Directory GDE/MrBAYES/

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westram 2023-08-05 12:40 Rev.: 19446

* introduce {{{onlyC_flags}}}
- flags used for C compilation only.
- similar to {{{cxxflags}}} (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to {{{-Werror-implicit-function-declaration}}}
* error is only effective in a small part of these modules.
* TODO: need to activate warnings -> will activate the error as well.

1 lines of code changed in 1 file:

• GDE/MrBAYES: Makefile (+1 -1)

westram 2014-05-26 14:30 Rev.: 12299

* CC/CXX used by arb
- overwrite defaults after copying them into A_CC/A_CXX
- fix all errors (triggered by above change)
* remove fallbacks (probcons; MUSCLE; FASTTREE)
* set CC/CXX from A_CC/A_CXX (MrBAYES; PHYML20130708)

4 lines of code changed in 1 file:

• GDE/MrBAYES: Makefile (+4 -1)

westram 2014-03-19 13:00 Rev.: 11821

* prepare !MrBayes-32bit compilation
- pass down ARB_64 into submakefiles
- generate dependencies in !MrBayes Makefile (fixes missing dependency from config.h)
- pass ARB_64 and DARWIN to gcc and use them to define flags in config.h:
* ARB_64 -> SSE_ENABLED + _64BIT
* ARB_DARWIN -> MAC_VERSION (UNIX_VERSION otherwise)
* let 32bit-compile fail for now

19 lines of code changed in 1 file:

• GDE/MrBAYES: Makefile (+19 -3)

westram 2014-02-15 15:51 Rev.: 11626

* reintegrates 'fix' into 'trunk'
- implements: #158
- fixes: #386, #463, #459
* adds:
- log:branches/fix@11579:11625

12 lines of code changed in 1 file:

• GDE/MrBAYES: Makefile (+12 -9)

westram 2013-09-04 09:58 Rev.: 10530

* UTF8 -> ASCII

1 lines of code changed in 1 file:

• GDE/MrBAYES: Makefile (+1 -1)

westram 2013-08-23 12:30 Rev.: 10479

* async GDE build
- pass down make flags (esp. -j) into subdirectories
- enclose subbuilds in $(SEP) as in main ARB Makefile (showing enter/exit timestamp for each subdir)
- mafft: build/clean core+extensions async
- mrbayes:
* define proper rules to make target 'mb' work with -j (no idea why that is needed)
* do not clear MAKEFLAGS in caller Makefile
- speedup for 'build' (on 8 cores)
* after GDE clean: 60s -> 30s
* after MrBAYES clean: 44s -> 17s

1 lines of code changed in 1 file:

• GDE/MrBAYES: Makefile (+1 -2)

epruesse 2013-08-07 14:44 Rev.: 10417

re-enable make buildins for !MrBayes (unset MAKEFLAGS)

1 lines of code changed in 1 file:

• GDE/MrBAYES: Makefile (+1 -3)

aboeckma 2013-08-07 13:47 Rev.: 10416

Added mr bayes (no menu yet)

26 lines of code changed in 1 file:

• GDE/MrBAYES: Makefile (new 26)