StatSVN - Directory SL/

[root]/SL

ALILINK (7 files, 2367 lines)

ALIVIEW (4 files, 172 lines)

AP_TREE (8 files, 2372 lines)

ARB_TREE (4 files, 565 lines)

AW_HELIX (4 files, 426 lines)

AW_NAME (5 files, 1074 lines)

CB (7 files, 1127 lines)

CONSENSUS (3 files, 1730 lines)

DB_QUERY (5 files, 3021 lines)

DB_SCANNER (4 files, 801 lines)

DB_UI (5 files, 2065 lines)

FAST_ALIGNER (8 files, 5861 lines)

FILE_BUFFER (0 files, 0 lines)

FILTER (6 files, 901 lines)

FILTSEQEXP (3 files, 652 lines)

GROUP_SEARCH (3 files, 4222 lines)

GUI_ALIVIEW (9 files, 1352 lines)

HELIX (6 files, 824 lines)

INSDEL (3 files, 2421 lines)

ITEMS (10 files, 1735 lines)

ITEM_SHADER (5 files, 2393 lines)

LOCATION (4 files, 611 lines)

MACROS (10 files, 1964 lines)

MATRIX (4 files, 319 lines)

NDS (3 files, 1225 lines)

NEIGHBOURJOIN (5 files, 574 lines)

PRONUC (8 files, 2764 lines)

PTCLEAN (4 files, 262 lines)

PVP (3 files, 565 lines)

QUERY (3 files, 667 lines)

REFENTRIES (4 files, 527 lines)

REGEXPR (4 files, 365 lines)

ROOTED_TREE (0 files, 0 lines)

SAICALC (5 files, 3200 lines)

SEQIO (5 files, 1221 lines)

SEQUENCE (10 files, 1755 lines)

TRANSLATE (4 files, 340 lines)

TREEDISP (10 files, 7583 lines)

TREE_ADMIN (4 files, 344 lines)

TREE_READ (5 files, 1221 lines)

TREE_WRITE (5 files, 616 lines)

XFERGUI (2 files, 1294 lines)

XFERSET (3 files, 2152 lines)

Author	Changes	Lines of Code	Lines per Change
westram	42 (100.0%)	227 (100.0%)	5.4

Most Recent Commits

westram 2023-08-05 12:46 Rev.: 19447

* suppression of warnings for source-subtrees:
- comment + warn when suppressed (currently suppressed in GDE)

2 lines of code changed in 1 file:

SL: Makefile (+2 -1)

westram 2022-03-04 11:26 Rev.: 18959

* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958

13 lines of code changed in 1 file:

SL: README (+13 -7)

westram 2020-04-01 16:21 Rev.: 18426

* reintegrates 'unittest' into 'trunk'
* adds: log:branches/unittest@18363:18425

2 lines of code changed in 1 file:

SL: README (+2 -2)

westram 2019-03-13 19:02 Rev.: 17662

* fix svn_apply_ignores.pl:
- did only work with old svn versions. now uses 'svn list' to find entries.
- document that we need to commit new library directory before svn_apply_ignores.pl can be used.

3 lines of code changed in 1 file:

SL: README (+3 -3)

westram 2017-07-10 11:29 Rev.: 16119

* reintegrates 'saiexport' into 'trunk'
- implements #743
* adds: log:branches/saiexport@16023:16118

8 lines of code changed in 1 file:

SL: README (+8)

westram 2017-05-21 16:59 Rev.: 15966

* reintegrates 'group' into 'trunk'
- implements #652 (group search)
* adds: log:branches/group@15733:15740,15743:15748,15750:15752,15754,15756,15758:15777,15781:15793,15796,15798:15806,15808:15817,15819:15965

5 lines of code changed in 1 file:

SL: README (+5 -1)

westram 2017-04-29 12:28 Rev.: 15852

* reintegrates 'refactor' into 'trunk'
- separates query logic (as used in search&query) from actual data retrieval
* adds: log:branches/refactor@15820:15851

Note: introduces bug in merge-tool (fixed by [15996])

3 lines of code changed in 1 file:

SL: README (+3)

westram 2016-07-14 14:15 Rev.: 15054

* reintegrates 'color' into 'trunk'
- implements #443 (+parts of #444)
* adds: log:branches/color@14920:14921,14923:14928,14930:14939,14941:14951,14954:14956,14958:14959,14961:14964,14968,14970:14981,14985,14988,14990:14992,14994:14999,15001:15004,15007,15009,15012:15026,15028:15035,15037:15039,15041:15053

2 lines of code changed in 1 file:

SL: README (+2 -1)

westram 2015-03-29 11:47 Rev.: 13625

* reintegrates 'pars' into 'trunk'
- fixes #528, #609, #620, #631, #633, #640, #641
- implements #619, #627
* adds:
- log:branches/addtest@13123:13260,13523:13551,13570
- log:branches/check@13365:13375,13450:13457
- log:branches/check2@13458:13465
- log:branches/fix@13522:13588
- log:branches/fixres@13270:13277,13279:13293,13295:13326
- log:branches/pars@12938:13280,13282:13325,13327:13387,13389:13527,13530:13624

5 lines of code changed in 1 file:

SL: Makefile (+5)

westram 2013-10-29 12:55 Rev.: 10956

* made A_CC and A_CXX consistent
- A_CXX previously contained cxxflags
- cxxflags are now passed down and used separately

1 lines of code changed in 1 file:

SL: Makefile (+1 -2)

westram 2013-10-29 12:23 Rev.: 10955

- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

2 lines of code changed in 1 file:

SL: Makefile (+2 -2)

westram 2013-07-19 16:25 Rev.: 10311

- use SL instead of GDE to test dir-content

11 lines of code changed in 2 files:

SL: Makefile (+1 -10), README (new 10)

westram 2013-02-28 16:01 Rev.: 9633

* reintegrated branch 'sai'
- providing basic insert/delete by SAI

4 lines of code changed in 1 file:

SL: Makefile (+4 -1)

westram 2013-02-13 14:59 Rev.: 9580

* SL
- removed
* manual subdir list (now provides makability for any subdir)
* special DEBIAN handling
* unused $(MAIN) target
- added short howto-newlib (with "links")

16 lines of code changed in 1 file:

SL: Makefile (+16 -42)

westram 2013-02-13 12:24 Rev.: 9575

- effect of [9574] (comments only)

1 lines of code changed in 1 file:

SL: Makefile (+1 -1)

westram 2013-02-13 12:23 Rev.: 9574

- show from where dependencies are updated

1 lines of code changed in 1 file:

SL: Makefile (+1 -1)

westram 2012-04-15 18:18 Rev.: 8588

- moved SL/FILE_BUFFER into CORE

0 lines of code changed in 1 file:

SL: Makefile (-2)

westram 2012-04-05 10:41 Rev.: 8557

* moved some tree admin functions into SL/TREE_ADMIN
- use them from 'Tree admin' and from 'Merge trees'

1 lines of code changed in 1 file:

SL: Makefile (+1)

westram 2011-12-12 12:40 Rev.: 8297

- added dependency LOCATION -> links_non_perl (compilation failed depending on number of cores since [8250])
- added notes about when its neccessary to add such dependencies

2 lines of code changed in 1 file:

SL: Makefile (+2)

westram 2011-11-29 10:50 Rev.: 8250

* extracted library for Location from GENOM_IMPORT
- removes cyclic dependency from GENOM <> GENOM_IMPORT
- makes GENOM_IMPORT, GENOM and AWTI testable
* remove duplicated dependency EDIT4->ITEMS

1 lines of code changed in 1 file:

SL: Makefile (+1)

westram 2011-10-07 13:39 Rev.: 8041

merge from dev [7990] [7991] [7992] [7993] [7994] [7995] [7996] [7998] [8001] [8003] [8005] [8006] [8007] [8008] [8009] [8011] [8012] [8019]
* added a faked ecoli to ptserver test-db
* added unit-tests for gene-ptserver
* rename ptserver testdb
* ptserver db-cleanup
- size of mapfile for SSUREF108 is reduced by 85% (3,4Gb -> 519Mb)
* ptserver
- refactored
* prefix tree builders
* probe_input_data
- removed ptnd_new_match (dead code)

1 lines of code changed in 1 file:

SL: Makefile (+1)

westram 2011-08-07 17:41 Rev.: 7801

merge from dev [7710]
* resolve some nesting in library dependencies
- allows unit tests in GENOM and GENOM_IMPORT

4 lines of code changed in 1 file:

SL: Makefile (+4)

westram 2010-04-07 09:14 Rev.: 6573

- added missing lib (TRANSLATE)

1 lines of code changed in 1 file:

SL: Makefile (+1)

westram 2010-03-23 20:04 Rev.: 6550

- split AWTI into gui/nongui parts (only for export atm, non-gui import code may go to SL/SEQIO later)

1 lines of code changed in 1 file:

SL: Makefile (+1)

westram 2009-12-30 19:56 Rev.: 6318

* ARBDB
- compiles as C++ (no longer compiled as plain C)
- removed ARBDB2 + ARBDBS
- removed rotten C++-wrappers (ARBDBPP)
- generates special header for perl-interface to reduce dependencies (ad_p_prot.h)
* removed (ARBDB)
- gb_search_enum (merged with GB_TYPES)
* renamed (ARBDB)
- gbs_malloc_copy -> GB_memdup
- gb_search_types -> GB_SEARCH_TYPE + renamed enum-members
* tweaked perl interface
- code in ARBDB is now able to 'die' correctly (see GBP_croak_function)
- compiles as C++
- wrote generic functions for enum <-> string conversion (perl uses strings for enum values)
- added needed conversion functions
- removed handcoded xsubs (now all are generated by arb_proto_2_xsub - nevertheless, it's still possible to define xsubs manually)
- ARB::find and ARB::find_string (3rd parameter needs different values, only one file affected: PERL_SCRIPTS/GENOME/GI.pm - fixed)
- removed all functions using GBQUARK from perl interface
* perl interface generator (arb_proto_2_xsub)
- completely rewritten
- does automatic type conversion (expecting that the needed functions are defined in ARBDB/adperl.c)
* prototype generator
- compiles as C++
- switch -F accept's '!^' as beginning-of-name expression
* removed ARB_EDIT
- moved naligner interface code to EDIT4

1 lines of code changed in 1 file:

SL: Makefile (+1)

westram 2009-11-25 16:02 Rev.: 6280

* merge clusters branch back to trunk
- merged log:branches/clusters@6218:6261 at [6268]
- merged [6276] + [6278] at [6279]

19 lines of code changed in 1 file:

SL: Makefile (+19 -4)

westram 2009-06-05 20:02 Rev.: 6023

* moved tree I/O functions to separate libraries (TREE_READ.a and TREE_WRITE.a)
* link only with ARB_NTREE and arb_read_tree (before they were linked everywhere)

2 lines of code changed in 1 file:

SL: Makefile (+2)

westram 2009-04-30 21:34 Rev.: 5885

* moved fast-aligner to separate library

1 lines of code changed in 1 file:

SL: Makefile (+1)

westram 2009-04-29 12:20 Rev.: 5872

* Changed variable transfer to sub-makefiles
- most variables are now exported via environment (using SOURCE_TOOLS/export2sub or AISC/export2sub)
- only variables that contain different values for different sub-makefile-calls are passed by cl (e.g. cflags, MAIN)
- changed flavour of exported variables (recursively expanded -> simply expanded variables). Please use VAR := VALUE in Makefiles (not VAR = VALUE). See http://www.gnu.org/software/make/manual/html_node/Flavors.html#Flavors for details
* removed/fixed all undefined variables in Makefiles (using 'make --warn-undefined-variables')
* changed names of compile-logs generated in GDE subdir
* added target 'xmlin' (broken, print warning)

6 lines of code changed in 1 file:

SL: Makefile (+6 -27)

westram 2009-04-19 18:36 Rev.: 5829

* included some patches for OSX (thx to Matt Cottrell)
* added global switch LINK_STATIC
* added script which checks for tools needed to compile ARB
* typo CCPLIB->CPPLIB

1 lines of code changed in 1 file:

SL: Makefile (+1 -1)

westram 2009-04-11 14:52 Rev.: 5803

* added C++-Wrapper for regular expressions (REGEXPR.a)

1 lines of code changed in 1 file:

SL: Makefile (+1)

westram 2008-03-11 19:13 Rev.: 5228

- chaged forwarded variables for new makefile

15 lines of code changed in 1 file:

SL: Makefile (+15 -10)

westram 2008-03-03 17:42 Rev.: 5192

- renamed MODULE defines (_ARB -> IN_ARB)

1 lines of code changed in 1 file:

SL: Makefile (+1 -1)

westram 2008-03-01 11:13 Rev.: 5167

- removed marker line from 'clean'

0 lines of code changed in 1 file:

SL: Makefile (-1)

westram 2008-03-01 09:27 Rev.: 5165

- log wasn't removed in case of error

2 lines of code changed in 1 file:

SL: Makefile (+2 -2)

westram 2007-05-30 14:42 Rev.: 4636

- forward 'clean' to subdirs

8 lines of code changed in 1 file:

SL: Makefile (+8)

westram 2006-12-13 19:22 Rev.: 4257

- added FILE_BUFFER

1 lines of code changed in 1 file:

SL: Makefile (+1)

westram 2006-10-27 11:33 Rev.: 4216

- remove compile logs in any case

1 lines of code changed in 1 file:

SL: Makefile (+1 -1)

westram 2006-08-24 13:14 Rev.: 4171

- avoid output-mix of parallel make calls

5 lines of code changed in 1 file:

SL: Makefile (+5 -2)

westram 2005-05-24 12:33 Rev.: 3820

* SL/Makefile: - added AW_NAME.a and DB_SCANNER.a

2 lines of code changed in 1 file:

SL: Makefile (+2)

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