Directory EDIT4/

Directory Created:
2000-11-23 11:41
Total Files:
51
Deleted Files:
14
Lines of Code:
28774

[root]/EDIT4

Lines of Code

EDIT4/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 2664 (100.0%) 75896 (100.0%) 28.4
westram 2411 (90.5%) 43467 (57.3%) 18.0
oldcode 31 (1.2%) 22406 (29.5%) 722.7
yadhu 158 (5.9%) 5944 (7.8%) 37.6
murban 23 (0.9%) 2127 (2.8%) 92.4
urban 4 (0.2%) 1160 (1.5%) 290.0
meierh 2 (0.1%) 521 (0.7%) 260.5
epruesse 18 (0.7%) 179 (0.2%) 9.9
jobb 3 (0.1%) 49 (0.1%) 16.3
baderk 5 (0.2%) 22 (0.0%) 4.4
boehnel 7 (0.3%) 20 (0.0%) 2.8
foerster 1 (0.0%) 1 (0.0%) 1.0
artemov 1 (0.0%) 0 (0.0%) 0.0

Most Recent Commits

westram 2022-06-20 12:12 Rev.: 19063


* fixed LOOP_VECTORIZED expressions that used '*'-count (for gcc 10.x-series).

1 lines of code changed in 1 file:

  • EDIT4: ED4_seq_colors.cxx (+1 -1)
westram 2022-05-06 16:47 Rev.: 19024


* fix cursor tracking for consensus editing:
- make variable(s) module-locale + rename
- when cursor is tracked -> only remember position. set cursor after routing down hierarchy.
- track only CHANGED cursor positions => placement less often wrong

22 lines of code changed in 4 files:

  • EDIT4: ED4_main.cxx (-1), ED4_no_class.cxx (+22 -7), ED4_root.cxx (-1), ed4_defs.hxx (-1)
westram 2022-05-06 16:44 Rev.: 19023


* require mapping is up-to-date when {{{jump_sequence_pos}}} gets called.
* update mapping before setting cursor
- after executing keystroke.
- after block-ops.
* rename local.

10 lines of code changed in 3 files:

  • EDIT4: ED4_block.cxx (+2), ED4_cursor.cxx (+4 -2), ED4_no_class.cxx (+4)
westram 2022-03-30 17:39 Rev.: 18980


* {{{create_toggle_field}}}:
- change one flavor: allow to pass label AND orientation.
- directly pass labels (instead of explicit calls to {{{AW_window::label}}})

2 lines of code changed in 1 file:

  • EDIT4: ED4_seq_colors.cxx (+2 -8)
westram 2022-03-30 17:31 Rev.: 18978


* remove unused mnemonic parameter to 'create_toggle_field'
- makes no sense anyway: having mnemonic for each toggle is sufficient (hence not implemented).

3 lines of code changed in 2 files:

  • EDIT4: ED4_naligner.cxx (+2 -2), graph_aligner_gui.cxx (+1 -1)
westram 2022-03-30 17:29 Rev.: 18977


* use {{{AW_orientation}}} to specify orientation of radio button.

6 lines of code changed in 4 files:

  • EDIT4: ED4_ProteinViewer.cxx (+1 -1), ED4_search.cxx (+2 -2), ED4_seq_colors.cxx (+2 -2), ED4_visualizeSAI.cxx (+1 -1)
westram 2022-03-04 16:20 Rev.: 18964


* remove parameter {{{fallback2default}}} from
- {{{create_selection_list}}}
- {{{create_list}}}
- {{{awt_create_TREE_selection_list}}}
- {{{awt_create_CONFIG_selection_list}}}
- {{{awt_create_SAI_selection_list}}}
* remove some - now unused - locals.

4 lines of code changed in 2 files:

  • EDIT4: ED4_no_class.cxx (+3 -3), ED4_visualizeSAI.cxx (+1 -1)
westram 2022-03-04 16:13 Rev.: 18962


* eliminate unused parameter {{{fallback2default}}} from {{{create_option_menu}}}.

9 lines of code changed in 5 files:

  • EDIT4: ED4_ProteinViewer.cxx (+1 -1), ED4_no_class.cxx (+1 -1), ED4_protein_2nd_structure.cxx (+2 -2), ED4_root.cxx (+1 -1), graph_aligner_gui.cxx (+4 -4)
westram 2022-03-04 12:26 Rev.: 18959


* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958

36 lines of code changed in 2 files:

  • EDIT4: Makefile (+29), ed4_class.hxx (+7 -6)
westram 2021-10-10 09:33 Rev.: 18781


* reintegrates 'help' into 'trunk'
- relocate help sources
* adds: log:branches/help@18763:18780

1 lines of code changed in 1 file:

  • EDIT4: ED4_text_terminals.cxx (+1 -1)
westram 2021-09-22 15:08 Rev.: 18742


* use terminal background color (=default, marked or colorized) also if SAI-translation isnt defined for a position.

7 lines of code changed in 1 file:

  • EDIT4: ED4_text_terminals.cxx (+7 -8)
westram 2021-09-20 17:30 Rev.: 18741


* warn if all columns mapped in editor.

17 lines of code changed in 1 file:

  • EDIT4: ED4_manager.cxx (+17 -1)
westram 2021-09-20 12:21 Rev.: 18740


* refactored edit4 column remapper:
- result of {{{compile()}}} now indicates whether mapping has changed (previously returned error which never was set).
* {{{mapping_changed}}} now handled in local variable (previously was stored in class member).
- changed several method/variable types (int->bool)

31 lines of code changed in 2 files:

  • EDIT4: ED4_manager.cxx (+22 -28), ed4_class.hxx (+9 -11)
westram 2021-09-15 13:52 Rev.: 18730


* remove trailing whitespace from c source.

38 lines of code changed in 13 files:

  • EDIT4: ED4_base.cxx (+2 -2), ED4_block.cxx (+4 -4), ED4_dump.cxx (+2 -2), ED4_edit_string.cxx (+2 -2), ED4_manager.cxx (+10 -10), ED4_plugins.cxx (+2 -2), ED4_search.cxx (+2 -2), ED4_seq_colors.cxx (+2 -2), ED4_text_terminals.cxx (+3 -3), ED4_window.cxx (+5 -5), ed4_list.hxx (+2 -2), ed4_plugins.hxx (+1 -1), graph_aligner_gui.cxx (+1 -1)
westram 2021-09-15 13:45 Rev.: 18727


* inline {{{SOURCES}}} where only used to generate list of objects.

1 lines of code changed in 1 file:

  • EDIT4: Makefile (+1 -2)
westram 2021-09-08 17:46 Rev.: 18715


* add predefined setting to consensus properties in edit4: {{{create_species_from_consensus}}}.
* be more verbose what goes wrong while restoring configs.

6 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+6 -1)
westram 2021-09-07 10:37 Rev.: 18704


* reintegrates 'tree' into 'trunk'
* adds: log:branches/tree@18666:18703

1 lines of code changed in 1 file:

  • EDIT4: Makefile (+1)
westram 2020-05-14 19:21 Rev.: 18463


* reintegrates 'top' into 'trunk'
* adds: log:branches/top@18453:18462

23 lines of code changed in 7 files:

  • EDIT4: ED4_cursor.cxx (+3 -3), ED4_main.cxx (+7 -16), ED4_no_class.cxx (+1 -1), ED4_root.cxx (+5 -6), EDB_root_bact.cxx (+6 -48), config_beschr.txt (del), ed4_class.hxx (+1 -7)
westram 2020-04-28 17:42 Rev.: 18450


* ED4_work_info:
- use auto instance in executeKeystroke().
- move -> ed4_edit_string.hxx
- pass down parent workinfo const into call_edit().

61 lines of code changed in 3 files:

  • EDIT4: ED4_no_class.cxx (+35 -36), ed4_defs.hxx (-26), ed4_edit_string.hxx (+26 -3)
westram 2020-04-28 17:29 Rev.: 18449


* ED4_Edit_String:
- make members private.
- fix ctor (elim memset initialization).

17 lines of code changed in 2 files:

  • EDIT4: ED4_edit_string.cxx (+9 -3), ed4_edit_string.hxx (+8 -5)
westram 2020-04-28 17:27 Rev.: 18448


* ED4_Edit_String:
- remove unneeded global instance.
- use automatic instances.
- remove init_edit().

10 lines of code changed in 5 files:

  • EDIT4: ED4_edit_string.cxx (-9), ED4_no_class.cxx (+10 -12), ED4_root.cxx (-1), ed4_class.hxx (-2), ed4_edit_string.hxx (-1)
westram 2020-04-28 17:23 Rev.: 18447


* cosmetic + todos.

16 lines of code changed in 4 files:

  • EDIT4: ED4_edit_string.cxx (+1 -1), ED4_no_class.cxx (+2 -1), ed4_defs.hxx (+5 -5), ed4_edit_string.hxx (+8 -7)
westram 2020-04-25 20:18 Rev.: 18445


* implement page up/down functionality for edit4
- {{{PgUp}}}/{{{PgDown}}} scrolls half page up/down
- pages horizontally when used together with ALT

16 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+16 -1)
westram 2020-04-25 20:08 Rev.: 18444


* ed4_scroll() can ignore scrollspeed (from awar).

10 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+10 -5)
westram 2020-04-25 20:06 Rev.: 18443


* code move only.

61 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+61 -61)
westram 2020-04-22 15:46 Rev.: 18440


* warn if any path used in ARB does contain spaces (too error-prone)
- added helper functions into CORE
- warn about unwanted chars
* in result from getenv_executable(), getenv_existing_directory(), getenv_autodirectory(), GB_find_executable().
* in path of sina executable and of pigz used in ARB_zfopen().

19 lines of code changed in 1 file:

  • EDIT4: graph_aligner_gui.cxx (+19 -11)
westram 2020-03-03 18:07 Rev.: 18355


* fix invalid access to ED4_ROOT (before it's initialized):
- has been introduced with [18351]
- move ED4_propertyName into ED4_root.cxx.
- make static.
- rename ED4_propertyName -> propertyName.
- pass gb_main down into detectProperties + propertyName.

41 lines of code changed in 3 files:

  • EDIT4: ED4_main.cxx (-34), ED4_root.cxx (+41 -8), ed4_tools.hxx (-2)
westram 2020-03-03 13:23 Rev.: 18352


* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18339:18351

411 lines of code changed in 25 files:

  • EDIT4: ED4_ProteinViewer.cxx (+36 -32), ED4_base.cxx (+10 -8), ED4_block.cxx (+6 -4), ED4_cursor.cxx (+32 -28), ED4_dots.cxx (+6 -5), ED4_flags.cxx (+2 -2), ED4_main.cxx (+33 -28), ED4_manager.cxx (+2 -3), ED4_naligner.cxx (+6 -7), ED4_nds.cxx (+1 -1), ED4_no_class.cxx (+101 -96), ED4_protein_2nd_structure.cxx (+4 -3), ED4_root.cxx (+56 -49), ED4_search.cxx (+17 -16), ED4_seq_colors.cxx (+6 -7), ED4_terminal.cxx (+50 -68), ED4_text_terminals.cxx (+1 -1), ED4_visualizeSAI.cxx (+12 -11), ED4_window.cxx (+2 -2), EDB_root_bact.cxx (+9 -5), ed4_class.hxx (+6 -1), ed4_defs.hxx (-1), ed4_naligner.hxx (+2 -2), ed4_seq_colors.hxx (+4 -5), graph_aligner_gui.cxx (+7 -6)
westram 2020-02-21 14:07 Rev.: 18311


* reintegrates 'saicalc' into 'trunk'
- implements #730
* adds: log:branches/saicalc@18141:18310

5 lines of code changed in 4 files:

  • EDIT4: ED4_block.cxx (+1 -1), ED4_cursor.cxx (+1 -1), ED4_dots.cxx (+1 -1), ED4_protein_2nd_structure.cxx (+2 -2)
westram 2019-10-08 17:51 Rev.: 18159


* full update from child 'fix' into 'trunk'
- fix item name accessors ({{{GBT_get_name}}} + {{{GBT_get_name_or_description}}})
- add {{{null2empty}}}
* adds: log:branches/fix@18140:18158

11 lines of code changed in 8 files:

  • EDIT4: ED4_ProteinViewer.cxx (+2 -2), ED4_cursor.cxx (+2 -2), ED4_dots.cxx (+1 -1), ED4_naligner.cxx (+1 -1), ED4_no_class.cxx (+1 -1), ED4_protein_2nd_structure.cxx (+1 -1), ED4_terminal.cxx (+1 -1), ED4_visualizeSAI.cxx (+2 -2)
westram 2019-07-17 16:27 Rev.: 17982


* reduced use of GB_change_my_security:
- use GB_securityLevel instead of manually fiddling around with GB_change_my_security.
- inspected and accepted leftover uses (see comments).

1 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+1 -1)
westram 2019-07-17 16:22 Rev.: 17980


* use security objects instead of manually calling GB_push/pop_my_security.
* eliminate GB_push/pop_my_security.
* fix scoping using a TA object.

3 lines of code changed in 1 file:

  • EDIT4: ED4_root.cxx (+3 -5)
westram 2019-07-02 14:45 Rev.: 17944


* FIXES crash in RELEASE version (when invalid color group occurs in database).
* add assertions against
- invalid color_groups and
- invalid unshaded GCs.
* ARBDB color-group interface:
- define number of allowed color groups in ARBDB
- fix interface types (long->int)
- report error when color_group passed to {{{GBT_set_color_group}}} is out-of-range.
- {{{GBT_get_color_group}}} does range check. returns 0 if out-of-range.

56 lines of code changed in 2 files:

  • EDIT4: ED4_text_terminals.cxx (-1), Makefile (+56)
westram 2019-05-10 13:57 Rev.: 17877


* reintegrates 'gcc' into 'trunk'
* adds: log:branches/gcc@17850:17876

50 lines of code changed in 4 files:

  • EDIT4: ED4_flags.cxx (+1 -1), ED4_protein_2nd_structure.cxx (+8 -5), ED4_seq_colors.cxx (+1 -1), ed4_class.hxx (+40 -39)
westram 2019-04-29 14:44 Rev.: 17836


* reintegrates 'clone' into 'trunk'
* adds: log:branches/clone@17813:17835

2 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+2 -2)
westram 2019-04-05 19:32 Rev.: 17748


* remove hardcoded 'markCreated==true' from
- GBT_find_or_create_species_rel_species_data and
- GBT_find_or_create_species.
* hardcode 'markCreated==false' in GBT_find_or_create_SAI.
- changes result DB.
- increase diff buf size (result DB has loooong lines).

1 lines of code changed in 1 file:

  • EDIT4: ED4_no_class.cxx (+1 -1)
westram 2019-04-01 17:41 Rev.: 17724


* partial merge from 'fts' into 'trunk'
- {{{ConfigMapping}}}:
* cleanup
* add missing tests
* fix config bug: trailing backslash at end of values did cause wrong read of data
* adds: log:branches/fts@17718:17723

12 lines of code changed in 1 file:

  • EDIT4: Makefile (+12)
westram 2019-03-07 18:30 Rev.: 17651


* reintegrates 'cleanup' into 'trunk'
* adds: log:branches/cleanup@17627:17650

4 lines of code changed in 1 file:

  • EDIT4: ed4_visualizeSAI.hxx (+4 -4)
westram 2018-10-31 10:52 Rev.: 17593


* reintegrates 'fix' into 'trunk'
- performs #798
* adds genetic code tables (24-31)
* adds combined amino acid J (I or L)
* improved translate and/or realign
- handle optional start-/stop-codons
- improve recognition of nuc-triples containing IUPAC-codes
* error messages now always list EMBL table numbers
* adds:
- log:branches/fix@17480:17485,17491:17492,17494:17507,17509:17528,17534:17592
- log:branches/optional@17481:17568

11 lines of code changed in 2 files:

  • EDIT4: ED4_ProteinViewer.cxx (+10 -18), Makefile (+1)
westram 2018-10-24 15:58 Rev.: 17534


* partial merge from 'fix' into 'trunk'
- globally define what are "gaps"
- kept behavioral changes to a minimum:
* defaults for (user-defined) gap-definition in EDIT4 changed
* EDIT sequence search also uses user-defined gaps
* adds: log:branches/fix@17529:17533

11 lines of code changed in 5 files:

  • EDIT4: ED4_main.cxx (+1 -1), ED4_search.cxx (+5 -4), ED4_seq_colors.cxx (+2 -1), Makefile (+2), ed4_edit_string.hxx (+1 -1)

(900 more)

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