Directory GDE/FASTTREE/

Directory Created:
2013-08-13 11:35
Total Files:
3
Deleted Files:
0
Lines of Code:
10348

[root]/GDE/FASTTREE

Lines of Code

GDE/FASTTREE/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 12 (100.0%) 10428 (100.0%) 869.0
aboeckma 2 (16.7%) 10116 (97.0%) 5058.0
westram 10 (83.3%) 312 (3.0%) 31.2

Most Recent Commits

westram 2021-11-14 13:18 Rev.: 18842


* allow conditional build of OPENMP version of {{{FastTree}}}
- tweak preprocessor: allow to {{{#define}}} via CLI.
- globally define whether OPENMP shall be used
* export to submakefiles.
* disable under OSX
- capability to build OPENMP binary depends on compiler
- LLVM/Clang 3.7 required
- forward {{{USE_OPENMP}}} into preprocessor.
- in fasttree.menu: when not defined {{{USE_OPENMP}}} -> skip MP option from GUI + hardcode binary.
- conditionally build OPENMP binary depending on {{{USE_OPENMP}}}.

8 lines of code changed in 1 file:

  • GDE/FASTTREE: Makefile (+8 -1)
westram 2021-11-10 15:46 Rev.: 18840


* also build OPENMP version of {{{FastTree}}}
- add selector for single/multi processor version to GUI.
- store used version in tree comment.
- svn/git-ignore MP binary

9 lines of code changed in 1 file:

  • GDE/FASTTREE: Makefile (+9 -4)
westram 2021-11-10 15:36 Rev.: 18839


* upgrade {{{FastTree}}} to version 2.1.11
- cleanup: define flags and use make variables.
- specify fasttree version in help.
- update changelog.

272 lines of code changed in 2 files:

  • GDE/FASTTREE: FastTree.c (+264 -54), Makefile (+8 -4)
westram 2021-11-04 16:02 Rev.: 18822


* do not generate a local binary.
* instead directly build installed binary in $ARBHOME/bin.

5 lines of code changed in 1 file:

  • GDE/FASTTREE: Makefile (+5 -7)
westram 2019-03-04 15:22 Rev.: 17634


* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

1 lines of code changed in 1 file:

  • GDE/FASTTREE: .gitignore (new 1)
westram 2014-05-26 15:30 Rev.: 12299


* CC/CXX used by arb
- overwrite defaults after copying them into A_CC/A_CXX
- fix all errors (triggered by above change)
* remove fallbacks (probcons; MUSCLE; FASTTREE)
* set CC/CXX from A_CC/A_CXX (MrBAYES; PHYML20130708)

1 lines of code changed in 1 file:

  • GDE/FASTTREE: Makefile (+1 -1)
westram 2014-02-15 16:51 Rev.: 11626


* reintegrates 'fix' into 'trunk'
- implements: #158
- fixes: #386, #463, #459
* adds:
- log:branches/fix@11579:11625

11 lines of code changed in 1 file:

  • GDE/FASTTREE: Makefile (+11 -6)
westram 2014-01-10 15:01 Rev.: 11461


* get rid of boring warnings in PROBCONS, MrBAYES and FASTTREE

4 lines of code changed in 1 file:

  • GDE/FASTTREE: Makefile (+4 -1)
westram 2013-09-04 10:58 Rev.: 10530


* UTF8 -> ASCII

1 lines of code changed in 1 file:

  • GDE/FASTTREE: Makefile (+1 -2)
aboeckma 2013-08-13 11:35 Rev.: 10433

Added fasttree2 source (no menu, yet)

10116 lines of code changed in 2 files:

  • GDE/FASTTREE: FastTree.c (new 10094), Makefile (new 22)
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