Directory SL/AW_HELIX/

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westram 2023-07-04 11:14 Rev.: 19425

* reintegrates 'ali' into 'trunk'
- refactorings + fixes related to SEQ_QUALITY + HELIX
* adds: log:branches/ali@19407:19424

40 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.cxx (+40 -39)

westram 2023-06-25 15:30 Rev.: 19407

* reintegrates 'ali' into 'trunk'
- use bond settings from EDIT4 in SECEDIT
- fix refresh logic
- refactor underlying code
* adds: log:branches/ali@19393:19406

139 lines of code changed in 3 files:

• SL/AW_HELIX: AW_helix.cxx (+126 -72), AW_helix.hxx (+12 -5), Makefile (+1)

westram 2023-06-15 14:31 Rev.: 19393

* reintegrates 'ali' into 'trunk'
- refactored misused enum
- support for helix pairs:
* drop non-standard defs
* add more user defs
- change defaults
- add several predefined configs (esp. for IUPAC ambiguity codes)
* adds: log:branches/ali@19376:19392

60 lines of code changed in 2 files:

• SL/AW_HELIX: AW_helix.cxx (+58 -54), AW_helix.hxx (+2 -2)

westram 2023-05-25 13:50 Rev.: 19363

* reintegrates 'ali' into 'trunk'
* basically implements #854
* adds: log:branches/ali@19357:19362

2 lines of code changed in 2 files:

• SL/AW_HELIX: AW_helix.cxx (+1 -1), AW_helix.hxx (+1 -1)

westram 2022-03-04 11:26 Rev.: 18959

* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1)

westram 2021-09-15 12:52 Rev.: 18730

* remove trailing whitespace from c source.

1 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.cxx (+1 -1)

westram 2021-09-15 12:37 Rev.: 18724

* directly use {{{OBJECTS}}}.

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1 -2)

westram 2021-09-15 12:31 Rev.: 18723

* remove .c rules.
* add .c suffix (in SOURCE_TOOLS).

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1 -4)

westram 2021-09-15 12:00 Rev.: 18720

* select units using {{{wildcard}}}.

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1 -1)

westram 2021-09-15 11:53 Rev.: 18718

* eliminate unused {{{C_OBJECTS}}}.

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1 -2)

westram 2019-04-01 16:41 Rev.: 17724

* partial merge from 'fts' into 'trunk'
- {{{ConfigMapping}}}:
* cleanup
* add missing tests
* fix config bug: trailing backslash at end of values did cause wrong read of data
* adds: log:branches/fts@17718:17723

2 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+2)

westram 2018-09-20 17:43 Rev.: 17396

* reintegrates 'fix' into 'trunk'
- elim dead code
- use const hash loop
* adds: log:branches/fix@17380,17388:17395

1 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.cxx (+1 -1)

westram 2018-05-02 10:32 Rev.: 16961

* partial merge from 'fix' into 'trunk'
- refactored {{{AW_device}}} text output
* reduces calls to strlen (using {{{SizedCstr}}})
* eliminated/modernized several parameters/functions (esp. in {{{TextOverlayCallback}}}s)
* adds: log:branches/fix@16939:16960

1 lines of code changed in 3 files:

• SL/AW_HELIX: AW_helix.cxx (-30), AW_helix.hxx (-1), Makefile (+1)

westram 2017-11-28 17:09 Rev.: 16763

* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

3 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.cxx (+3 -3)

westram 2016-08-30 11:30 Rev.: 15254

* depends for [15253]

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1)

westram 2016-08-11 10:05 Rev.: 15176

* reintegrates 'fixres' into 'trunk'
- fixes #715
* adds: log:branches/fixres@15127:15175

2 lines of code changed in 2 files:

• SL/AW_HELIX: AW_helix.cxx (+1 -1), Makefile (+1)

westram 2016-04-16 13:52 Rev.: 14731

* mark code binding callbacks to non-button-widgets (probably incomplete; see #559 for details)

3 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.cxx (+3 -3)

westram 2015-12-17 17:11 Rev.: 14626

* sync gtk and motif versions

0 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.hxx (-2)

westram 2015-09-08 12:45 Rev.: 14273

* pass refresh callback as typed callback
- Note: IIRC this is the first use of a (pointer to a static) typed callback as parameter of another typed callback

12 lines of code changed in 2 files:

• SL/AW_HELIX: AW_helix.cxx (+8 -8), AW_helix.hxx (+4 -1)

westram 2015-04-16 16:30 Rev.: 13735

* add config manager to helix properties

19 lines of code changed in 2 files:

• SL/AW_HELIX: AW_helix.cxx (+18), Makefile (+1)

westram 2015-01-23 14:19 Rev.: 13443

* reintegrates 'vectorize' into 'trunk'
- adds vectorization check for gcc 4.9.x / NDEBUG compile
* adds:
- log:branches/vectorize@13428:13442

2 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+2 -2)

westram 2013-11-02 16:41 Rev.: 11034

* depends for [11033]

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1)

westram 2013-10-31 14:10 Rev.: 10996

* use cflags before cxxflags

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1 -1)

westram 2013-10-30 15:58 Rev.: 10974

* renamed include variables

2 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+2 -2)

westram 2013-10-29 12:55 Rev.: 10956

* made A_CC and A_CXX consistent
- A_CXX previously contained cxxflags
- cxxflags are now passed down and used separately

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1 -1)

westram 2013-10-29 12:23 Rev.: 10955

- renamed
* ACC -> A_CC
* CPP -> A_CXX (misleading atm, since it contains c++flags)

2 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+2 -2)

westram 2013-10-29 11:43 Rev.: 10954

- document mechanism used by ARB to export variables to submakefiles
- document most important variables

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1 -1)

westram 2013-10-21 13:16 Rev.: 10863

* replaced usage of untyped AW_POPUP_HELP

1 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.cxx (+1 -1)

epruesse 2013-10-06 11:27 Rev.: 10745

remove use of AW_cb outside of WINDOW (scheduled for removal in gtkport).
this is a hack, I know. I'm open to suggestions.

7 lines of code changed in 2 files:

• SL/AW_HELIX: AW_helix.cxx (+6 -7), AW_helix.hxx (+1 -1)

westram 2013-09-09 15:36 Rev.: 10563

- include downcast.h from arbdbt.h
(this break C++11 compilation, i.e. gcc4.8 or newer)[[BR]]
amendment:
* also broke compilation on ubuntu 13.04 and with gcc 4.7.3 (due to nameclash with boost)

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1)

westram 2013-07-04 15:49 Rev.: 10212

* depends for recent patches

3 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+3)

westram 2013-07-04 15:22 Rev.: 10209

* reintegrate branch 'bpcb' (examples; non-WINDOW)

5 lines of code changed in 2 files:

• SL/AW_HELIX: AW_helix.cxx (+4 -4), AW_helix.hxx (+1 -1)

westram 2013-07-04 14:59 Rev.: 10206

* merge from bpcb [10181] [10186] (renames in WINDOW)

5 lines of code changed in 2 files:

• SL/AW_HELIX: AW_helix.cxx (+3 -3), AW_helix.hxx (+2 -2)

westram 2013-02-13 12:24 Rev.: 9575

- effect of [9574] (comments only)

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1 -1)

westram 2013-02-09 12:52 Rev.: 9521

- updated depends for [9520]

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1)

westram 2013-02-09 11:16 Rev.: 9516

- reintegrated branch 'cxx11'

1 lines of code changed in 1 file:

• SL/AW_HELIX: Makefile (+1)

westram 2012-04-11 12:19 Rev.: 8574

* [8567] failed on WCs where shared libs were up-to-date, but not yet present in $ARBHOME/lib
- link libs directly in $ARBHOME/lib
* no longer create 'SHARED.a' in shared-library-dirs
* unit tests caused build of 'SHARED.so' (instead of 'libSHARED.so'). Every library existed twice.
- changed test-target-names for shared libaries (e.g. ARBDB/ARBDB.test -> ARBDB/libARBDB.test)
- added failing stopper targets to main-Makefile and shared-lib-Makefiles
* changed all dependencies to shared libs
* fixed dependency scripts to perform correct translations from lib/libUNIT.so <-> UNIT/UNIT.(dummy|a). omg :/
* updated predefined RESTRICT_LIB entries in UNIT_TESTER/Makefile.setup.template
- check whether RESTRICT_LIB uses obsolete test-names (e.g. ARBDB instead of libARBDB) and fail if.

1 lines of code changed in 1 file:

• SL/AW_HELIX: needs_libs (+1 -1)

westram 2012-02-18 16:43 Rev.: 8423

* use !LocallyModify for several flags

34 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.cxx (+34 -34)

westram 2011-12-20 12:29 Rev.: 8309

* moved much code into static scope

(partly reverted by [8310])

1 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.cxx (+1 -1)

westram 2011-06-16 19:16 Rev.: 7666

* merge from dev [7539] [7541] [7543] [7544] [7548] [7549] [7550] [7552] [7553] [7554] [7555] [7556] [7557] [7558] [7559] [7561] [7562] [7563] [7564] [7565] [7566] [7567] [7568] [7569] [7570] [7571] [7572] [7574] [7575]
- behavioral changes
* when jumping to gene the text will also move into viewport
* this slightly changed the zoom used in IRS tree
* dont try to draw clipped bracket
* arcs were not drawn if NW-quadrant was not fully visible
* fixed '~'-bond (SECEDIT): use constants; fixed a small gap sometimes visible; reduced OUTSIDE overhang of arcs by 15 degrees
* reset disp_device after show()
- use new type AW_rgb for colors
- removed old-style enum typedefs
- refactored
* AW_GC
* DRYed AWT_graphic_tree::show() vs fake_AWT_graphic_tree::test_show_tree()
* AW_clipable
* moved font_overlap values into AW_font_overlap
* AW_device
- removed transform/rtransform flavors using ints (replaced usages by Position/Rectangle transformations)
- added get_rtransformed_cliprect
- pass radius as Vector (circle/arc)
- fixed degrees chaos in arc params: arc_degrees now also is clockwise (like start_degrees) - both are clockwise cause ARBs y-coordinate grows downwards
- invisible_impl uses Position as param
- fixed return type of draw functions
- fixed a bug in pop_clip_scale
* push+pop did not restore scale and offset properly (only if zoom was not 1.0)
* reset AW_zoomable before restoring and restore offset before scale
- AW_device_Xm
* refactored arc_impl
- AW_device_print
* refactored circle_impl
- added assertion against drawing zero-sized circles
- test for positive radius before drawing bootstrap circles (e.g. if branchlength is zero)
- "fix" clipping of circles on AW_device_print (only affects printing when "screen only" is selected)
* if more than half of circle gets clipped -> skip circle
* otherwise force circle into clipped bounding rectangle (i.e. print a smaller circle, that fits on the screen)
* basic implementation of AW_device_print::arc_impl
- arcs based on circles are drawn using xfigs ARC command
- arcs based on ellipses are interpolated using splines
- clipping does some as with circles (clip bounding-box and draw arc inside; if less than half of arc is inside clipping area, skip arc completely)
* separated fprintf into single lines for better documentation of single xfig parameters
* AW_area_management (made member variables private + split up with useless friends)

2 lines of code changed in 1 file:

• SL/AW_HELIX: AW_helix.cxx (+2 -2)

(29 more)