Directory NTREE/

Directory Created:
2000-11-23 11:41
Total Files:
44
Deleted Files:
40
Lines of Code:
19693

[root]/NTREE

Lines of Code

NTREE/ Lines of Code

Developers

Author Changes Lines of Code Lines per Change
Totals 2668 (100.0%) 62709 (100.0%) 23.5
westram 2514 (94.2%) 47755 (76.2%) 18.9
oldcode 35 (1.3%) 9712 (15.5%) 277.4
yadhu 54 (2.0%) 3232 (5.2%) 59.8
richter 23 (0.9%) 1336 (2.1%) 58.0
meierh 8 (0.3%) 471 (0.8%) 58.8
murban 5 (0.2%) 123 (0.2%) 24.6
epruesse 16 (0.6%) 63 (0.1%) 3.9
huberj 4 (0.1%) 9 (0.0%) 2.2
baderk 6 (0.2%) 4 (0.0%) 0.6
boehnel 1 (0.0%) 3 (0.0%) 3.0
brettske 1 (0.0%) 1 (0.0%) 1.0
artemov 1 (0.0%) 0 (0.0%) 0.0

Most Recent Commits

westram 2022-06-29 14:54 Rev.: 19100


* reintegrates 'split' into 'trunk'
- implemented beta version of alignment splitter
* adds: log:branches/split@19077:19099

416 lines of code changed in 4 files:

  • NTREE: Makefile (+39), NT_extern.cxx (+4 -2), NT_local_proto.h (+4), NT_split_ali.cxx (new 369)
westram 2022-06-29 11:28 Rev.: 19078


* pass properties (not DB) -> store initials in properties (not in DB).
* remove unneeded header.

1 lines of code changed in 4 files:

  • NTREE: Makefile (-1), NT_extern.cxx (+1 -1), NT_trackAliChanges.cxx (-1), NT_trackAliChanges.h (del)
westram 2022-03-30 17:36 Rev.: 18979


* fix use of empty labels:
- {{{AW_window::label}}} no longer
* accepts empty labels.
* allows to overwrite existing labels (assume this happens by mistake).
- {{{create_toggle_field}}}:
* assert label is used (in flavor with label-parameter)
* remove empty and NULp labels passed (from callers).

4 lines of code changed in 3 files:

  • NTREE: AP_consensus.cxx (+2 -2), NT_taxonomy.cxx (+1 -1), ad_transpro.cxx (+1 -1)
westram 2022-03-30 17:31 Rev.: 18978


* remove unused mnemonic parameter to 'create_toggle_field'
- makes no sense anyway: having mnemonic for each toggle is sufficient (hence not implemented).

5 lines of code changed in 4 files:

  • NTREE: AP_consensus.cxx (+2 -2), NT_group_search.cxx (+1 -1), NT_taxonomy.cxx (+1 -1), ad_transpro.cxx (+1 -1)
westram 2022-03-30 17:29 Rev.: 18977


* use {{{AW_orientation}}} to specify orientation of radio button.

1 lines of code changed in 1 file:

  • NTREE: ColumnStat_2_gnuplot.cxx (+1 -1)
westram 2022-03-17 14:11 Rev.: 18965


* quit prompt:
- print leading zero for seconds.
- do not plenk!
- increase noask-period after save.

3 lines of code changed in 1 file:

  • NTREE: NT_extern.cxx (+3 -3)
westram 2022-03-04 16:20 Rev.: 18964


* remove parameter {{{fallback2default}}} from
- {{{create_selection_list}}}
- {{{create_list}}}
- {{{awt_create_TREE_selection_list}}}
- {{{awt_create_CONFIG_selection_list}}}
- {{{awt_create_SAI_selection_list}}}
* remove some - now unused - locals.

21 lines of code changed in 12 files:

  • NTREE: AP_consensus.cxx (+2 -2), AP_pos_var_pars.cxx (+2 -2), ColumnStat_2_gnuplot.cxx (+1 -1), NT_cb.cxx (+1 -1), NT_edconf.cxx (+3 -3), NT_extern.cxx (+1 -1), NT_group_search.cxx (+2 -2), NT_sync_scroll.cxx (+1 -1), NT_syncroot.cxx (+1 -1), NT_validManual.cxx (+1 -1), ad_ext.cxx (+1 -1), ad_trees.cxx (+5 -5)
westram 2022-03-04 16:13 Rev.: 18962


* eliminate unused parameter {{{fallback2default}}} from {{{create_option_menu}}}.

24 lines of code changed in 6 files:

  • NTREE: NT_concatenate.cxx (+1 -1), NT_extern.cxx (+2 -2), NT_group_search.cxx (+9 -9), NT_ins_col.cxx (+3 -3), ad_transpro.cxx (+2 -2), ad_trees.cxx (+7 -7)
westram 2022-03-04 12:26 Rev.: 18959


* reintegrates 'progress' into 'trunk'
- implements #789
* adds: log:branches/progress@18885:18958

36 lines of code changed in 3 files:

  • NTREE: Makefile (+30), NT_extern.cxx (+4 -1), ad_trees.cxx (+2 -1)
westram 2021-12-20 18:44 Rev.: 18883


* reintegrates 'nds' into 'trunk'
- fixes #841
* adds: log:branches/nds@18843:18882

139 lines of code changed in 2 files:

  • NTREE: NT_extern.cxx (+81 -14), ad_trees.cxx (+58 -49)
westram 2021-12-17 16:34 Rev.: 18864


* remove 'Start a slave ARB on a foreign host' (obsolete).

0 lines of code changed in 1 file:

  • NTREE: NT_extern.cxx (-5)
westram 2021-10-10 09:33 Rev.: 18781


* reintegrates 'help' into 'trunk'
- relocate help sources
* adds: log:branches/help@18763:18780

2 lines of code changed in 1 file:

  • NTREE: AP_consensus.cxx (+2 -2)
westram 2021-10-07 19:18 Rev.: 18754


* define {{{ItemSelector}}} for SAIs (lacks changekey functionality, i.e. does not fit into a search&query).
* mark places where species-selector is misused for SAIs.

1 lines of code changed in 1 file:

  • NTREE: ad_ext.cxx (+1 -1)
westram 2021-09-15 13:52 Rev.: 18730


* remove trailing whitespace from c source.

15 lines of code changed in 9 files:

  • NTREE: ColumnStat_2_gnuplot.cxx (+2 -2), NT_branchAnalysis.cxx (+1 -1), NT_concatenate.cxx (+2 -2), NT_dbrepair.cxx (+1 -1), NT_main.cxx (+4 -4), NT_tree_cmp.cxx (+2 -2), NT_validNameParser.h (+1 -1), ScrollSynchronizer.cxx (+1 -1), ad_spec.cxx (+1 -1)
westram 2021-09-07 10:37 Rev.: 18704


* reintegrates 'tree' into 'trunk'
* adds: log:branches/tree@18666:18703

16 lines of code changed in 3 files:

  • NTREE: Makefile (+2), NT_extern.cxx (+6 -6), ad_trees.cxx (+8 -6)
westram 2021-09-02 09:46 Rev.: 18697


* full update from child 'stable' into 'trunk'
- merge changes done to arb-7.0 release candidate
* adds: log:branches/stable@18690:18695

1 lines of code changed in 1 file:

  • NTREE: NT_main.cxx (+1 -1)
westram 2021-08-17 15:15 Rev.: 18665


* change many WARN_TODO triggered warnings into todo markers.

4 lines of code changed in 4 files:

  • NTREE: ColumnStat_2_gnuplot.cxx (+1 -3), NT_dbrepair.cxx (+1 -3), NT_extern.cxx (+2 -3), ad_trees.cxx (-3)
westram 2021-05-26 17:01 Rev.: 18652


* fix nameserver admin layout:
- status field now colored and resizeable
- change title
* change term 'name server' -> 'nameserver'.

1 lines of code changed in 1 file:

  • NTREE: NT_extern.cxx (+1 -1)
westram 2021-05-26 16:50 Rev.: 18651


* add 'configure' button to 'synchronize ids'
- refactored AW_create_namesadmin_window -> AW_popup_namesadmin_window.
- document

1 lines of code changed in 1 file:

  • NTREE: NT_extern.cxx (+1 -1)
westram 2021-02-18 17:33 Rev.: 18643


* allow to 'edit bootstraps'
- document example.
- when a replacement results in an empty string => remove remark.

2 lines of code changed in 1 file:

  • NTREE: NT_extern.cxx (+2 -1)
westram 2021-02-01 18:10 Rev.: 18641


* fixes #824
- define stacksize required for tree-display in {{{TreeDisplay.hxx}}} (currently 20Mb)
- use that stacksize NTREE and PARSIMONY.

18 lines of code changed in 2 files:

  • NTREE: Makefile (+14), NT_main.cxx (+4 -2)
westram 2020-11-10 17:24 Rev.: 18634


* reintegrates 'root' into 'trunk'
- implements #449
* adds: log:branches/root@18451:18633

975 lines of code changed in 4 files:

  • NTREE: Makefile (+45), NT_extern.cxx (+3 -2), NT_local_proto.h (+3), NT_syncroot.cxx (new 924)
westram 2020-09-23 13:48 Rev.: 18481


* set "TAB separated" as default NDS column delimiter.
- rename AWAR to reset properties in userland.

4 lines of code changed in 1 file:

  • NTREE: NT_extern.cxx (+4 -4)
westram 2020-05-14 19:21 Rev.: 18463


* reintegrates 'top' into 'trunk'
* adds: log:branches/top@18453:18462

37 lines of code changed in 4 files:

  • NTREE: NT_edconf.cxx (+31 -17), NT_extern.cxx (+2), NT_local.h (+1), ad_ext.cxx (+3)
westram 2020-03-03 13:23 Rev.: 18352


* full update from child 'fix' into 'trunk'
* adds: log:branches/fix@18339:18351

1 lines of code changed in 1 file:

  • NTREE: NT_main.cxx (+1 -1)
westram 2020-02-26 19:46 Rev.: 18339


* full update from child 'fix' into 'trunk'
- fixes #754
* adds: log:branches/fix@18333:18338

2 lines of code changed in 1 file:

  • NTREE: NT_main.cxx (+2)
westram 2020-02-25 17:32 Rev.: 18325


* result of sorting database by a criteria with non-strict species order is implementation dependent.
- test explicit order only for one OS (that test has only minor/no importance)

7 lines of code changed in 1 file:

  • NTREE: NT_sort.cxx (+7)
westram 2020-02-21 14:07 Rev.: 18311


* reintegrates 'saicalc' into 'trunk'
- implements #730
* adds: log:branches/saicalc@18141:18310

7 lines of code changed in 5 files:

  • NTREE: AP_consensus.cxx (+1 -1), Makefile (+1), NT_extern.cxx (+3 -1), NT_ins_col.cxx (+1 -1), needs_libs (+1)
westram 2019-11-18 16:45 Rev.: 18214


* stuff leak in test code.

1 lines of code changed in 1 file:

  • NTREE: NT_sort.cxx (+1)
westram 2019-11-08 16:27 Rev.: 18208


* full update from child 'fix' into 'trunk'
- finish tests introduced with [18200]
* adds: log:branches/fix@18194:18207

76 lines of code changed in 1 file:

  • NTREE: NT_sort.cxx (+76 -40)
westram 2019-11-07 15:45 Rev.: 18200


* reintegrates 'bugfix' into 'trunk'
- add unittest for "sort database"
- fix #820
* adds: log:branches/bugfix@18196:18199

84 lines of code changed in 2 files:

  • NTREE: Makefile (+1), NT_sort.cxx (+83 -9)
westram 2019-10-08 17:51 Rev.: 18159


* full update from child 'fix' into 'trunk'
- fix item name accessors ({{{GBT_get_name}}} + {{{GBT_get_name_or_description}}})
- add {{{null2empty}}}
* adds: log:branches/fix@18140:18158

18 lines of code changed in 7 files:

  • NTREE: NT_concatenate.cxx (+12 -11), NT_dbrepair.cxx (+1 -1), NT_edconf.cxx (+1 -1), NT_main.cxx (+1 -1), NT_shadeTree.cxx (+1 -1), ScrollSynchronizer.cxx (+1 -2), ad_spec.cxx (+1 -1)
westram 2019-07-17 16:27 Rev.: 17982


* reduced use of GB_change_my_security:
- use GB_securityLevel instead of manually fiddling around with GB_change_my_security.
- inspected and accepted leftover uses (see comments).

1 lines of code changed in 1 file:

  • NTREE: NT_extern.cxx (+1 -1)
westram 2019-07-17 16:22 Rev.: 17980


* use security objects instead of manually calling GB_push/pop_my_security.
* eliminate GB_push/pop_my_security.
* fix scoping using a TA object.

8 lines of code changed in 3 files:

  • NTREE: NT_dbrepair.cxx (+1 -2), NT_extern.cxx (+2 -4), NT_main.cxx (+5 -8)
westram 2019-07-02 14:45 Rev.: 17944


* FIXES crash in RELEASE version (when invalid color group occurs in database).
* add assertions against
- invalid color_groups and
- invalid unshaded GCs.
* ARBDB color-group interface:
- define number of allowed color groups in ARBDB
- fix interface types (long->int)
- report error when color_group passed to {{{GBT_set_color_group}}} is out-of-range.
- {{{GBT_get_color_group}}} does range check. returns 0 if out-of-range.

1 lines of code changed in 2 files:

  • NTREE: Makefile (+1), NT_extern.cxx (-1)
westram 2019-05-10 13:57 Rev.: 17877


* reintegrates 'gcc' into 'trunk'
* adds: log:branches/gcc@17850:17876

2 lines of code changed in 1 file:

  • NTREE: ad_spec.cxx (+2 -2)
westram 2019-04-29 14:44 Rev.: 17836


* reintegrates 'clone' into 'trunk'
* adds: log:branches/clone@17813:17835

6 lines of code changed in 5 files:

  • NTREE: NT_concatenate.cxx (+1 -1), NT_join.cxx (+1 -1), NT_tree_cmp.cxx (+1 -1), ad_ext.cxx (+2 -2), ad_spec.cxx (+1 -1)
westram 2019-04-05 19:32 Rev.: 17748


* remove hardcoded 'markCreated==true' from
- GBT_find_or_create_species_rel_species_data and
- GBT_find_or_create_species.
* hardcode 'markCreated==false' in GBT_find_or_create_SAI.
- changes result DB.
- increase diff buf size (result DB has loooong lines).

1 lines of code changed in 1 file:

  • NTREE: AP_consensus.cxx (+1 -1)
westram 2019-04-04 16:47 Rev.: 17742


* fix unnecessary typos.

1 lines of code changed in 1 file:

  • NTREE: NT_tree_cmp.cxx (+1 -1)
westram 2019-04-01 17:41 Rev.: 17724


* partial merge from 'fts' into 'trunk'
- {{{ConfigMapping}}}:
* cleanup
* add missing tests
* fix config bug: trailing backslash at end of values did cause wrong read of data
* adds: log:branches/fts@17718:17723

9 lines of code changed in 3 files:

  • NTREE: Makefile (+9), NT_edconf.cxx (-1), NT_group_search.cxx (-1)

(1065 more)

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