Directory [root]

Directory Created:
2000-11-23 10:41
Total Files:
17
Deleted Files:
22
Lines of Code:
7454

[root]
    directory in repo AISC (16 files, 3892 lines)
    directory in repo AISC_COM (1 files, 16 lines)
        directory in repo AISC (8 files, 2074 lines)
        directory in repo C (15 files, 2740 lines)
    directory in repo AISC_MKPTPS (4 files, 1872 lines)
    Folder removed from repo ALEIO (0 files, 0 lines)
    Folder removed from repo ALIV3 (0 files, 0 lines)
    directory in repo ARBDB (85 files, 44758 lines)
        Folder removed from repo EXAMPLES (0 files, 0 lines)
    Folder removed from repo ARBDB2 (0 files, 0 lines)
    Folder removed from repo ARBDBPP (0 files, 0 lines)
    Folder removed from repo ARBDBS (0 files, 0 lines)
    Folder removed from repo ARBDB_COMPRESS (0 files, 0 lines)
    directory in repo ARB_GDE (16 files, 4031 lines)
    Folder removed from repo AWDEMO (0 files, 0 lines)
    directory in repo AWT (32 files, 12319 lines)
    directory in repo AWTC (6 files, 1048 lines)
    directory in repo AWTI (10 files, 2871 lines)
    Folder removed from repo BERGEY (0 files, 0 lines)
    directory in repo BINDEP (36 files, 167 lines)
    directory in repo BINDINGS (2 files, 267 lines)
        directory in repo PERL (4 files, 1028 lines)
        directory in repo PYTHON (4 files, 147 lines)
    directory in repo BUGEX (1 files, 188 lines)
    Folder removed from repo CAT (0 files, 0 lines)
    Folder removed from repo CHIP (0 files, 0 lines)
    directory in repo CONSENSUS_TREE (13 files, 2235 lines)
    directory in repo CONVERTALN (36 files, 6584 lines)
    directory in repo CORE (46 files, 8555 lines)
    directory in repo DBSERVER (3 files, 561 lines)
    directory in repo DIST (20 files, 7371 lines)
    Folder removed from repo DUMMYINC (0 files, 0 lines)
    Folder removed from repo EDIT (0 files, 0 lines)
    directory in repo EDIT4 (52 files, 28713 lines)
    directory in repo EISPACK (7 files, 29479 lines)
    directory in repo GDE (2 files, 145 lines)
        directory in repo AxML (5 files, 5977 lines)
        directory in repo CLUSTAL (13 files, 4954 lines)
        directory in repo CLUSTALW (33 files, 21348 lines)
        Folder removed from repo CORE (0 files, 0 lines)
        directory in repo FASTDNAML (7 files, 6447 lines)
        directory in repo FASTTREE (3 files, 10124 lines)
        Folder removed from repo HGL_SRC (0 files, 0 lines)
        Folder removed from repo LOOPTOOL (0 files, 0 lines)
        directory in repo MAFFT (1 files, 55 lines)
            Folder removed from repo mafft-7.053-without-extensions (0 files, 0 lines)
                Folder removed from repo core (0 files, 0 lines)
                Folder removed from repo scripts (0 files, 0 lines)
            directory in repo mafft-7.055-with-extensions (4 files, 309 lines)
                directory in repo core (90 files, 75630 lines)
                directory in repo extensions (3 files, 72 lines)
                    directory in repo mxscarna_src (21 files, 6911 lines)
                        directory in repo probconsRNA (20 files, 7594 lines)
                        directory in repo vienna (6 files, 11842 lines)
        Folder removed from repo MOLPHY (0 files, 0 lines)
            Folder removed from repo doc (0 files, 0 lines)
            Folder removed from repo utl (0 files, 0 lines)
        directory in repo MUSCLE (1 files, 38 lines)
            directory in repo src (190 files, 34747 lines)
                directory in repo unused (3 files, 548 lines)
        directory in repo MrBAYES (1 files, 45 lines)
            directory in repo mrbayes_3.2.1 (31 files, 114639 lines)
        directory in repo PHYLIP (66 files, 71352 lines)
            directory in repo doc (42 files, 21478 lines)
        directory in repo PHYML (22 files, 15180 lines)
        directory in repo PHYML20130708 (2 files, 64 lines)
            directory in repo phyml (18 files, 22760 lines)
                Folder removed from repo bin (0 files, 0 lines)
                directory in repo doc (17 files, 24532 lines)
                directory in repo examples (5 files, 1255 lines)
                    directory in repo lg4x (5 files, 142 lines)
                directory in repo src (68 files, 78797 lines)
        directory in repo PROBCONS (1 files, 23 lines)
            directory in repo probcons (17 files, 6323 lines)
        directory in repo RAxML (31 files, 72525 lines)
        directory in repo RAxML8 (5 files, 698 lines)
        directory in repo SATIVA (5 files, 493 lines)
            directory in repo sativa (3 files, 1494 lines)
                directory in repo epac (8 files, 2380 lines)
                    directory in repo ete2 (1 files, 185 lines)
        directory in repo SUPPORT (10 files, 2584 lines)
        directory in repo TREEPUZZLE (6 files, 854 lines)
            Folder removed from repo data (0 files, 0 lines)
            directory in repo doc (3 files, 1653 lines)
            directory in repo src (18 files, 17676 lines)
    directory in repo GDEHELP (10 files, 774 lines)
        Folder removed from repo DATA_FILES (0 files, 0 lines)
        directory in repo FASTA (0 files, 0 lines)
            directory in repo GENBANK (1 files, 1500 lines)
            directory in repo MATRIX (9 files, 258 lines)
        directory in repo HELP_PLAIN (3 files, 135 lines)
        directory in repo HELP_WRITTEN (8 files, 750 lines)
        directory in repo MENUS (19 files, 2018 lines)
        Folder removed from repo PHYLIP (0 files, 0 lines)
    directory in repo GENOM (17 files, 5520 lines)
    directory in repo GENOM_IMPORT (18 files, 2818 lines)
    directory in repo GFX (2 files, 1079 lines)
    directory in repo GL (1 files, 61 lines)
        directory in repo glAW (10 files, 1498 lines)
        directory in repo glpng (4 files, 715 lines)
    directory in repo HEADERLIBS (7 files, 205 lines)
    directory in repo HELP_SOURCE (16 files, 3795 lines)
        directory in repo genhelp (6 files, 200 lines)
        directory in repo oldhelp (343 files, 25879 lines)
            directory in repo prompt (1 files, 31 lines)
            Folder removed from repo seer (0 files, 0 lines)
    directory in repo ISLAND_HOPPING (12 files, 2104 lines)
    Folder removed from repo JAVALIB (0 files, 0 lines)
    directory in repo MERGE (16 files, 5517 lines)
    directory in repo MULTI_PROBE (21 files, 6003 lines)
    directory in repo NALIGNER (26 files, 7913 lines)
    directory in repo NAMES (4 files, 1535 lines)
    directory in repo NAMES_COM (8 files, 297 lines)
    Folder removed from repo NIELS_F77 (0 files, 0 lines)
    directory in repo NTREE (43 files, 18070 lines)
    Folder removed from repo ORS_CGI (0 files, 0 lines)
    Folder removed from repo ORS_COM (0 files, 0 lines)
    Folder removed from repo ORS_SERVER (0 files, 0 lines)
    directory in repo PARSIMONY (19 files, 8885 lines)
    directory in repo PERL2ARB (10 files, 1224 lines)
    directory in repo PERLTOOLS (3 files, 1092 lines)
    directory in repo PERL_SCRIPTS (0 files, 0 lines)
        directory in repo ACI (1 files, 30 lines)
        directory in repo ARBTOOLS (2 files, 625 lines)
            Folder removed from repo DOCUMENTED (0 files, 0 lines)
            directory in repo IFTHELP (4 files, 254 lines)
            directory in repo TESTS (1 files, 3 lines)
        directory in repo BIOPERL (2 files, 119 lines)
        directory in repo GENERAL (1 files, 99 lines)
        directory in repo GENOME (3 files, 452 lines)
        Folder removed from repo IFTHELP (0 files, 0 lines)
        directory in repo MACROS (1 files, 158 lines)
        Folder removed from repo MAUS (0 files, 0 lines)
        directory in repo SAI (2 files, 159 lines)
        directory in repo SPECIES (3 files, 329 lines)
        directory in repo lib (1 files, 80 lines)
        directory in repo test (5 files, 212 lines)
    Folder removed from repo PGT (0 files, 0 lines)
        Folder removed from repo xslt (0 files, 0 lines)
    directory in repo PHYLO (11 files, 2150 lines)
    directory in repo PRIMER_DESIGN (20 files, 3030 lines)
    directory in repo PROBE (25 files, 10726 lines)
    directory in repo PROBE_COM (8 files, 446 lines)
    directory in repo PROBE_DESIGN (11 files, 6533 lines)
    Folder removed from repo PROBE_SERVER (0 files, 0 lines)
        Folder removed from repo PROBE_GROUP (0 files, 0 lines)
        Folder removed from repo PROBE_GROUP_DESIGN (0 files, 0 lines)
        Folder removed from repo TREE_MERGE (0 files, 0 lines)
        Folder removed from repo WORKER (0 files, 0 lines)
    directory in repo PROBE_SET (32 files, 6863 lines)
    Folder removed from repo PROBE_WEB (0 files, 0 lines)
        Folder removed from repo CLIENT (0 files, 0 lines)
        Folder removed from repo SERVER (0 files, 0 lines)
    directory in repo READSEQ (9 files, 5275 lines)
    directory in repo RNA3D (20 files, 4636 lines)
        Folder removed from repo Attic (0 files, 0 lines)
            Folder removed from repo OPENGL (0 files, 0 lines)
            Folder removed from repo data (0 files, 0 lines)
            Folder removed from repo images (0 files, 0 lines)
    directory in repo RNACMA (10 files, 1466 lines)
    directory in repo SECEDIT (28 files, 8537 lines)
    Folder removed from repo SEER (0 files, 0 lines)
    directory in repo SEQ_QUALITY (12 files, 2457 lines)
    directory in repo SERVERCNTRL (4 files, 559 lines)
    directory in repo SH (33 files, 2357 lines)
    directory in repo SL (2 files, 95 lines)
        directory in repo ALILINK (6 files, 2328 lines)
        directory in repo ALIVIEW (4 files, 177 lines)
        directory in repo AP_TREE (8 files, 2369 lines)
        directory in repo ARB_TREE (4 files, 559 lines)
        directory in repo AW_HELIX (4 files, 361 lines)
        directory in repo AW_NAME (5 files, 1058 lines)
        directory in repo CB (7 files, 1126 lines)
        directory in repo CONSENSUS (3 files, 1730 lines)
        directory in repo DB_QUERY (5 files, 2997 lines)
        directory in repo DB_SCANNER (4 files, 736 lines)
        directory in repo DB_UI (5 files, 2067 lines)
        directory in repo FAST_ALIGNER (8 files, 5873 lines)
        Folder removed from repo FILE_BUFFER (0 files, 0 lines)
        directory in repo FILTER (6 files, 901 lines)
        directory in repo FILTSEQEXP (3 files, 649 lines)
        directory in repo GROUP_SEARCH (3 files, 4170 lines)
        directory in repo GUI_ALIVIEW (9 files, 1342 lines)
        directory in repo HELIX (6 files, 807 lines)
        directory in repo INSDEL (2 files, 2362 lines)
        directory in repo ITEMS (9 files, 1572 lines)
        directory in repo ITEM_SHADER (5 files, 2380 lines)
        directory in repo LOCATION (4 files, 611 lines)
        directory in repo MACROS (10 files, 1867 lines)
        directory in repo MATRIX (4 files, 336 lines)
        directory in repo NDS (3 files, 1083 lines)
        directory in repo NEIGHBOURJOIN (5 files, 557 lines)
        directory in repo PRONUC (8 files, 2771 lines)
        directory in repo PTCLEAN (4 files, 264 lines)
        directory in repo PVP (2 files, 484 lines)
        directory in repo QUERY (3 files, 666 lines)
        directory in repo REFENTRIES (4 files, 527 lines)
        directory in repo REGEXPR (4 files, 370 lines)
        Folder removed from repo ROOTED_TREE (0 files, 0 lines)
        directory in repo SEQIO (5 files, 1125 lines)
        directory in repo SEQUENCE (10 files, 1757 lines)
        directory in repo TRANSLATE (4 files, 346 lines)
        directory in repo TREEDISP (10 files, 7351 lines)
        directory in repo TREE_ADMIN (4 files, 345 lines)
        directory in repo TREE_READ (5 files, 1235 lines)
        directory in repo TREE_WRITE (4 files, 576 lines)
    directory in repo SOURCE_TOOLS (62 files, 10036 lines)
        directory in repo COMPILE_COMPAT (4 files, 129 lines)
        directory in repo docs (1 files, 79 lines)
        directory in repo release (2 files, 384 lines)
    directory in repo STAT (9 files, 2160 lines)
    directory in repo TEMPLATES (43 files, 7957 lines)
    Folder removed from repo TEST (0 files, 0 lines)
    Folder removed from repo TESTAWT (0 files, 0 lines)
    Folder removed from repo TESTVECTORFONT (0 files, 0 lines)
    directory in repo TOOLS (27 files, 11964 lines)
    directory in repo TREEGEN (17 files, 1459 lines)
    Folder removed from repo TREE_COMPRESS (0 files, 0 lines)
    Folder removed from repo TRS (0 files, 0 lines)
    directory in repo UNIT_TESTER (22 files, 5722 lines)
        directory in repo flags (1 files, 2 lines)
        directory in repo run (34 files, 13969 lines)
            directory in repo consense (0 files, 0 lines)
                directory in repo 1 (7 files, 475 lines)
                directory in repo 2 (5 files, 894 lines)
                directory in repo 3 (4 files, 1543 lines)
                directory in repo 4 (3 files, 146 lines)
                directory in repo 6 (1 files, 49 lines)
            directory in repo diff (4 files, 72 lines)
            directory in repo display (25 files, 17274 lines)
            directory in repo distance (3 files, 69 lines)
            Folder removed from repo fakehome (0 files, 0 lines)
            directory in repo general (6 files, 90 lines)
            directory in repo help (3 files, 933 lines)
            directory in repo homefake (0 files, 0 lines)
                directory in repo .arb_prop (1 files, 1 lines)
            directory in repo impexp (38 files, 4437 lines)
            directory in repo pars (22 files, 828 lines)
            directory in repo tools (22 files, 475 lines)
            directory in repo trees (1 files, 27 lines)
            directory in repo xsub (4 files, 511 lines)
        Folder removed from repo sockets (0 files, 0 lines)
        directory in repo valgrind (2 files, 179 lines)
    directory in repo WETC (3 files, 114 lines)
    directory in repo WINDOW (75 files, 26013 lines)
    directory in repo XML (4 files, 500 lines)
    directory in repo XML_IMPORT (2 files, 46 lines)
        directory in repo IMP_TREE (9 files, 592 lines)
    directory in repo bin (2 files, 211 lines)
    directory in repo doc (1 files, 85 lines)
    directory in repo etc (6 files, 5366 lines)
    Folder removed from repo fig2dev (0 files, 0 lines)
        Folder removed from repo dev (0 files, 0 lines)
    directory in repo lib (8 files, 12081 lines)
        directory in repo BUGS (2 files, 69 lines)
        directory in repo addlibs (1 files, 14 lines)
        directory in repo arb_default (7 files, 694 lines)
        directory in repo desktop (4 files, 21 lines)
        directory in repo dtd (2 files, 92 lines)
        directory in repo export (14 files, 130 lines)
        directory in repo gde (2 files, 25 lines)
        Folder removed from repo icons (0 files, 0 lines)
        directory in repo import (9 files, 680 lines)
            directory in repo nonformats (7 files, 783 lines)
        directory in repo inputMasks (9 files, 343 lines)
        directory in repo macros (4 files, 126 lines)
            directory in repo .checks (3 files, 675 lines)
            directory in repo ARB (0 files, 0 lines)
                directory in repo SEQ_DATA (1 files, 111 lines)
        directory in repo motifHack (3 files, 322 lines)
            Folder removed from repo pixmaps (0 files, 0 lines)
        directory in repo nas (3 files, 17 lines)
        directory in repo pictures (94 files, 5171 lines)
            Folder removed from repo PARS (0 files, 0 lines)
            directory in repo awt (19 files, 589 lines)
            directory in repo awtc (2 files, 37 lines)
            directory in repo consensus (2 files, 880 lines)
            directory in repo cpro (2 files, 76 lines)
            Folder removed from repo demo (0 files, 0 lines)
            directory in repo edit4 (16 files, 1377 lines)
            Folder removed from repo etc (0 files, 0 lines)
            directory in repo faligner (3 files, 149 lines)
            Folder removed from repo findcorr (0 files, 0 lines)
            directory in repo merge (12 files, 488 lines)
            directory in repo pars (3 files, 177 lines)
            directory in repo phylo (3 files, 60 lines)
            directory in repo query (5 files, 133 lines)
            Folder removed from repo seer (0 files, 0 lines)
            Folder removed from repo unused (0 files, 0 lines)
                Folder removed from repo demo (0 files, 0 lines)
                Folder removed from repo findcorr (0 files, 0 lines)
            directory in repo window (1 files, 30 lines)
        directory in repo pixmaps (84 files, 3509 lines)
            directory in repo edit (20 files, 602 lines)
                Folder removed from repo unused (0 files, 0 lines)
            directory in repo icons (7 files, 273 lines)
                Folder removed from repo unused (0 files, 0 lines)
            directory in repo merge (1 files, 48 lines)
            Folder removed from repo pgt (0 files, 0 lines)
            directory in repo print (6 files, 239 lines)
                Folder removed from repo unused (0 files, 0 lines)
            Folder removed from repo seer (0 files, 0 lines)
            Folder removed from repo unused (0 files, 0 lines)
        Folder removed from repo protein_2nd_structure (0 files, 0 lines)
        directory in repo rna3d (5 files, 4617 lines)
            directory in repo images (22 files, 0 lines)
        directory in repo sellists (9 files, 98 lines)
        directory in repo submit (3 files, 1061 lines)
    directory in repo ptpan (4 files, 57 lines)
    directory in repo util (18 files, 1534 lines)

Lines of Code

Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 1080 (100.0%) 15261 (100.0%) 14.1
westram 973 (90.1%) 13967 (91.5%) 14.3
oldcode 9 (0.8%) 760 (5.0%) 84.4
epruesse 33 (3.1%) 281 (1.8%) 8.5
boehnel 4 (0.4%) 75 (0.5%) 18.7
yadhu 17 (1.6%) 74 (0.5%) 4.3
meierh 12 (1.1%) 24 (0.2%) 2.0
richter 4 (0.4%) 19 (0.1%) 4.7
baderk 17 (1.6%) 18 (0.1%) 1.0
spanfeln 1 (0.1%) 11 (0.1%) 11.0
foerster 2 (0.2%) 11 (0.1%) 5.5
arb_build 1 (0.1%) 8 (0.1%) 8.0
aboeckma 2 (0.2%) 5 (0.0%) 2.5
jobb 1 (0.1%) 4 (0.0%) 4.0
artemov 2 (0.2%) 2 (0.0%) 1.0
littschw 1 (0.1%) 1 (0.0%) 1.0
lai 1 (0.1%) 1 (0.0%) 1.0

Most Recent Commits

westram 2019-03-18 18:07 Rev.: 17666


ignore leftover emacs autosave files.

1 lines of code changed in 1 file:

  • .gitignore (+1)
westram 2019-03-18 18:06 Rev.: 17665


allow to build single unit and run its tests.

use
{{{
cd $ARBHOME;setenv UNIT PROBE/PROBE; makeloc oneunit
}}}
for tcsh or
{{{
cd $ARBHOME; export UNIT=PROBE/PROBE; makeloc oneunit
}}}
for bash.

22 lines of code changed in 1 file:

  • Makefile (+22 -5)
westram 2019-03-13 10:14 Rev.: 17656


* change names of ignored patch-files

3 lines of code changed in 1 file:

  • .gitignore (+3 -6)
westram 2019-03-07 17:30 Rev.: 17651


* reintegrates 'cleanup' into 'trunk'
* adds: log:branches/cleanup@17627:17650

1 lines of code changed in 1 file:

  • .gitignore (+1)
westram 2019-03-06 12:10 Rev.: 17645


update doxygen docs:

- updated obsolete setting using "doxygen -u".
- use Helvetica font for dot-gfx generated by doxygen.
- activates conf-mode in emacs.

1701 lines of code changed in 1 file:

  • Doxyfile (+1701 -776)
westram 2019-03-04 19:39 Rev.: 17641


* reintegrates 'mix' into 'trunk'
- improve git/svn interoperability
* adds: log:branches/mix@17637:17640

3 lines of code changed in 1 file:

  • .gitignore (+3)
westram 2019-03-04 14:22 Rev.: 17634


* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

35 lines of code changed in 1 file:

  • .gitignore (new 35)
westram 2019-02-26 09:12 Rev.: 17626


- accept gcc 8.3

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
epruesse 2019-02-17 06:06 Rev.: 17625

Honor $AR env variable if set (make defaults to 'ar')

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
epruesse 2019-02-17 06:05 Rev.: 17624

Add xerces-c-dev to ubuntu build deps

1 lines of code changed in 1 file:

  • arb_UBUNTU.txt (+1)
westram 2018-12-23 11:48 Rev.: 17620


* added gcc 7.4

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-11-25 19:19 Rev.: 17618


* full update from child 'fix' into 'trunk'
- fixes undefined variables in makefiles
- fixes perl tests
* adds: log:branches/fix@17599:17617

82 lines of code changed in 1 file:

  • Makefile (+82 -43)
westram 2018-11-08 17:56 Rev.: 17602


* updated README

41 lines of code changed in 1 file:

  • arb_README.txt (+41 -37)
westram 2018-10-31 09:52 Rev.: 17593


* reintegrates 'fix' into 'trunk'
- performs #798
* adds genetic code tables (24-31)
* adds combined amino acid J (I or L)
* improved translate and/or realign
- handle optional start-/stop-codons
- improve recognition of nuc-triples containing IUPAC-codes
* error messages now always list EMBL table numbers
* adds:
- log:branches/fix@17480:17485,17491:17492,17494:17507,17509:17528,17534:17592
- log:branches/optional@17481:17568

4 lines of code changed in 2 files:

  • Makefile (+1 -1), arb_CHANGES.txt (+3 -1)
westram 2018-10-26 18:19 Rev.: 17542


* allow compilation with gcc 6.5.0

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-10-17 13:21 Rev.: 17481


- updated

2 lines of code changed in 1 file:

  • arb_CHANGES.txt (+2 -1)
westram 2018-10-02 09:08 Rev.: 17424


* fix compilation w/o config.makefile (=auto-generation from template)
- was broken by [17375]

8 lines of code changed in 1 file:

  • Makefile (+8 -6)
westram 2018-09-18 09:53 Rev.: 17375


* make sure that either {{{DARWIN=1}}} or {{{LINUX=1}}} in config.makefile

6 lines of code changed in 1 file:

  • Makefile (+6)
westram 2018-09-13 09:24 Rev.: 17367


* allow parallel calls to 'make tags'
- uses build-unique temporary files to avoid conflicts

11 lines of code changed in 1 file:

  • Makefile (+11 -10)
westram 2018-09-13 09:19 Rev.: 17366


* provide a build specific ID (ARBBID)
- different in each call to make
- constant in recursive calls (and submakefiles)

9 lines of code changed in 1 file:

  • Makefile (+9)
westram 2018-09-13 08:43 Rev.: 17365


* svn-ignore temporary files used by target 'tags' (solves problems with some of my scripts)

2 lines of code changed in 1 file:

  • Makefile (+2 -2)
westram 2018-09-02 17:44 Rev.: 17345


* updated

3 lines of code changed in 1 file:

  • arb_CHANGES.txt (+3)
westram 2018-08-30 16:24 Rev.: 17342


* reintegrates 'group' into 'trunk'
- implements #780
* adds: log:branches/group@17162:17190,17261:17341

27 lines of code changed in 1 file:

  • Makefile (+27 -19)
westram 2018-07-27 07:44 Rev.: 17277


* activate {{{-Wmultistatement-macros}}} for gcc 8++

16 lines of code changed in 1 file:

  • Makefile (+16 -13)
westram 2018-07-26 14:57 Rev.: 17272


* tested and accepted gcc 8.2

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-06-25 09:57 Rev.: 17114


* only refer to {{{/etc/bash.bashrc}}} (for global alias)
* add howto-edit-global-bashrc for unintended sysadmins :)

7 lines of code changed in 1 file:

  • arb_install.sh (+7 -3)
westram 2018-06-15 12:08 Rev.: 17110


* reintegrates 'tree' into 'trunk'
- implements #735
* adds:
- log:branches/addtest@17040:17044
- log:branches/tree@16921:17109

2 lines of code changed in 1 file:

  • arb_CHANGES.txt (+2 -1)
westram 2018-05-04 17:06 Rev.: 16986


* reintegrates 'gcc' into 'trunk'
- ports arb to gcc 8.1 (fixing warnings)
* adds: log:branches/gcc@16965:16985

Update: continued by [17178]

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2018-04-30 17:27 Rev.: 16936


* reintegrates 'cleanup' into 'trunk'
- performs #762 (shrink 3.7 k)
* adds: log:branches/cleanup@16924:16935

0 lines of code changed in 1 file:

  • Makefile (-2)
westram 2018-04-20 12:04 Rev.: 16904


* reintegrates 'pvp' into 'trunk'
- fixes #782
- implements #701
* adds: log:branches/pvp@16882:16903

9 lines of code changed in 2 files:

  • Makefile (+3), arb_CHANGES.txt (+6 -3)
westram 2018-04-11 15:48 Rev.: 16880


* reintegrates 'multicore' into 'trunk'
- derive sequence classes able to be combined from new class {{{AP_combinableSeq}}}
* elim dummy functions from rest of hierarchy
- implements non-writing combine for add-species (speedup: 25-35%)
- introduce type {{{Mutations}}} => uses long everywhere (before mostly, but not always used float)
- allows use of {{{future}}}s
* nucleotide combine is able to calculate async (disabled via define atm -> {{{NEVER_COMBINE_ASYNC}}}; needs more work on calling algorithm)
* adds: log:branches/multicore@16769:16879

9 lines of code changed in 1 file:

  • Makefile (+9)
westram 2018-04-05 11:09 Rev.: 16873


* fix typos ("neither")

1 lines of code changed in 1 file:

  • arb_install.sh (+1 -1)
westram 2018-01-25 18:46 Rev.: 16827


* add gcc 7.3.0 (compiled out-of-the-box)

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2017-11-28 17:09 Rev.: 16763


* partial merge from 'gcc' into 'trunk'
- use {{{nullptr}}} in Cxx11 (with backward compatibility)
* adds: log:branches/gcc@16683:16740,16744:16746,16751

1 lines of code changed in 1 file:

  • Makefile (+1 -1)
westram 2017-11-19 15:19 Rev.: 16683


* full update from child 'gcc' into 'trunk'
- more warning fixes
- fix bug in prettyprint
* adds: log:branches/gcc@16668:16682

37 lines of code changed in 1 file:

  • Makefile (+37 -18)
westram 2017-11-17 12:54 Rev.: 16668


* full update from child 'gcc' into 'trunk'
- fix/suppress (new) compiler warnings
- skip vectorizer notes
* adds: log:branches/gcc@16656:16667

0 lines of code changed in 1 file:

  • Makefile (-4)
westram 2017-11-14 14:36 Rev.: 16653


* reintegrates 'gcc' into 'trunk' (fixes defect part of #752)
- allow compilation with gcc 7.x series (accepting 2 clang-test-results for gcc 7.x)
- vectorization:
* in {{{SL/CONSENSUS/chartable.cxx}}} works again with gcc 7.x (broken for 6.x series)
- checker: added syntax to exclude a range of versions
* check new 7.x vectorizations + fix vectorization-counts
* adds: log:branches/gcc@16578:16635,16649:16652

4 lines of code changed in 1 file:

  • Makefile (+4 -3)
westram 2017-11-12 14:53 Rev.: 16649


* partial merge from 'gcc' into 'trunk'
- handles #770 by reducing optimizations of several bleeding test functions
* adds: log:branches/gcc@16636:16648

3 lines of code changed in 1 file:

  • arbsrc_README_gcc.txt (+3 -10)
westram 2017-11-06 13:54 Rev.: 16628


* reintegrates 'vectorize' into 'trunk'
- fixes #700
* documented vectorization-checks
* fine-grained check based on gcc-version
- drops old gcc-versions (<4.4.3)
- new attribute {{{__ATTR__DONT_VECTORIZE}}}
* disabled vectorization of {{{POS_TREE2::init_static()}}} for newer gcc-versions (generated code fails tests)
- added a bunch of new vectorization-checks (probably irrelevant to overall performance)
* adds: log:branches/vectorize@15531:16585,16595:16627

11 lines of code changed in 1 file:

  • Makefile (+11 -23)
westram 2017-10-29 17:41 Rev.: 16582


* refuse to compile with gcc 4.6.4
- fails to compile inplace ctors (working with {{{gcc 4.4.3, 4.6.x && x!=4, 4.7++}}})
- compiler detection fails (gcc segfaults when attempting to dump predefined variables). suppress error @ caller.
* link to GccVersionInfo

10 lines of code changed in 1 file:

  • Makefile (+10 -3)

(917 more)

Generated by StatSVN 0.7.0