3609 lines of code changed in 42 files:
-
GDE/MOLPHY/utl:
ali2mol.pl (new 80),
clus2mol.pl (new 64),
degene4.pl (new 120),
degene4l.pl (new 120),
disjoint.pl (new 60),
dna2ami.pl (new 125),
eali2mol.pl (new 98),
egetcds.pl (new 69),
getcds.pl (new 72),
ggetcds.pl (new 74),
inf2mol.pl (new 92),
infocode.pl (new 206),
infocode2.pl (new 182),
int2mol.pl (new 72),
mc2mol.pl (new 70),
mega2mol.pl (new 65),
mol2inf.pl (new 72),
mol2int.pl (new 60),
mol2mol.pl (new 59),
mol2phy.pl (new 61),
mol2seq.pl (new 83),
molcat.pl (new 81),
molcodon.pl (new 98),
molcons.pl (new 79),
molcut.pl (new 77),
molinfo.pl (new 106),
mollist.pl (new 57),
molmerge.pl (new 90),
molrev.pl (new 60),
molsplit.pl (new 55),
must2mol.pl (new 63),
njt2tpl.pl (new 9),
nuc2NUC.pl (new 62),
nuc2code.pl (new 65),
nuc2ptn.pl (new 154),
phy2mol.pl (new 60),
rmid3.pl (new 98),
rminsdel.pl (new 144),
rmleu.pl (new 120),
rmsyno.pl (new 137),
seq2mol.pl (new 75),
seqwrap.pl (new 15)