Directory [root]

Directory Created:
2000-11-23 11:41
Total Files:
17
Deleted Files:
22
Lines of Code:
7739

[root]
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    directory in repo CONSENSUS_TREE (16 files, 3495 lines)
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                directory in repo core (90 files, 75634 lines)
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                directory in repo src (68 files, 78797 lines)
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        directory in repo LOCATION (4 files, 611 lines)
        directory in repo MACROS (10 files, 1871 lines)
        directory in repo MATRIX (4 files, 319 lines)
        directory in repo NDS (3 files, 1225 lines)
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        directory in repo PRONUC (8 files, 2764 lines)
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        directory in repo QUERY (3 files, 667 lines)
        directory in repo REFENTRIES (4 files, 527 lines)
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        directory in repo TRANSLATE (4 files, 340 lines)
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        directory in repo TREE_ADMIN (4 files, 346 lines)
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        directory in repo XFERGUI (2 files, 1294 lines)
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    directory in repo SOURCE_TOOLS (63 files, 10742 lines)
        directory in repo COMPILE_COMPAT (4 files, 131 lines)
        directory in repo docs (1 files, 79 lines)
        directory in repo refactor (2 files, 32 lines)
        directory in repo release (2 files, 407 lines)
    directory in repo STAT (9 files, 2156 lines)
    directory in repo TEMPLATES (48 files, 8383 lines)
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    directory in repo UNIT_TESTER (24 files, 6113 lines)
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    directory in repo lib (8 files, 12081 lines)
        directory in repo BUGS (2 files, 69 lines)
        directory in repo addlibs (1 files, 14 lines)
        directory in repo arb_default (7 files, 694 lines)
        directory in repo desktop (4 files, 21 lines)
        directory in repo dtd (2 files, 92 lines)
        directory in repo export (14 files, 130 lines)
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        directory in repo pictures (102 files, 3716 lines)
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            directory in repo awt (19 files, 599 lines)
            directory in repo awtc (2 files, 47 lines)
            directory in repo consensus (2 files, 368 lines)
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            directory in repo merge (12 files, 473 lines)
            directory in repo pars (3 files, 184 lines)
            directory in repo phylo (3 files, 67 lines)
            directory in repo query (5 files, 133 lines)
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        directory in repo pixmaps (84 files, 3509 lines)
            directory in repo edit (20 files, 602 lines)
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            directory in repo icons (7 files, 273 lines)
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        directory in repo rna3d (5 files, 4617 lines)
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        directory in repo submit (3 files, 1061 lines)
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    directory in repo util (18 files, 1629 lines)

Lines of Code

Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 1176 (100.0%) 16278 (100.0%) 13.8
westram 1069 (90.9%) 14984 (92.1%) 14.0
oldcode 9 (0.8%) 760 (4.7%) 84.4
epruesse 33 (2.8%) 281 (1.7%) 8.5
boehnel 4 (0.3%) 75 (0.5%) 18.7
yadhu 17 (1.4%) 74 (0.5%) 4.3
meierh 12 (1.0%) 24 (0.1%) 2.0
richter 4 (0.3%) 19 (0.1%) 4.7
baderk 17 (1.4%) 18 (0.1%) 1.0
spanfeln 1 (0.1%) 11 (0.1%) 11.0
foerster 2 (0.2%) 11 (0.1%) 5.5
arb_build 1 (0.1%) 8 (0.0%) 8.0
aboeckma 2 (0.2%) 5 (0.0%) 2.5
jobb 1 (0.1%) 4 (0.0%) 4.0
artemov 2 (0.2%) 2 (0.0%) 1.0
littschw 1 (0.1%) 1 (0.0%) 1.0
lai 1 (0.1%) 1 (0.0%) 1.0

Most Recent Commits

westram 2022-07-21 14:01 Rev.: 19167


* reintegrates 'split' into 'trunk'
* adds: log:branches/split@19102:19166

1 lines of code changed in 1 file:

  • arb_CHANGES.txt (+1)
westram 2022-06-25 09:50 Rev.: 19076


* set default values early:
- SANITIZE (avoids warning about undefined variable).
- IGNORE_LEAKS

10 lines of code changed in 1 file:

  • Makefile (+10 -14)
westram 2022-06-22 10:44 Rev.: 19074


* partial merge from 'sina' into 'trunk'
* adds: log:branches/sina@19070:19071

48 lines of code changed in 1 file:

  • Makefile (+48 -1)
westram 2022-06-17 13:29 Rev.: 19060


* align version numbers (cosmetic).

11 lines of code changed in 1 file:

  • Makefile (+11 -11)
westram 2022-06-17 13:28 Rev.: 19059


* accept gcc 10.x-series (1-3)

1 lines of code changed in 1 file:

  • Makefile (+1)
westram 2022-06-17 11:56 Rev.: 19056


* accept gcc 9.5.0
- vectorizations fail as with 9.4.0

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2022-06-17 11:41 Rev.: 19055


* accept gcc 9.4.0
* loop vectorizations failing with gcc 9.1 - 9.3 also fail with 9.4.

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2022-06-17 11:39 Rev.: 19054


* accept gcc 8.5.0

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2022-05-20 09:39 Rev.: 19043


* only check for {{{makedepend}}} when dependencies are updated (not required for plain build).
* update requirements
- makedepend not required for compile (only for develop).
- opengl.

16 lines of code changed in 3 files:

  • Makefile (+6 -5), arb_INSTALL.txt (+6 -4), arb_UBUNTU.txt (+4 -13)
westram 2022-05-18 13:59 Rev.: 19033


* set optimization level to 1 (instead of 0)
- otherwise sanitizer reports bogus buffer-overflows.
- bug had been introduced by r18890
* comment (buffer-overflows occurred in static variable 'glservercntrl' - weird)

4 lines of code changed in 1 file:

  • Makefile (+4)
westram 2022-04-06 14:34 Rev.: 18983


* updated openGL requirements (for openSuSE leap 15.3).

4 lines of code changed in 1 file:

  • arb_INSTALL.txt (+4 -2)
westram 2022-04-06 14:33 Rev.: 18982


* fix for sun/rpc moved from glib->libtirpc (e.g. openSuSE leap 15.3 + Fedora 28)

18 lines of code changed in 2 files:

  • Makefile (+16 -2), arb_INSTALL.txt (+2 -1)
westram 2022-04-06 14:29 Rev.: 18981


* export/use {{{ARB_CORE_LIBS}}} (instead of using {{{ARB_GLIB_LIBS}}} directly).

3 lines of code changed in 1 file:

  • Makefile (+3 -1)
westram 2022-03-04 16:08 Rev.: 18960


* updated

5 lines of code changed in 1 file:

  • arb_CHANGES.txt (+5)
westram 2022-03-04 12:26 Rev.: 18959


* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958

6 lines of code changed in 1 file:

  • Makefile (+6 -10)
westram 2022-02-07 17:32 Rev.: 18925


* add excerpting targets {{{TARFILE}}} + {{{TARFILE_QUICK}}}
- use them from build scripts.

9 lines of code changed in 1 file:

  • Makefile (+9 -2)
westram 2022-02-07 17:28 Rev.: 18924


* move main targets to bottom.
* separate sections + reorder.

26 lines of code changed in 1 file:

  • Makefile (+26 -16)
westram 2022-02-07 17:25 Rev.: 18923


* move cloc section.
* use system-cloc.

20 lines of code changed in 1 file:

  • Makefile (+20 -20)
westram 2022-02-07 17:22 Rev.: 18922


* 'tarfile_quick' now depends on 'all'
* fix build scripts:
- 'build' was executed twice.
- 'clean'+'tarfile_quick' -> 'tarfile'.

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2022-02-07 17:20 Rev.: 18921


* remove obsolete targets
- 'release_quick' (relict from old release strategy).
- 'build_CTARGET' and 'reset_committed_build' + related code.

0 lines of code changed in 1 file:

  • Makefile (-15)
westram 2022-02-07 16:11 Rev.: 18920


* targets 'all' + 'rebuild' failed to report error since r18917
- fixed by adding 'false' to failing else branch
* remove recursive target 'logwrap_target'
- caused to many extra error lines **after** excerpt - renders the whole idea useless.
* instead
- add separate extracting targets for 'all' + 'rebuild' (ALL + REBUILD)
- store needed code in variables to DRY it
* reduce size of excerpt by 2 lines (which get printed after excerpt in case of failure). change header line.
* add decription for targets ALL + REBUILD

18 lines of code changed in 1 file:

  • Makefile (+18 -25)
westram 2022-02-07 16:01 Rev.: 18919


* fix indentation.
* do not print date on separator when showing help.

38 lines of code changed in 1 file:

  • Makefile (+38 -37)
westram 2022-02-04 17:51 Rev.: 18917


* add target 'logwrap_target' (allows to wrap any target).
- wrap targets 'all' + 'rebuild'.
* document possibility for silent builds.
* pass name of logfile to script + refer to log in header.
* reserve space for header line.

25 lines of code changed in 1 file:

  • Makefile (+25 -10)
westram 2022-02-03 12:48 Rev.: 18916


* filter error-messages from failed {{{make all}}} and dump at bottom
* log of last build remains in {{{build.log}}}

17 lines of code changed in 2 files:

  • .gitignore (+3 -2), Makefile (+14 -1)
westram 2022-02-01 17:03 Rev.: 18912


* target 'patch' always patches versus svn.

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2022-02-01 16:48 Rev.: 18911


* partial merge from 'stable' into 'trunk'
* adds: [18908/branches/stable]

4 lines of code changed in 1 file:

  • arb_CHANGES.txt (+4)
westram 2022-01-29 15:33 Rev.: 18907


* partial merge from 'stable' into 'trunk'
* adds: log:branches/stable@18903:18906

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2021-12-20 18:44 Rev.: 18883


* reintegrates 'nds' into 'trunk'
- fixes #841
* adds: log:branches/nds@18843:18882

9 lines of code changed in 1 file:

  • arb_CHANGES.txt (+9 -2)
westram 2021-12-19 19:14 Rev.: 18875


* ARB_GDE depends on 'menus' (fix failing 'rebuild'; broken by [18866])

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2021-11-14 13:18 Rev.: 18842


* allow conditional build of OPENMP version of {{{FastTree}}}
- tweak preprocessor: allow to {{{#define}}} via CLI.
- globally define whether OPENMP shall be used
* export to submakefiles.
* disable under OSX
- capability to build OPENMP binary depends on compiler
- LLVM/Clang 3.7 required
- forward {{{USE_OPENMP}}} into preprocessor.
- in fasttree.menu: when not defined {{{USE_OPENMP}}} -> skip MP option from GUI + hardcode binary.
- conditionally build OPENMP binary depending on {{{USE_OPENMP}}}.

7 lines of code changed in 1 file:

  • Makefile (+7)
westram 2021-11-10 15:36 Rev.: 18839


* upgrade {{{FastTree}}} to version 2.1.11
- cleanup: define flags and use make variables.
- specify fasttree version in help.
- update changelog.

4 lines of code changed in 1 file:

  • arb_CHANGES.txt (+4 -1)
westram 2021-10-10 09:33 Rev.: 18781


* reintegrates 'help' into 'trunk'
- relocate help sources
* adds: log:branches/help@18763:18780

0 lines of code changed in 1 file:

  • arb_OS_X.txt (-1)
westram 2021-09-17 13:44 Rev.: 18735


* fix another obsolete URL

1 lines of code changed in 1 file:

  • arb_README.txt (+1 -1)
westram 2021-09-15 13:48 Rev.: 18729


* eliminate trailing whitespace from Makefiles.

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2021-09-04 10:31 Rev.: 18703


* link to ancient changes

4 lines of code changed in 1 file:

  • arb_CHANGES.txt (+4)
westram 2021-09-02 18:28 Rev.: 18702


* full update from child 'stable' into 'trunk'
* adds: log:branches/stable@18696:18701

2 lines of code changed in 2 files:

  • README (+1 -20), arb_README.txt (+1 -1)
westram 2021-09-02 17:50 Rev.: 18700


* again add section for 'changes for next release'.

3 lines of code changed in 1 file:

  • arb_CHANGES.txt (+3)
westram 2021-09-02 16:46 Rev.: 18698


* again update arb_README.

16 lines of code changed in 1 file:

  • arb_README.txt (+16 -20)
westram 2021-09-02 09:46 Rev.: 18697


* full update from child 'stable' into 'trunk'
- merge changes done to arb-7.0 release candidate
* adds: log:branches/stable@18690:18695

148 lines of code changed in 5 files:

  • arb_CHANGES.txt (+1 -1), arb_INSTALL.txt (+11 -4), arb_LICENSE.txt (+20 -22), arb_README.txt (+12 -28), arb_install.sh (+104 -73)
westram 2021-08-26 18:03 Rev.: 18687


* whitespace

1 lines of code changed in 1 file:

  • arb_CHANGES.txt (+1 -1)

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