StatSVN - Directory [root]

[root]

AISC (16 files, 3904 lines)

AISC_COM (1 files, 16 lines)

AISC (8 files, 2077 lines)

C (15 files, 2740 lines)

AISC_MKPTPS (4 files, 1872 lines)

ALEIO (0 files, 0 lines)

ALIV3 (0 files, 0 lines)

ARBDB (85 files, 45545 lines)

EXAMPLES (0 files, 0 lines)

ARBDB2 (0 files, 0 lines)

ARBDBPP (0 files, 0 lines)

ARBDBS (0 files, 0 lines)

ARBDB_COMPRESS (0 files, 0 lines)

ARB_GDE (16 files, 4032 lines)

AWDEMO (0 files, 0 lines)

AWT (32 files, 12298 lines)

AWTC (6 files, 1046 lines)

AWTI (10 files, 3131 lines)

BERGEY (0 files, 0 lines)

BINDEP (37 files, 171 lines)

BINDINGS (2 files, 267 lines)

PERL (4 files, 1028 lines)

PYTHON (4 files, 147 lines)

BUGEX (1 files, 188 lines)

CAT (0 files, 0 lines)

CHIP (0 files, 0 lines)

CONSENSUS_TREE (16 files, 3452 lines)

CONVERTALN (36 files, 6593 lines)

CORE (50 files, 9447 lines)

DBSERVER (3 files, 562 lines)

DIST (19 files, 7364 lines)

DUMMYINC (0 files, 0 lines)

EDIT (0 files, 0 lines)

EDIT4 (51 files, 28730 lines)

EISPACK (7 files, 29478 lines)

GDE (2 files, 145 lines)

AxML (5 files, 5977 lines)

CLUSTAL (13 files, 4954 lines)

CLUSTALW (33 files, 21348 lines)

CORE (0 files, 0 lines)

FASTDNAML (7 files, 6447 lines)

FASTTREE (3 files, 10348 lines)

HGL_SRC (0 files, 0 lines)

LOOPTOOL (0 files, 0 lines)

MAFFT (1 files, 55 lines)

mafft-7.053-without-extensions (0 files, 0 lines)

core (0 files, 0 lines)

scripts (0 files, 0 lines)

mafft-7.055-with-extensions (4 files, 309 lines)

core (90 files, 75630 lines)

extensions (3 files, 72 lines)

mxscarna_src (21 files, 6911 lines)

probconsRNA (20 files, 7594 lines)

vienna (6 files, 11842 lines)

MOLPHY (0 files, 0 lines)

doc (0 files, 0 lines)

utl (0 files, 0 lines)

MUSCLE (2 files, 45 lines)

src (190 files, 34747 lines)

unused (3 files, 548 lines)

MrBAYES (1 files, 45 lines)

mrbayes_3.2.1 (31 files, 114639 lines)

PHYLIP (66 files, 71352 lines)

doc (42 files, 21478 lines)

PHYML (22 files, 15180 lines)

PHYML20130708 (2 files, 64 lines)

phyml (18 files, 22761 lines)

bin (0 files, 0 lines)

doc (17 files, 24532 lines)

examples (5 files, 1255 lines)

lg4x (5 files, 142 lines)

src (68 files, 78797 lines)

PROBCONS (2 files, 31 lines)

probcons (17 files, 6323 lines)

RAxML (31 files, 72525 lines)

RAxML8 (5 files, 702 lines)

SATIVA (5 files, 493 lines)

sativa (3 files, 1494 lines)

epac (8 files, 2380 lines)

ete2 (1 files, 185 lines)

SUPPORT (10 files, 2584 lines)

TREEPUZZLE (6 files, 854 lines)

data (0 files, 0 lines)

doc (3 files, 1653 lines)

src (18 files, 17676 lines)

GDEHELP (11 files, 879 lines)

DATA_FILES (0 files, 0 lines)

FASTA (0 files, 0 lines)

GENBANK (1 files, 1500 lines)

MATRIX (9 files, 258 lines)

HELP_PLAIN (3 files, 135 lines)

HELP_WRITTEN (12 files, 849 lines)

MENUS (20 files, 2084 lines)

PHYLIP (0 files, 0 lines)

GENOM (17 files, 5480 lines)

GENOM_IMPORT (18 files, 2809 lines)

GFX (2 files, 1079 lines)

GL (1 files, 61 lines)

glAW (10 files, 1498 lines)

glpng (4 files, 716 lines)

HEADERLIBS (7 files, 206 lines)

HELP_SOURCE (16 files, 3820 lines)

genhelp (6 files, 200 lines)

oldhelp (0 files, 0 lines)

prompt (0 files, 0 lines)

seer (0 files, 0 lines)

source (3 files, 280 lines)

ISLAND_HOPPING (12 files, 2102 lines)

JAVALIB (0 files, 0 lines)

MERGE (16 files, 5899 lines)

MULTI_PROBE (21 files, 5996 lines)

NALIGNER (26 files, 7903 lines)

NAMES (4 files, 1536 lines)

NAMES_COM (8 files, 297 lines)

NIELS_F77 (0 files, 0 lines)

NTREE (44 files, 19273 lines)

ORS_CGI (0 files, 0 lines)

ORS_COM (0 files, 0 lines)

ORS_SERVER (0 files, 0 lines)

PARSIMONY (19 files, 8892 lines)

PERL2ARB (11 files, 1485 lines)

PERLTOOLS (3 files, 1095 lines)

PERL_SCRIPTS (0 files, 0 lines)

ACI (1 files, 30 lines)

ARBTOOLS (2 files, 661 lines)

DOCUMENTED (0 files, 0 lines)

IFTHELP (4 files, 254 lines)

TESTS (2 files, 78 lines)

BIOPERL (2 files, 119 lines)

GENERAL (1 files, 99 lines)

GENOME (3 files, 452 lines)

IFTHELP (0 files, 0 lines)

MACROS (1 files, 158 lines)

MAUS (0 files, 0 lines)

SAI (2 files, 159 lines)

SPECIES (4 files, 717 lines)

lib (1 files, 80 lines)

test (5 files, 212 lines)

PGT (0 files, 0 lines)

xslt (0 files, 0 lines)

PHYLO (11 files, 2152 lines)

PRIMER_DESIGN (19 files, 2980 lines)

PROBE (25 files, 10725 lines)

PROBE_COM (8 files, 446 lines)

PROBE_DESIGN (11 files, 6543 lines)

PROBE_SERVER (0 files, 0 lines)

PROBE_GROUP (0 files, 0 lines)

PROBE_GROUP_DESIGN (0 files, 0 lines)

TREE_MERGE (0 files, 0 lines)

WORKER (0 files, 0 lines)

PROBE_SET (32 files, 6865 lines)

PROBE_WEB (0 files, 0 lines)

CLIENT (0 files, 0 lines)

SERVER (0 files, 0 lines)

READSEQ (9 files, 5275 lines)

RNA3D (20 files, 4634 lines)

Attic (0 files, 0 lines)

OPENGL (0 files, 0 lines)

data (0 files, 0 lines)

images (0 files, 0 lines)

RNACMA (8 files, 1574 lines)

SECEDIT (28 files, 8524 lines)

SEER (0 files, 0 lines)

SEQ_QUALITY (12 files, 2454 lines)

SERVERCNTRL (4 files, 560 lines)

SH (33 files, 2380 lines)

SL (2 files, 95 lines)

ALILINK (7 files, 2367 lines)

ALIVIEW (4 files, 172 lines)

AP_TREE (8 files, 2370 lines)

ARB_TREE (4 files, 564 lines)

AW_HELIX (4 files, 358 lines)

AW_NAME (5 files, 1061 lines)

CB (7 files, 1126 lines)

CONSENSUS (3 files, 1730 lines)

DB_QUERY (5 files, 3015 lines)

DB_SCANNER (4 files, 800 lines)

DB_UI (5 files, 2061 lines)

FAST_ALIGNER (8 files, 5857 lines)

FILE_BUFFER (0 files, 0 lines)

FILTER (6 files, 901 lines)

FILTSEQEXP (3 files, 649 lines)

GROUP_SEARCH (3 files, 4170 lines)

GUI_ALIVIEW (9 files, 1346 lines)

HELIX (6 files, 806 lines)

INSDEL (2 files, 2366 lines)

ITEMS (10 files, 1731 lines)

ITEM_SHADER (5 files, 2390 lines)

LOCATION (4 files, 611 lines)

MACROS (10 files, 1867 lines)

MATRIX (4 files, 317 lines)

NDS (3 files, 1224 lines)

NEIGHBOURJOIN (5 files, 562 lines)

PRONUC (8 files, 2762 lines)

PTCLEAN (4 files, 256 lines)

PVP (2 files, 484 lines)

QUERY (3 files, 666 lines)

REFENTRIES (4 files, 526 lines)

REGEXPR (4 files, 365 lines)

ROOTED_TREE (0 files, 0 lines)

SAICALC (3 files, 2444 lines)

SEQIO (5 files, 1210 lines)

SEQUENCE (10 files, 1751 lines)

TRANSLATE (4 files, 339 lines)

TREEDISP (10 files, 7395 lines)

TREE_ADMIN (4 files, 345 lines)

TREE_READ (5 files, 1230 lines)

TREE_WRITE (5 files, 615 lines)

XFERGUI (2 files, 1293 lines)

XFERSET (3 files, 2157 lines)

SOURCE_TOOLS (63 files, 10467 lines)

COMPILE_COMPAT (4 files, 129 lines)

docs (1 files, 79 lines)

refactor (2 files, 32 lines)

release (2 files, 407 lines)

STAT (9 files, 2153 lines)

TEMPLATES (46 files, 8290 lines)

TEST (0 files, 0 lines)

TESTAWT (0 files, 0 lines)

TESTVECTORFONT (0 files, 0 lines)

TOOLS (28 files, 12341 lines)

TREEGEN (17 files, 1454 lines)

TREE_COMPRESS (0 files, 0 lines)

TRS (0 files, 0 lines)

UNIT_TESTER (24 files, 6085 lines)

flags (1 files, 2 lines)

run (41 files, 18673 lines)

consense (0 files, 0 lines)

1 (7 files, 475 lines)

2 (5 files, 894 lines)

3 (4 files, 1543 lines)

4 (3 files, 146 lines)

6 (1 files, 49 lines)

diff (4 files, 72 lines)

display (25 files, 17249 lines)

distance (5 files, 151 lines)

fakehome (0 files, 0 lines)

general (6 files, 90 lines)

help (3 files, 933 lines)

homefake (0 files, 0 lines)

.arb_prop (1 files, 1 lines)

impexp (39 files, 4469 lines)

pars (22 files, 828 lines)

pvp (4 files, 63 lines)

tools (23 files, 475 lines)

trees (1 files, 27 lines)

xsub (4 files, 511 lines)

sockets (0 files, 0 lines)

valgrind (2 files, 179 lines)

WETC (3 files, 114 lines)

WINDOW (75 files, 26118 lines)

XML (4 files, 499 lines)

XML_IMPORT (0 files, 0 lines)

IMP_TREE (0 files, 0 lines)

bin (2 files, 216 lines)

doc (1 files, 85 lines)

etc (6 files, 5366 lines)

fig2dev (0 files, 0 lines)

dev (0 files, 0 lines)

lib (8 files, 12081 lines)

BUGS (2 files, 69 lines)

addlibs (1 files, 14 lines)

arb_default (7 files, 694 lines)

desktop (4 files, 21 lines)

dtd (2 files, 92 lines)

export (14 files, 130 lines)

gde (2 files, 25 lines)

icons (0 files, 0 lines)

import (9 files, 680 lines)

nonformats (7 files, 783 lines)

inputMasks (9 files, 343 lines)

macros (4 files, 126 lines)

.checks (3 files, 675 lines)

ARB (0 files, 0 lines)

SEQ_DATA (1 files, 111 lines)

motifHack (3 files, 322 lines)

pixmaps (0 files, 0 lines)

nas (3 files, 18 lines)

pictures (102 files, 3718 lines)

PARS (0 files, 0 lines)

awt (19 files, 599 lines)

awtc (2 files, 47 lines)

consensus (2 files, 368 lines)

cpro (2 files, 72 lines)

demo (0 files, 0 lines)

edit4 (16 files, 819 lines)

etc (0 files, 0 lines)

faligner (3 files, 139 lines)

findcorr (0 files, 0 lines)

merge (12 files, 473 lines)

pars (3 files, 184 lines)

phylo (3 files, 67 lines)

query (5 files, 133 lines)

seer (0 files, 0 lines)

unused (0 files, 0 lines)

demo (0 files, 0 lines)

findcorr (0 files, 0 lines)

window (1 files, 24 lines)

pixmaps (84 files, 3509 lines)

edit (20 files, 602 lines)

unused (0 files, 0 lines)

icons (7 files, 273 lines)

unused (0 files, 0 lines)

merge (1 files, 48 lines)

pgt (0 files, 0 lines)

print (6 files, 239 lines)

unused (0 files, 0 lines)

seer (0 files, 0 lines)

unused (0 files, 0 lines)

protein_2nd_structure (0 files, 0 lines)

rna3d (5 files, 4617 lines)

images (17 files, 0 lines)

sellists (9 files, 98 lines)

submit (3 files, 1061 lines)

ptpan (0 files, 0 lines)

util (18 files, 1579 lines)

Author	Changes	Lines of Code	Lines per Change
Totals	1145 (100.0%)	15988 (100.0%)	13.9
westram	1038 (90.7%)	14694 (91.9%)	14.1
oldcode	9 (0.8%)	760 (4.8%)	84.4
epruesse	33 (2.9%)	281 (1.8%)	8.5
boehnel	4 (0.3%)	75 (0.5%)	18.7
yadhu	17 (1.5%)	74 (0.5%)	4.3
meierh	12 (1.0%)	24 (0.2%)	2.0
richter	4 (0.3%)	19 (0.1%)	4.7
baderk	17 (1.5%)	18 (0.1%)	1.0
spanfeln	1 (0.1%)	11 (0.1%)	11.0
foerster	2 (0.2%)	11 (0.1%)	5.5
arb_build	1 (0.1%)	8 (0.1%)	8.0
aboeckma	2 (0.2%)	5 (0.0%)	2.5
jobb	1 (0.1%)	4 (0.0%)	4.0
artemov	2 (0.2%)	2 (0.0%)	1.0
littschw	1 (0.1%)	1 (0.0%)	1.0
lai	1 (0.1%)	1 (0.0%)	1.0

Most Recent Commits

westram 2021-12-20 17:44 Rev.: 18883

* reintegrates 'nds' into 'trunk'
- fixes #841
* adds: log:branches/nds@18843:18882

9 lines of code changed in 1 file:

arb_CHANGES.txt (+9 -2)

westram 2021-12-19 18:14 Rev.: 18875

* ARB_GDE depends on 'menus' (fix failing 'rebuild'; broken by [18866])

1 lines of code changed in 1 file:

Makefile (+1 -1)

westram 2021-11-14 12:18 Rev.: 18842

* allow conditional build of OPENMP version of {{{FastTree}}}
- tweak preprocessor: allow to {{{#define}}} via CLI.
- globally define whether OPENMP shall be used
* export to submakefiles.
* disable under OSX
- capability to build OPENMP binary depends on compiler
- LLVM/Clang 3.7 required
- forward {{{USE_OPENMP}}} into preprocessor.
- in fasttree.menu: when not defined {{{USE_OPENMP}}} -> skip MP option from GUI + hardcode binary.
- conditionally build OPENMP binary depending on {{{USE_OPENMP}}}.

7 lines of code changed in 1 file:

Makefile (+7)

westram 2021-11-10 14:36 Rev.: 18839

* upgrade {{{FastTree}}} to version 2.1.11
- cleanup: define flags and use make variables.
- specify fasttree version in help.
- update changelog.

4 lines of code changed in 1 file:

arb_CHANGES.txt (+4 -1)

westram 2021-10-10 08:33 Rev.: 18781

* reintegrates 'help' into 'trunk'
- relocate help sources
* adds: log:branches/help@18763:18780

0 lines of code changed in 1 file:

arb_OS_X.txt (-1)

westram 2021-09-17 12:44 Rev.: 18735

* fix another obsolete URL

1 lines of code changed in 1 file:

arb_README.txt (+1 -1)

westram 2021-09-15 12:48 Rev.: 18729

* eliminate trailing whitespace from Makefiles.

1 lines of code changed in 1 file:

Makefile (+1 -1)

westram 2021-09-04 09:31 Rev.: 18703

* link to ancient changes

4 lines of code changed in 1 file:

arb_CHANGES.txt (+4)

westram 2021-09-02 17:28 Rev.: 18702

* full update from child 'stable' into 'trunk'
* adds: log:branches/stable@18696:18701

2 lines of code changed in 2 files:

README (+1 -20), arb_README.txt (+1 -1)

westram 2021-09-02 16:50 Rev.: 18700

* again add section for 'changes for next release'.

3 lines of code changed in 1 file:

arb_CHANGES.txt (+3)

westram 2021-09-02 15:46 Rev.: 18698

* again update arb_README.

16 lines of code changed in 1 file:

arb_README.txt (+16 -20)

westram 2021-09-02 08:46 Rev.: 18697

* full update from child 'stable' into 'trunk'
- merge changes done to arb-7.0 release candidate
* adds: log:branches/stable@18690:18695

148 lines of code changed in 5 files:

arb_CHANGES.txt (+1 -1), arb_INSTALL.txt (+11 -4), arb_LICENSE.txt (+20 -22), arb_README.txt (+12 -28), arb_install.sh (+104 -73)

westram 2021-08-26 17:03 Rev.: 18687

* whitespace

1 lines of code changed in 1 file:

arb_CHANGES.txt (+1 -1)

westram 2021-08-26 16:55 Rev.: 18686

* change references to (never released) arb-6.1 -> arb-7.0

2 lines of code changed in 1 file:

arb_CHANGES.txt (+2 -2)

westram 2021-08-26 16:42 Rev.: 18684

* performed changes are for release of arb 7.0.
* mention performed tickets in logged changes.
* add note howto retrieve details about specified tickets.
* mention missing changes.

43 lines of code changed in 1 file:

arb_CHANGES.txt (+43 -27)

westram 2021-08-26 16:32 Rev.: 18682

* partial merge from 'stable' into 'trunk'
- adds changelog for arb 6.0.6
* adds: [15216/branches/stable]

5 lines of code changed in 1 file:

arb_CHANGES.txt (+5)

westram 2021-06-12 10:56 Rev.: 18656

* updated package requirements (based on packages reported as required on debian 10).

19 lines of code changed in 1 file:

arb_INSTALL.txt (+19 -9)

westram 2021-05-31 15:40 Rev.: 18655

* usage of libglut is no longer system dependent (thx to Jan).

1 lines of code changed in 1 file:

Makefile (+1 -5)

westram 2020-11-10 17:49 Rev.: 18636

* updated change log (#449)

1 lines of code changed in 1 file:

arb_CHANGES.txt (+1)

westram 2020-11-10 16:24 Rev.: 18634

* reintegrates 'root' into 'trunk'
- implements #449
* adds: log:branches/root@18451:18633

3 lines of code changed in 1 file:

Makefile (+3 -1)

westram 2020-04-23 09:58 Rev.: 18441

* use trap exit.
* deny some characters in installation path (e.g. spaces, quotes or backticks).

17 lines of code changed in 1 file:

arb_install.sh (+17 -3)

westram 2020-04-01 16:21 Rev.: 18426

* reintegrates 'unittest' into 'trunk'
* adds: log:branches/unittest@18363:18425

169 lines of code changed in 2 files:

Makefile (+152 -60), config.makefile.template (+17 -17)

westram 2020-03-16 14:23 Rev.: 18385

* disable final warnings for gcc 8.4 (FUBAR).
* remove useless code (already active for gcc>=5).

3 lines of code changed in 1 file:

Makefile (+3 -5)

westram 2020-03-13 11:43 Rev.: 18379

* accept gcc 9.3.0
- vectorizations failing with 9.1 and 9.2 still fail with 9.3.

1 lines of code changed in 1 file:

Makefile (+1 -1)

westram 2020-03-05 16:38 Rev.: 18361

* use prefix 'take' for descends into UNIT_TESTER.
* fix some whitespace.

6 lines of code changed in 1 file:

Makefile (+6 -7)

westram 2020-03-05 16:34 Rev.: 18360

* tested + accept gcc 8.4.0

1 lines of code changed in 1 file:

Makefile (+1 -1)

westram 2020-03-02 18:16 Rev.: 18342

* improve errors shown when trying to build while no gcc is installed.
* add 'patch' to required build tools.
* updated list of compile requirements according to SUSE leap 15.1

12 lines of code changed in 1 file:

arb_INSTALL.txt (+12 -6)

westram 2020-02-26 18:36 Rev.: 18337

* partial merge from 'fix' into 'trunk'
- fix some warnings
- remove obsolete script
* adds: log:branches/fix@18331:18332

7 lines of code changed in 1 file:

Makefile (+7 -1)

westram 2020-02-25 14:57 Rev.: 18322

* check symbol listings (generated for unittests) for unwanted duplicated symbols.
* be quiet if no duplicate detected.

1 lines of code changed in 1 file:

Makefile (+1)

westram 2020-02-25 11:16 Rev.: 18321

* fix linker flag (to warn about duplicate variable definitions) for OSX.
* move other decls of compiler/linker flags.

16 lines of code changed in 1 file:

Makefile (+16 -10)

westram 2020-02-24 18:26 Rev.: 18320

* warn about common symbols.

2 lines of code changed in 1 file:

Makefile (+2)

westram 2020-02-24 18:17 Rev.: 18317

* update change log (#730)

1 lines of code changed in 1 file:

arb_CHANGES.txt (+1)

westram 2020-02-24 18:14 Rev.: 18316

* update build requirements.
* remove 32bit workaround.

3 lines of code changed in 1 file:

arb_INSTALL.txt (+3 -6)

westram 2020-02-21 13:07 Rev.: 18311

* reintegrates 'saicalc' into 'trunk'
- implements #730
* adds: log:branches/saicalc@18141:18310

3 lines of code changed in 1 file:

Makefile (+3)

westram 2019-11-18 12:15 Rev.: 18213

* added gcc 7.5

1 lines of code changed in 1 file:

Makefile (+1 -1)

westram 2019-10-10 18:16 Rev.: 18168

* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18159:18167

4 lines of code changed in 1 file:

Makefile (+4 -1)

westram 2019-10-07 14:01 Rev.: 18148

* update

1 lines of code changed in 1 file:

arb_CHANGES.txt (+1)

westram 2019-10-03 09:08 Rev.: 18140

* full update from child 'fix' into 'trunk'
- improve target 'cleanRelinkable'
- fix crash in inotify file tracker (occurred when moving a tracked file)
- minor tweaks for fts
* adds: log:branches/fix@18131:18139

3 lines of code changed in 1 file:

Makefile (+3 -1)

westram 2019-10-01 09:30 Rev.: 18128

* reintegrates 'fix' into 'trunk'
- effectively merges [17619]
* adds: log:branches/fix@17596,17618:18127

49 lines of code changed in 1 file:

arb_README.txt (+49 -34)

westram 2019-09-27 10:26 Rev.: 18121

- doc target 'cleanRelinkable'

1 lines of code changed in 1 file:

Makefile (+1)

(975 more)

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Most Recent Commits