDB/adperl.c)
* prototype generator
- compiles as C++
- switch -F accept's '!^' as beginning-of-name expression
* removed ARB_EDIT
- moved naligner interface code to EDIT4

1 lines of code changed in 1 file:

  • SL: Makefile (+1)
westram 2009-11-25 17:02 Rev.: 6280


* merge clusters branch back to trunk
- merged log:branches/clusters@6218:6261 at [6268]
- merged [6276] + [6278] at [6279]

19 lines of code changed in 1 file:

  • SL: Makefile (+19 -4)
westram 2009-06-05 21:02 Rev.: 6023


* moved tree I/O functions to separate libraries (TREE_READ.a and TREE_WRITE.a)
* link only with ARB_NTREE and arb_read_tree (before they were linked everywhere)

2 lines of code changed in 1 file:

  • SL: Makefile (+2)
westram 2009-04-30 22:34 Rev.: 5885


* moved fast-aligner to separate library

1 lines of code changed in 1 file:

  • SL: Makefile (+1)
westram 2009-04-29 13:20 Rev.: 5872


* Changed variable transfer to sub-makefiles
- most variables are now exported via environment (using SOURCE_TOOLS/export2sub or AISC/export2sub)
- only variables that contain different values for different sub-makefile-calls are passed by cl (e.g. cflags, MAIN)
- changed flavour of exported variables (recursively expanded -> simply expanded variables). Please use VAR := VALUE in Makefiles (not VAR = VALUE). See http://www.gnu.org/software/make/manual/html_node/Flavors.html#Flavors for details
* removed/fixed all undefined variables in Makefiles (using 'make --warn-undefined-variables')
* changed names of compile-logs generated in GDE subdir
* added target 'xmlin' (broken, print warning)

6 lines of code changed in 1 file:

  • SL: Makefile (+6 -27)
westram 2009-04-19 19:36 Rev.: 5829


* included some patches for OSX (thx to Matt Cottrell)
* added global switch LINK_STATIC
* added script which checks for tools needed to compile ARB
* typo CCPLIB->CPPLIB

1 lines of code changed in 1 file:

  • SL: Makefile (+1 -1)
westram 2009-04-11 15:52 Rev.: 5803


* added C++-Wrapper for regular expressions (REGEXPR.a)

1 lines of code changed in 1 file:

  • SL: Makefile (+1)
westram 2008-03-11 20:13 Rev.: 5228

- chaged forwarded variables for new makefile

15 lines of code changed in 1 file:

  • SL: Makefile (+15 -10)
westram 2008-03-03 18:42 Rev.: 5192

- renamed MODULE defines (_ARB -> IN_ARB)

1 lines of code changed in 1 file:

  • SL: Makefile (+1 -1)
westram 2008-03-01 12:13 Rev.: 5167

- removed marker line from 'clean'

0 lines of code changed in 1 file:

  • SL: Makefile (-1)
westram 2008-03-01 10:27 Rev.: 5165

- log wasn't removed in case of error

2 lines of code changed in 1 file:

  • SL: Makefile (+2 -2)
westram 2007-05-30 15:42 Rev.: 4636

- forward 'clean' to subdirs

8 lines of code changed in 1 file:

  • SL: Makefile (+8)
westram 2006-12-13 20:22 Rev.: 4257

- added FILE_BUFFER

1 lines of code changed in 1 file:

  • SL: Makefile (+1)
westram 2006-10-27 12:33 Rev.: 4216

- remove compile logs in any case

1 lines of code changed in 1 file:

  • SL: Makefile (+1 -1)
westram 2006-08-24 14:14 Rev.: 4171

- avoid output-mix of parallel make calls

5 lines of code changed in 1 file:

  • SL: Makefile (+5 -2)
westram 2005-05-24 13:33 Rev.: 3820

* SL/Makefile: - added AW_NAME.a and DB_SCANNER.a

2 lines of code changed in 1 file:

  • SL: Makefile (+2)
westram 2004-12-21 19:18 Rev.: 3501

- general makefile for small libraries

71 lines of code changed in 1 file:

  • SL: Makefile (new 71)
Generated by StatSVN 0.7.0