Directory PERL_SCRIPTS/GENOME/

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westram 2020-09-23 13:39 Rev.: 18478

* mark other scripts that might need "eval vs. die-catcher" fixes.

1 lines of code changed in 1 file:

• PERL_SCRIPTS/GENOME: collect_gene_info.pl (+1 -1)

westram 2016-01-23 07:20 Rev.: 14674

* rename {{{GB_write_as_string}}} -> {{{GB_write_autoconv_string}}}

1 lines of code changed in 1 file:

• PERL_SCRIPTS/GENOME: GI.pm (+1 -1)

westram 2011-09-21 14:21 Rev.: 7971

- perl script to collect information from gene-field and store it into organism-field

156 lines of code changed in 2 files:

• PERL_SCRIPTS/GENOME: GI.pm (+38 -4), collect_gene_info.pl (new 118)

westram 2009-12-30 20:56 Rev.: 6318

* ARBDB
- compiles as C++ (no longer compiled as plain C)
- removed ARBDB2 + ARBDBS
- removed rotten C++-wrappers (ARBDBPP)
- generates special header for perl-interface to reduce dependencies (ad_p_prot.h)
* removed (ARBDB)
- gb_search_enum (merged with GB_TYPES)
* renamed (ARBDB)
- gbs_malloc_copy -> GB_memdup
- gb_search_types -> GB_SEARCH_TYPE + renamed enum-members
* tweaked perl interface
- code in ARBDB is now able to 'die' correctly (see GBP_croak_function)
- compiles as C++
- wrote generic functions for enum <-> string conversion (perl uses strings for enum values)
- added needed conversion functions
- removed handcoded xsubs (now all are generated by arb_proto_2_xsub - nevertheless, it's still possible to define xsubs manually)
- ARB::find and ARB::find_string (3rd parameter needs different values, only one file affected: PERL_SCRIPTS/GENOME/GI.pm - fixed)
- removed all functions using GBQUARK from perl interface
* perl interface generator (arb_proto_2_xsub)
- completely rewritten
- does automatic type conversion (expecting that the needed functions are defined in ARBDB/adperl.c)
* prototype generator
- compiles as C++
- switch -F accept's '!^' as beginning-of-name expression
* removed ARB_EDIT
- moved naligner interface code to EDIT4

1 lines of code changed in 1 file:

• PERL_SCRIPTS/GENOME: GI.pm (+1 -1)

westram 2009-11-21 15:24 Rev.: 6263

- removed deprecated function GB_get_error() aka get_error() from perl interface

5 lines of code changed in 2 files:

• PERL_SCRIPTS/GENOME: GI.pm (+3 -3), import_proteomdata.pl (+2 -2)

westram 2009-04-24 13:25 Rev.: 5858

* fixed errors and warnings in perl scripts

9 lines of code changed in 2 files:

• PERL_SCRIPTS/GENOME: GI.pm (+7 -5), import_proteomdata.pl (+2 -2)

westram 2008-12-25 14:03 Rev.: 5675

- removed automatic timestamps (the best they were good for, were vc-conflicts)

0 lines of code changed in 1 file:

• PERL_SCRIPTS/GENOME: GI.pm (-1)

westram 2004-08-05 15:50 Rev.: 3044

uses ARB

3 lines of code changed in 1 file:

• PERL_SCRIPTS/GENOME: GI.pm (+3 -1)

westram 2004-08-05 15:50 Rev.: 3043

- changed method to push include paths

10 lines of code changed in 1 file:

• PERL_SCRIPTS/GENOME: import_proteomdata.pl (+10 -4)

westram 2004-08-05 14:28 Rev.: 3042

- fixed include path

1 lines of code changed in 1 file:

• PERL_SCRIPTS/GENOME: import_proteomdata.pl (+1 -1)

westram 2004-04-29 11:46 Rev.: 2671

- fixed lib path
- uses strict and warnings

4 lines of code changed in 1 file:

• PERL_SCRIPTS/GENOME: import_proteomdata.pl (+4 -1)

westram 2003-12-18 14:44 Rev.: 2290

- perl script to import proteomdata

288 lines of code changed in 2 files:

• PERL_SCRIPTS/GENOME: GI.pm (new 192), import_proteomdata.pl (new 96)