Directory GDE/PHYML20130708/

Directory Created:
2013-07-19 15:02
Total Files:
2
Deleted Files:
0
Lines of Code:
64

[root]/GDE/PHYML20130708
            directory in repo phyml (18 files, 22761 lines)
                Folder removed from repo bin (0 files, 0 lines)
                directory in repo doc (17 files, 24532 lines)
                directory in repo examples (5 files, 1255 lines)
                    directory in repo lg4x (5 files, 142 lines)
                directory in repo src (68 files, 78797 lines)

Lines of Code

GDE/PHYML20130708/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 14 (100.0%) 115 (100.0%) 8.2
westram 11 (78.6%) 74 (64.3%) 6.7
aboeckma 2 (14.3%) 38 (33.0%) 19.0
epruesse 1 (7.1%) 3 (2.6%) 3.0

Most Recent Commits

westram 2019-03-04 15:22 Rev.: 17634


* reintegrates 'mix' into 'trunk'
* prepare arb for hybrid svn/git use (central svn + local git)
* adds: log:branches/mix@17631:17633

1 lines of code changed in 1 file:

  • GDE/PHYML20130708: .gitignore (new 1)
westram 2018-11-25 20:19 Rev.: 17618


* full update from child 'fix' into 'trunk'
- fixes undefined variables in makefiles
- fixes perl tests
* adds: log:branches/fix@17599:17617

9 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+9 -3)
westram 2014-08-04 14:50 Rev.: 12662


* fixes build of GDE/PHYML20130708 (broken by [12660])

7 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+7 -5)
epruesse 2014-08-03 15:14 Rev.: 12660

add some files to make clean

3 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+3)
westram 2014-05-26 15:30 Rev.: 12299


* CC/CXX used by arb
- overwrite defaults after copying them into A_CC/A_CXX
- fix all errors (triggered by above change)
* remove fallbacks (probcons; MUSCLE; FASTTREE)
* set CC/CXX from A_CC/A_CXX (MrBAYES; PHYML20130708)

3 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+3)
westram 2014-02-28 17:20 Rev.: 11698


* full update from child 'rc' into 'trunk'
* adds:
- log:branches/rc@11679:11696

9 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+9 -1)
westram 2013-10-02 14:00 Rev.: 10690


- for some unknown reason calling PHYML-'make install' fails to install the binary under some condition and then even repeated arb-builds do not succeed
- AFAIK this does not happen in clean checkouts (so jenkins did never complain)
- when that happens, do a complete rebuild of PHYML

9 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+9)
westram 2013-09-04 10:58 Rev.: 10530


* UTF8 -> ASCII

1 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+1 -1)
westram 2013-08-28 16:16 Rev.: 10508


* PHYML20130708 Makefile
- did not always make final target ($(ARBHOME)/bin/phyml...)
- define complete dependency chain => no matter what is deleted from WC, it should be rebuild now
- no longer trigger configure-call by stamp (let it depend on Makefile, i.e. as long as Makefile is not changed, configure will be called exactly once)
- do auto-clean before configure
- directly call 'make install' (does build as well)

21 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+21 -17)
westram 2013-08-23 13:30 Rev.: 10479


* async GDE build
- pass down make flags (esp. -j) into subdirectories
- enclose subbuilds in $(SEP) as in main ARB Makefile (showing enter/exit timestamp for each subdir)
- mafft: build/clean core+extensions async
- mrbayes:
* define proper rules to make target 'mb' work with -j (no idea why that is needed)
* do not clear MAKEFLAGS in caller Makefile
- speedup for 'build' (on 8 cores)
* after GDE clean: 60s -> 30s
* after MrBAYES clean: 44s -> 17s

3 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+3 -7)
westram 2013-08-22 13:11 Rev.: 10476


* reverted [10467] and [10466] (build failed for 'cent5')

8 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+8 -3)
westram 2013-08-21 14:50 Rev.: 10466


* ~~'configure' is modified by compiling on a machine with different autoconf version~~
- ~~removed 'configure' from SVN; delete it on 'clean'~~
- ~~call autoconf before configure~~

(reverted by [10467])

3 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+3 -8)
aboeckma 2013-07-19 15:23 Rev.: 10308

Do not configure phyml on every build

17 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (+17 -6)
aboeckma 2013-07-19 15:02 Rev.: 10307

added most recent version of phyml

21 lines of code changed in 1 file:

  • GDE/PHYML20130708: Makefile (new 21)
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