Directory [root]

Directory Created:
2000-11-23 11:41
Total Files:
17
Deleted Files:
22
Lines of Code:
7432

[root]
    directory in repo AISC (16 files, 3904 lines)
    directory in repo AISC_COM (1 files, 16 lines)
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        directory in repo C (15 files, 2740 lines)
    directory in repo AISC_MKPTPS (4 files, 1872 lines)
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    directory in repo CONSENSUS_TREE (13 files, 2235 lines)
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    directory in repo CORE (49 files, 9110 lines)
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                directory in repo core (90 files, 75630 lines)
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            directory in repo src (190 files, 34747 lines)
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        directory in repo MrBAYES (1 files, 45 lines)
            directory in repo mrbayes_3.2.1 (31 files, 114639 lines)
        directory in repo PHYLIP (66 files, 71352 lines)
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                directory in repo src (68 files, 78797 lines)
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    directory in repo HEADERLIBS (7 files, 205 lines)
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        directory in repo genhelp (6 files, 200 lines)
        directory in repo oldhelp (343 files, 25879 lines)
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    directory in repo MULTI_PROBE (21 files, 6008 lines)
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        directory in repo AP_TREE (8 files, 2375 lines)
        directory in repo ARB_TREE (4 files, 569 lines)
        directory in repo AW_HELIX (4 files, 363 lines)
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        directory in repo LOCATION (4 files, 611 lines)
        directory in repo MACROS (10 files, 1867 lines)
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        directory in repo REFENTRIES (4 files, 526 lines)
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        directory in repo TREE_ADMIN (4 files, 345 lines)
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    directory in repo SOURCE_TOOLS (62 files, 10124 lines)
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    directory in repo lib (8 files, 12081 lines)
        directory in repo BUGS (2 files, 69 lines)
        directory in repo addlibs (1 files, 14 lines)
        directory in repo arb_default (7 files, 694 lines)
        directory in repo desktop (4 files, 21 lines)
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            directory in repo merge (12 files, 488 lines)
            directory in repo pars (3 files, 177 lines)
            directory in repo phylo (3 files, 60 lines)
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        directory in repo submit (3 files, 1061 lines)
    directory in repo ptpan (4 files, 57 lines)
    directory in repo util (18 files, 1533 lines)

Lines of Code

Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 1090 (100.0%) 15392 (100.0%) 14.1
westram 983 (90.2%) 14098 (91.6%) 14.3
oldcode 9 (0.8%) 760 (4.9%) 84.4
epruesse 33 (3.0%) 281 (1.8%) 8.5
boehnel 4 (0.4%) 75 (0.5%) 18.7
yadhu 17 (1.6%) 74 (0.5%) 4.3
meierh 12 (1.1%) 24 (0.2%) 2.0
richter 4 (0.4%) 19 (0.1%) 4.7
baderk 17 (1.6%) 18 (0.1%) 1.0
spanfeln 1 (0.1%) 11 (0.1%) 11.0
foerster 2 (0.2%) 11 (0.1%) 5.5
arb_build 1 (0.1%) 8 (0.1%) 8.0
aboeckma 2 (0.2%) 5 (0.0%) 2.5
jobb 1 (0.1%) 4 (0.0%) 4.0
artemov 2 (0.2%) 2 (0.0%) 1.0
littschw 1 (0.1%) 1 (0.0%) 1.0
lai 1 (0.1%) 1 (0.0%) 1.0

Most Recent Commits

westram 2019-05-27 09:49 Rev.: 17904


* workaround SuSE build problem
- for whatever reasons SuSE delivers a gcc which identifies as 7.4.1 (no such version has been released yet)
* IIRC the same did happen with gcc 5.3.1
- generally ignore subversions (in top level compiler check) for gcc-major>=5

6 lines of code changed in 1 file:

  • Makefile (+6 -1)
westram 2019-05-10 13:57 Rev.: 17877


* reintegrates 'gcc' into 'trunk'
* adds: log:branches/gcc@17850:17876

40 lines of code changed in 1 file:

  • Makefile (+40 -9)
westram 2019-04-07 10:54 Rev.: 17751


* ignore Makefile.old

1 lines of code changed in 1 file:

  • .gitignore (+1)
westram 2019-04-04 16:47 Rev.: 17742


* fix unnecessary typos.

31 lines of code changed in 1 file:

  • arb_OS_X.txt (+31 -31)
westram 2019-04-03 14:47 Rev.: 17738


* reintegrates 'config' into 'trunk'
* adds: log:branches/config@17733:17737

25 lines of code changed in 2 files:

  • Makefile (+17 -78), config.makefile.template (+8 -12)
westram 2019-04-02 18:02 Rev.: 17727


* TAGS generation: remove older temporary files

4 lines of code changed in 1 file:

  • Makefile (+4 -1)
westram 2019-03-27 11:13 Rev.: 17703


* provide stacktraces for {{{UndefinedBehaviorSanitizer}}}
- similar as done for {{{AddressSanitizer}}} and {{{LeakSanitizer}}}
- add verbose-flags to debug code that filters logfiles and rewrites stacktrace into message-format ({{{FILE:LINE: MESSAGE}}})
- fix paths of stacktraces (expand+reduce pathprefixes; trace enter/leave directory messages)

1 lines of code changed in 1 file:

  • Makefile (+1)
westram 2019-03-27 10:57 Rev.: 17701


* fix build/test of single unit
- failed to test after clean

11 lines of code changed in 1 file:

  • Makefile (+11 -9)
westram 2019-03-25 17:21 Rev.: 17696


* silence target 'tags'.

12 lines of code changed in 1 file:

  • Makefile (+12 -12)
westram 2019-03-18 19:07 Rev.: 17666


ignore leftover emacs autosave files.

1 lines of code changed in 1 file:

  • .gitignore (+1)
westram 2019-03-18 19:06 Rev.: 17665


allow to build single unit and run its tests.

use
{{{
cd $ARBHOME;setenv UNIT PROBE/PROBE; makeloc oneunit
}}}
for tcsh or
{{{
cd $ARBHOME; export UNIT=PROBE/PROBE; makeloc oneunit
}}}
for bash.

22 lines of code changed in 1 file:

  • Makefile (+22 -5)
westram 2019-03-13 11:14 Rev.: 17656


* change names of ignored patch-files

3 lines of code changed in 1 file:

  • .gitignore (+3 -6)
westram 2019-03-07 18:30 Rev.: 17651


* reintegrates 'cleanup' into 'trunk'
* adds: log:branches/cleanup@17627:17650

1 lines of code changed in 1 file:

  • .gitignore (+1)
westram 2019-03-06 13:10 Rev.: 17645


update doxygen docs:

- updated obsolete setting using "doxygen -u".
- use Helvetica font for dot-gfx generated by doxygen.
- activates conf-mode in emacs.

1701 lines of code changed in 1 file:

  • Doxyfile (+1701 -776)
westram 2019-03-04 20:39 Rev.: 17641


* reintegrates 'mix' into 'trunk'
- improve git/svn interoperability
* adds: log:branches/mix@17637:17640

3 lines of code changed in 1 file:

  • .gitignore (+3)
westram 2019-03-04 15:22 Rev.: 17634


* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

35 lines of code changed in 1 file:

  • .gitignore (new 35)
westram 2019-02-26 10:12 Rev.: 17626


- accept gcc 8.3

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
epruesse 2019-02-17 07:06 Rev.: 17625

Honor $AR env variable if set (make defaults to 'ar')

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
epruesse 2019-02-17 07:05 Rev.: 17624

Add xerces-c-dev to ubuntu build deps

1 lines of code changed in 1 file:

  • arb_UBUNTU.txt (+1)
westram 2018-12-23 12:48 Rev.: 17620


* added gcc 7.4

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-11-25 20:19 Rev.: 17618


* full update from child 'fix' into 'trunk'
- fixes undefined variables in makefiles
- fixes perl tests
* adds: log:branches/fix@17599:17617

82 lines of code changed in 1 file:

  • Makefile (+82 -43)
westram 2018-11-08 18:56 Rev.: 17602


* updated README

41 lines of code changed in 1 file:

  • arb_README.txt (+41 -37)
westram 2018-10-31 10:52 Rev.: 17593


* reintegrates 'fix' into 'trunk'
- performs #798
* adds genetic code tables (24-31)
* adds combined amino acid J (I or L)
* improved translate and/or realign
- handle optional start-/stop-codons
- improve recognition of nuc-triples containing IUPAC-codes
* error messages now always list EMBL table numbers
* adds:
- log:branches/fix@17480:17485,17491:17492,17494:17507,17509:17528,17534:17592
- log:branches/optional@17481:17568

4 lines of code changed in 2 files:

  • Makefile (+1 -1), arb_CHANGES.txt (+3 -1)
westram 2018-10-26 19:19 Rev.: 17542


* allow compilation with gcc 6.5.0

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-10-17 14:21 Rev.: 17481


- updated

2 lines of code changed in 1 file:

  • arb_CHANGES.txt (+2 -1)
westram 2018-10-02 10:08 Rev.: 17424


* fix compilation w/o config.makefile (=auto-generation from template)
- was broken by [17375]

8 lines of code changed in 1 file:

  • Makefile (+8 -6)
westram 2018-09-18 10:53 Rev.: 17375


* make sure that either {{{DARWIN=1}}} or {{{LINUX=1}}} in config.makefile

6 lines of code changed in 1 file:

  • Makefile (+6)
westram 2018-09-13 10:24 Rev.: 17367


* allow parallel calls to 'make tags'
- uses build-unique temporary files to avoid conflicts

11 lines of code changed in 1 file:

  • Makefile (+11 -10)
westram 2018-09-13 10:19 Rev.: 17366


* provide a build specific ID (ARBBID)
- different in each call to make
- constant in recursive calls (and submakefiles)

9 lines of code changed in 1 file:

  • Makefile (+9)
westram 2018-09-13 09:43 Rev.: 17365


* svn-ignore temporary files used by target 'tags' (solves problems with some of my scripts)

2 lines of code changed in 1 file:

  • Makefile (+2 -2)
westram 2018-09-02 18:44 Rev.: 17345


* updated

3 lines of code changed in 1 file:

  • arb_CHANGES.txt (+3)
westram 2018-08-30 17:24 Rev.: 17342


* reintegrates 'group' into 'trunk'
- implements #780
* adds: log:branches/group@17162:17190,17261:17341

27 lines of code changed in 1 file:

  • Makefile (+27 -19)
westram 2018-07-27 08:44 Rev.: 17277


* activate {{{-Wmultistatement-macros}}} for gcc 8++

16 lines of code changed in 1 file:

  • Makefile (+16 -13)
westram 2018-07-26 15:57 Rev.: 17272


* tested and accepted gcc 8.2

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-06-25 10:57 Rev.: 17114


* only refer to {{{/etc/bash.bashrc}}} (for global alias)
* add howto-edit-global-bashrc for unintended sysadmins :)

7 lines of code changed in 1 file:

  • arb_install.sh (+7 -3)
westram 2018-06-15 13:08 Rev.: 17110


* reintegrates 'tree' into 'trunk'
- implements #735
* adds:
- log:branches/addtest@17040:17044
- log:branches/tree@16921:17109

2 lines of code changed in 1 file:

  • arb_CHANGES.txt (+2 -1)
westram 2018-05-04 18:06 Rev.: 16986


* reintegrates 'gcc' into 'trunk'
- ports arb to gcc 8.1 (fixing warnings)
* adds: log:branches/gcc@16965:16985

Update: continued by [17178]

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-04-30 18:27 Rev.: 16936


* reintegrates 'cleanup' into 'trunk'
- performs #762 (shrink 3.7 k)
* adds: log:branches/cleanup@16924:16935

0 lines of code changed in 1 file:

  • Makefile (-2)
westram 2018-04-20 13:04 Rev.: 16904


* reintegrates 'pvp' into 'trunk'
- fixes #782
- implements #701
* adds: log:branches/pvp@16882:16903

9 lines of code changed in 2 files:

  • Makefile (+3), arb_CHANGES.txt (+6 -3)
westram 2018-04-11 16:48 Rev.: 16880


* reintegrates 'multicore' into 'trunk'
- derive sequence classes able to be combined from new class {{{AP_combinableSeq}}}
* elim dummy functions from rest of hierarchy
- implements non-writing combine for add-species (speedup: 25-35%)
- introduce type {{{Mutations}}} => uses long everywhere (before mostly, but not always used float)
- allows use of {{{future}}}s
* nucleotide combine is able to calculate async (disabled via define atm -> {{{NEVER_COMBINE_ASYNC}}}; needs more work on calling algorithm)
* adds: log:branches/multicore@16769:16879

9 lines of code changed in 1 file:

  • Makefile (+9)

(926 more)

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