Directory GDE/FASTTREE/

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westram 2023-08-05 13:17 Rev.: 19453

* use {{{-W -Wall}}} in FASTTREE + fix warnings.

15 lines of code changed in 2 files:

• GDE/FASTTREE: FastTree.c (+13 -8), Makefile (+2 -2)

westram 2023-08-05 12:40 Rev.: 19446

* introduce {{{onlyC_flags}}}
- flags used for C compilation only.
- similar to {{{cxxflags}}} (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to {{{-Werror-implicit-function-declaration}}}
* error is only effective in a small part of these modules.
* TODO: need to activate warnings -> will activate the error as well.

1 lines of code changed in 1 file:

• GDE/FASTTREE: Makefile (+1 -1)

westram 2021-11-14 12:18 Rev.: 18842

* allow conditional build of OPENMP version of {{{FastTree}}}
- tweak preprocessor: allow to {{{#define}}} via CLI.
- globally define whether OPENMP shall be used
* export to submakefiles.
* disable under OSX
- capability to build OPENMP binary depends on compiler
- LLVM/Clang 3.7 required
- forward {{{USE_OPENMP}}} into preprocessor.
- in fasttree.menu: when not defined {{{USE_OPENMP}}} -> skip MP option from GUI + hardcode binary.
- conditionally build OPENMP binary depending on {{{USE_OPENMP}}}.

8 lines of code changed in 1 file:

• GDE/FASTTREE: Makefile (+8 -1)

westram 2021-11-10 14:46 Rev.: 18840

* also build OPENMP version of {{{FastTree}}}
- add selector for single/multi processor version to GUI.
- store used version in tree comment.
- svn/git-ignore MP binary

9 lines of code changed in 1 file:

• GDE/FASTTREE: Makefile (+9 -4)

westram 2021-11-10 14:36 Rev.: 18839

* upgrade {{{FastTree}}} to version 2.1.11
- cleanup: define flags and use make variables.
- specify fasttree version in help.
- update changelog.

272 lines of code changed in 2 files:

• GDE/FASTTREE: FastTree.c (+264 -54), Makefile (+8 -4)

westram 2021-11-04 15:02 Rev.: 18822

* do not generate a local binary.
* instead directly build installed binary in $ARBHOME/bin.

5 lines of code changed in 1 file:

• GDE/FASTTREE: Makefile (+5 -7)

westram 2019-03-04 14:22 Rev.: 17634

* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

1 lines of code changed in 1 file:

• GDE/FASTTREE: .gitignore (new 1)

westram 2014-05-26 14:30 Rev.: 12299

* CC/CXX used by arb
- overwrite defaults after copying them into A_CC/A_CXX
- fix all errors (triggered by above change)
* remove fallbacks (probcons; MUSCLE; FASTTREE)
* set CC/CXX from A_CC/A_CXX (MrBAYES; PHYML20130708)

1 lines of code changed in 1 file:

• GDE/FASTTREE: Makefile (+1 -1)

westram 2014-02-15 15:51 Rev.: 11626

* reintegrates 'fix' into 'trunk'
- implements: #158
- fixes: #386, #463, #459
* adds:
- log:branches/fix@11579:11625

11 lines of code changed in 1 file:

• GDE/FASTTREE: Makefile (+11 -6)

westram 2014-01-10 14:01 Rev.: 11461

* get rid of boring warnings in PROBCONS, MrBAYES and FASTTREE

4 lines of code changed in 1 file:

• GDE/FASTTREE: Makefile (+4 -1)

westram 2013-09-04 09:58 Rev.: 10530

* UTF8 -> ASCII

1 lines of code changed in 1 file:

• GDE/FASTTREE: Makefile (+1 -2)

aboeckma 2013-08-13 10:35 Rev.: 10433

Added fasttree2 source (no menu, yet)

10116 lines of code changed in 2 files:

• GDE/FASTTREE: FastTree.c (new 10094), Makefile (new 22)