Directory [root]

Directory Created:
2000-11-23 10:41
Total Files:
17
Deleted Files:
22
Lines of Code:
7472

[root]
    directory in repo AISC (16 files, 3904 lines)
    directory in repo AISC_COM (1 files, 16 lines)
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    directory in repo CONSENSUS_TREE (13 files, 2235 lines)
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    directory in repo EDIT4 (52 files, 28782 lines)
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    directory in repo GDE (2 files, 145 lines)
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        directory in repo CLUSTAL (13 files, 4954 lines)
        directory in repo CLUSTALW (33 files, 21348 lines)
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                directory in repo core (90 files, 75630 lines)
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                        directory in repo probconsRNA (20 files, 7594 lines)
                        directory in repo vienna (6 files, 11842 lines)
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            directory in repo src (190 files, 34747 lines)
                directory in repo unused (3 files, 548 lines)
        directory in repo MrBAYES (1 files, 45 lines)
            directory in repo mrbayes_3.2.1 (31 files, 114639 lines)
        directory in repo PHYLIP (66 files, 71352 lines)
            directory in repo doc (42 files, 21478 lines)
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        directory in repo PHYML20130708 (2 files, 64 lines)
            directory in repo phyml (18 files, 22761 lines)
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                directory in repo doc (17 files, 24532 lines)
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                directory in repo src (68 files, 78797 lines)
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            directory in repo probcons (17 files, 6323 lines)
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        directory in repo HELP_WRITTEN (8 files, 750 lines)
        directory in repo MENUS (19 files, 2018 lines)
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    directory in repo HEADERLIBS (7 files, 205 lines)
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        directory in repo oldhelp (344 files, 26091 lines)
            directory in repo prompt (1 files, 31 lines)
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    directory in repo MULTI_PROBE (21 files, 6008 lines)
    directory in repo NALIGNER (26 files, 7913 lines)
    directory in repo NAMES (4 files, 1535 lines)
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    directory in repo SEQ_QUALITY (12 files, 2459 lines)
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        directory in repo AP_TREE (8 files, 2375 lines)
        directory in repo ARB_TREE (4 files, 569 lines)
        directory in repo AW_HELIX (4 files, 363 lines)
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        directory in repo DB_QUERY (5 files, 3010 lines)
        directory in repo DB_SCANNER (4 files, 791 lines)
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        directory in repo GUI_ALIVIEW (9 files, 1356 lines)
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        directory in repo ITEM_SHADER (5 files, 2392 lines)
        directory in repo LOCATION (4 files, 611 lines)
        directory in repo MACROS (10 files, 1867 lines)
        directory in repo MATRIX (4 files, 336 lines)
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        directory in repo PRONUC (8 files, 2771 lines)
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        directory in repo PVP (2 files, 484 lines)
        directory in repo QUERY (3 files, 666 lines)
        directory in repo REFENTRIES (4 files, 526 lines)
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        directory in repo SEQIO (5 files, 1218 lines)
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        directory in repo TREEDISP (10 files, 7359 lines)
        directory in repo TREE_ADMIN (4 files, 345 lines)
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        directory in repo XFERGUI (2 files, 1293 lines)
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    directory in repo SOURCE_TOOLS (63 files, 10416 lines)
        directory in repo COMPILE_COMPAT (4 files, 129 lines)
        directory in repo docs (1 files, 79 lines)
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    directory in repo STAT (9 files, 2162 lines)
    directory in repo TEMPLATES (44 files, 8108 lines)
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    directory in repo TOOLS (27 files, 11973 lines)
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    directory in repo UNIT_TESTER (22 files, 5807 lines)
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        directory in repo run (39 files, 17711 lines)
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            directory in repo display (25 files, 17274 lines)
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            directory in repo general (6 files, 90 lines)
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            directory in repo impexp (39 files, 4469 lines)
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            directory in repo tools (22 files, 475 lines)
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    directory in repo etc (6 files, 5366 lines)
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    directory in repo lib (8 files, 12081 lines)
        directory in repo BUGS (2 files, 69 lines)
        directory in repo addlibs (1 files, 14 lines)
        directory in repo arb_default (7 files, 694 lines)
        directory in repo desktop (4 files, 21 lines)
        directory in repo dtd (2 files, 92 lines)
        directory in repo export (14 files, 130 lines)
        directory in repo gde (2 files, 25 lines)
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        directory in repo import (9 files, 680 lines)
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        directory in repo macros (4 files, 126 lines)
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        directory in repo pictures (96 files, 3558 lines)
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            directory in repo awt (19 files, 599 lines)
            directory in repo awtc (2 files, 46 lines)
            directory in repo consensus (2 files, 368 lines)
            directory in repo cpro (2 files, 72 lines)
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            directory in repo faligner (3 files, 139 lines)
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            directory in repo merge (12 files, 473 lines)
            directory in repo pars (3 files, 184 lines)
            directory in repo phylo (3 files, 67 lines)
            directory in repo query (5 files, 131 lines)
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        directory in repo pixmaps (84 files, 3509 lines)
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        directory in repo submit (3 files, 1061 lines)
    directory in repo ptpan (4 files, 57 lines)
    directory in repo util (18 files, 1537 lines)

Lines of Code

Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 1104 (100.0%) 15474 (100.0%) 14.0
westram 997 (90.3%) 14180 (91.6%) 14.2
oldcode 9 (0.8%) 760 (4.9%) 84.4
epruesse 33 (3.0%) 281 (1.8%) 8.5
boehnel 4 (0.4%) 75 (0.5%) 18.7
yadhu 17 (1.5%) 74 (0.5%) 4.3
meierh 12 (1.1%) 24 (0.2%) 2.0
richter 4 (0.4%) 19 (0.1%) 4.7
baderk 17 (1.5%) 18 (0.1%) 1.0
spanfeln 1 (0.1%) 11 (0.1%) 11.0
foerster 2 (0.2%) 11 (0.1%) 5.5
arb_build 1 (0.1%) 8 (0.1%) 8.0
aboeckma 2 (0.2%) 5 (0.0%) 2.5
jobb 1 (0.1%) 4 (0.0%) 4.0
artemov 2 (0.2%) 2 (0.0%) 1.0
littschw 1 (0.1%) 1 (0.0%) 1.0
lai 1 (0.1%) 1 (0.0%) 1.0

Most Recent Commits

westram 2019-10-10 18:16 Rev.: 18168


* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18159:18167

4 lines of code changed in 1 file:

  • Makefile (+4 -1)
westram 2019-10-07 14:01 Rev.: 18148


* update

1 lines of code changed in 1 file:

  • arb_CHANGES.txt (+1)
westram 2019-10-03 09:08 Rev.: 18140


* full update from child 'fix' into 'trunk'
- improve target 'cleanRelinkable'
- fix crash in inotify file tracker (occurred when moving a tracked file)
- minor tweaks for fts
* adds: log:branches/fix@18131:18139

3 lines of code changed in 1 file:

  • Makefile (+3 -1)
westram 2019-10-01 09:30 Rev.: 18128


* reintegrates 'fix' into 'trunk'
- effectively merges [17619]
* adds: log:branches/fix@17596,17618:18127

49 lines of code changed in 1 file:

  • arb_README.txt (+49 -34)
westram 2019-09-27 10:26 Rev.: 18121


- doc target 'cleanRelinkable'

1 lines of code changed in 1 file:

  • Makefile (+1)
westram 2019-09-26 17:39 Rev.: 18120


* add new target 'cleanRelinkable':
- removes libs, executables + tests to reduce size of WC (esp. in sanitized builds).
- avoid 'cleanRelinkable' causes rebuild (esp. rebuild of RaxML8).
* fix bogus-error when target 'clean' in UNIT_TESTER got called.

6 lines of code changed in 1 file:

  • Makefile (+6)
westram 2019-09-24 17:52 Rev.: 18119


* cosmetic

2 lines of code changed in 1 file:

  • Makefile (+2 -1)
westram 2019-09-24 17:28 Rev.: 18118


* disable {{{AddressSanitizer}}} for gcc 4.8.x ({{{LeakSanitizer}}} wont work, build fails on 14.04)

Note: fixed build on lorkin

2 lines of code changed in 1 file:

  • Makefile (+2 -1)
westram 2019-09-24 15:40 Rev.: 18117


* reset SANITIZE if no sanitizer survived its restricting rules

4 lines of code changed in 1 file:

  • Makefile (+4)
westram 2019-09-20 12:12 Rev.: 18104


* log change #562.

2 lines of code changed in 1 file:

  • arb_CHANGES.txt (+2 -1)
westram 2019-09-17 14:46 Rev.: 18092


* full update from child 'fts' into 'trunk'
- implements #562
* adds:
- [18091/branches/fts]
- log:branches/gui@17754:17924,17926:18090

3 lines of code changed in 1 file:

  • Makefile (+3)
westram 2019-09-17 14:13 Rev.: 18088


* reintegrates 'fts' into 'trunk'
* adds:
- log:branches/fts@17653,17655:17717,17724:18087
- [17925/branches/gui]

3 lines of code changed in 1 file:

  • Makefile (+3)
westram 2019-08-16 12:05 Rev.: 18014


* always dump missed loop vectorizations.
* if gcc regards a loop optimization as "too expensive", source requires IRRELEVANT_LOOP-comment
=> this revision fails compilation with 9.x series.

1 lines of code changed in 1 file:

  • Makefile (+1 -2)
westram 2019-08-13 12:19 Rev.: 18009


* accept gcc 9.2.0

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2019-05-27 08:49 Rev.: 17904


* workaround SuSE build problem
- for whatever reasons SuSE delivers a gcc which identifies as 7.4.1 (no such version has been released yet)
* IIRC the same did happen with gcc 5.3.1
- generally ignore subversions (in top level compiler check) for gcc-major>=5

6 lines of code changed in 1 file:

  • Makefile (+6 -1)
westram 2019-05-10 12:57 Rev.: 17877


* reintegrates 'gcc' into 'trunk'
* adds: log:branches/gcc@17850:17876

40 lines of code changed in 1 file:

  • Makefile (+40 -9)
westram 2019-04-07 09:54 Rev.: 17751


* ignore Makefile.old

1 lines of code changed in 1 file:

  • .gitignore (+1)
westram 2019-04-04 15:47 Rev.: 17742


* fix unnecessary typos.

31 lines of code changed in 1 file:

  • arb_OS_X.txt (+31 -31)
westram 2019-04-03 13:47 Rev.: 17738


* reintegrates 'config' into 'trunk'
* adds: log:branches/config@17733:17737

25 lines of code changed in 2 files:

  • Makefile (+17 -78), config.makefile.template (+8 -12)
westram 2019-04-02 17:02 Rev.: 17727


* TAGS generation: remove older temporary files

4 lines of code changed in 1 file:

  • Makefile (+4 -1)
westram 2019-03-27 10:13 Rev.: 17703


* provide stacktraces for {{{UndefinedBehaviorSanitizer}}}
- similar as done for {{{AddressSanitizer}}} and {{{LeakSanitizer}}}
- add verbose-flags to debug code that filters logfiles and rewrites stacktrace into message-format ({{{FILE:LINE: MESSAGE}}})
- fix paths of stacktraces (expand+reduce pathprefixes; trace enter/leave directory messages)

1 lines of code changed in 1 file:

  • Makefile (+1)
westram 2019-03-27 09:57 Rev.: 17701


* fix build/test of single unit
- failed to test after clean

11 lines of code changed in 1 file:

  • Makefile (+11 -9)
westram 2019-03-25 16:21 Rev.: 17696


* silence target 'tags'.

12 lines of code changed in 1 file:

  • Makefile (+12 -12)
westram 2019-03-18 18:07 Rev.: 17666


ignore leftover emacs autosave files.

1 lines of code changed in 1 file:

  • .gitignore (+1)
westram 2019-03-18 18:06 Rev.: 17665


allow to build single unit and run its tests.

use
{{{
cd $ARBHOME;setenv UNIT PROBE/PROBE; makeloc oneunit
}}}
for tcsh or
{{{
cd $ARBHOME; export UNIT=PROBE/PROBE; makeloc oneunit
}}}
for bash.

22 lines of code changed in 1 file:

  • Makefile (+22 -5)
westram 2019-03-13 10:14 Rev.: 17656


* change names of ignored patch-files

3 lines of code changed in 1 file:

  • .gitignore (+3 -6)
westram 2019-03-07 17:30 Rev.: 17651


* reintegrates 'cleanup' into 'trunk'
* adds: log:branches/cleanup@17627:17650

1 lines of code changed in 1 file:

  • .gitignore (+1)
westram 2019-03-06 12:10 Rev.: 17645


update doxygen docs:

- updated obsolete setting using "doxygen -u".
- use Helvetica font for dot-gfx generated by doxygen.
- activates conf-mode in emacs.

1701 lines of code changed in 1 file:

  • Doxyfile (+1701 -776)
westram 2019-03-04 19:39 Rev.: 17641


* reintegrates 'mix' into 'trunk'
- improve git/svn interoperability
* adds: log:branches/mix@17637:17640

3 lines of code changed in 1 file:

  • .gitignore (+3)
westram 2019-03-04 14:22 Rev.: 17634


* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

35 lines of code changed in 1 file:

  • .gitignore (new 35)
westram 2019-02-26 09:12 Rev.: 17626


- accept gcc 8.3

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
epruesse 2019-02-17 06:06 Rev.: 17625

Honor $AR env variable if set (make defaults to 'ar')

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
epruesse 2019-02-17 06:05 Rev.: 17624

Add xerces-c-dev to ubuntu build deps

1 lines of code changed in 1 file:

  • arb_UBUNTU.txt (+1)
westram 2018-12-23 11:48 Rev.: 17620


* added gcc 7.4

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-11-25 19:19 Rev.: 17618


* full update from child 'fix' into 'trunk'
- fixes undefined variables in makefiles
- fixes perl tests
* adds: log:branches/fix@17599:17617

82 lines of code changed in 1 file:

  • Makefile (+82 -43)
westram 2018-11-08 17:56 Rev.: 17602


* updated README

41 lines of code changed in 1 file:

  • arb_README.txt (+41 -37)
westram 2018-10-31 09:52 Rev.: 17593


* reintegrates 'fix' into 'trunk'
- performs #798
* adds genetic code tables (24-31)
* adds combined amino acid J (I or L)
* improved translate and/or realign
- handle optional start-/stop-codons
- improve recognition of nuc-triples containing IUPAC-codes
* error messages now always list EMBL table numbers
* adds:
- log:branches/fix@17480:17485,17491:17492,17494:17507,17509:17528,17534:17592
- log:branches/optional@17481:17568

4 lines of code changed in 2 files:

  • Makefile (+1 -1), arb_CHANGES.txt (+3 -1)
westram 2018-10-26 18:19 Rev.: 17542


* allow compilation with gcc 6.5.0

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-10-17 13:21 Rev.: 17481


- updated

2 lines of code changed in 1 file:

  • arb_CHANGES.txt (+2 -1)
westram 2018-10-02 09:08 Rev.: 17424


* fix compilation w/o config.makefile (=auto-generation from template)
- was broken by [17375]

8 lines of code changed in 1 file:

  • Makefile (+8 -6)

(940 more)

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